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Gene: Tmem169 (transmembrane protein 169) Rattus norvegicus

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Symbol:

Tmem169

Name:

transmembrane protein 169

RGD ID:

1582820

Description:

Predicted to be located in membrane. Orthologous to human TMEM169 (transmembrane protein 169); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC690294; similar to CG4596-PA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM169 (transmembrane protein 169)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CDR2 (cerebellar degeneration related protein 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tmem169 (transmembrane protein 169)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM169 (transmembrane protein 169)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem169b (transmembrane protein 169b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem169a (transmembrane protein 169a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem169a (transmembrane protein 169a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4596	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4596	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem169	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tmem169	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	81,375,854 - 81,399,970 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	9	73,926,553 - 73,950,679 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	73,926,568 - 73,950,576 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	82,390,679 - 82,414,722 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	87,519,551 - 87,543,590 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	85,907,110 - 85,931,190 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	79,630,592 - 79,654,686 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	79,630,604 - 79,654,688 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	79,403,626 - 79,427,523 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	71,443,776 - 71,467,777 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	71,324,191 - 71,348,242 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

panobinostat (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

resorcinol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Tmem169
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	81,375,854 - 81,399,970 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	9	73,926,553 - 73,950,679 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	73,926,568 - 73,950,576 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	82,390,679 - 82,414,722 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	87,519,551 - 87,543,590 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	85,907,110 - 85,931,190 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	79,630,592 - 79,654,686 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	79,630,604 - 79,654,688 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	79,403,626 - 79,427,523 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	71,443,776 - 71,467,777 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	71,324,191 - 71,348,242 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

TMEM169
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	216,081,919 - 216,102,783 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	216,081,866 - 216,102,783 (+)	Ensembl			hg38	GRCh38
GRCh37	2	216,946,642 - 216,967,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	216,654,887 - 216,675,739 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	210,716,170 - 210,737,096 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	208,803,861 - 208,824,100 (+)	NCBI		HuRef
CHM1_1	2	216,952,568 - 216,973,483 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	216,567,275 - 216,588,187 (+)	NCBI		T2T-CHM13v2.0

Tmem169
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	72,323,528 - 72,342,263 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	72,284,351 - 72,303,104 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	72,284,369 - 72,303,104 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	72,330,947 - 72,349,569 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	72,217,581 - 72,236,203 (+)	NCBI		MGSCv36	mm8
Celera	1	72,852,729 - 72,871,243 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	36.48	NCBI

Tmem169
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	17,058,397 - 17,065,235 (-)	Ensembl
ChiLan1.0	NW_004955453	17,059,964 - 17,076,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM169
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	118,711,350 - 118,732,280 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	118,726,315 - 118,747,245 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	103,343,989 - 103,364,924 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	221,945,178 - 221,966,097 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	221,945,227 - 221,966,097 (+)	Ensembl			panPan2	panpan1.1

TMEM169
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	23,067,430 - 23,087,835 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	23,067,972 - 23,086,088 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	23,893,263 - 23,915,151 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	23,090,600 - 23,112,882 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	23,090,608 - 23,112,882 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	22,978,073 - 22,999,868 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	22,929,993 - 22,952,017 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	22,947,488 - 22,969,610 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem169
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	171,461,662 - 171,482,739 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936586	1,143,121 - 1,164,208 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936586	1,143,127 - 1,164,185 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM169
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	118,346,943 - 118,352,707 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	118,335,915 - 118,352,713 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	131,216,876 - 131,233,548 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM169
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	101,925,459 - 101,945,277 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	101,935,860 - 101,945,797 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	97,451,150 - 97,472,461 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem169
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	145,871,231 - 145,895,247 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmem169
175 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	139
Count of miRNA genes:	120
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000021539
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat

Markers in Region

D9Got216

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	73,927,527 - 73,927,719 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	79,631,564 - 79,631,753	NCBI	Rnor6.0
Rnor_5.0	9	79,404,586 - 79,404,775	UniSTS	Rnor5.0
RGSC_v3.4	9	71,444,736 - 71,444,925	UniSTS	RGSC3.4
Celera	9	71,325,151 - 71,325,340	UniSTS
Cytogenetic Map	9	q33	UniSTS

BE107003

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	73,937,795 - 73,937,945 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	79,641,828 - 79,641,977	NCBI	Rnor6.0
Rnor_5.0	9	79,414,850 - 79,414,999	UniSTS	Rnor5.0
RGSC_v3.4	9	71,455,000 - 71,455,149	UniSTS	RGSC3.4
Celera	9	71,335,431 - 71,335,580	UniSTS
RH 3.4 Map	9	675.2	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	2	29	139	67	66	39	21	39	6	208	76	9	114	81	83	27	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021539 ⟹ ENSRNOP00000021539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	73,926,568 - 73,950,576 (+)	Ensembl
Rnor_6.0 Ensembl	9	79,630,604 - 79,654,593 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083979 ⟹ ENSRNOP00000073881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	79,630,653 - 79,654,688 (+)	Ensembl

RefSeq Acc Id:

NM_001109574 ⟹ NP_001103044

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	81,375,863 - 81,399,867 (+)	NCBI
mRatBN7.2	9	73,926,568 - 73,950,576 (+)	NCBI
Rnor_6.0	9	79,630,604 - 79,654,593 (+)	NCBI
Rnor_5.0	9	79,403,626 - 79,427,523 (+)	NCBI
RGSC_v3.4	9	71,443,776 - 71,467,777 (+)	RGD
Celera	9	71,324,191 - 71,348,242 (+)	RGD

Sequence:

show sequence

CCAGGCCCGCCTTCGCGGCGGGCGAGGCCTCCTCCCAGAGCTGGACCGCTCCTGGCGGCCGCCT
GCAGTCTTCTGCATCCTCAGCCTCCTTCCTGGGTCCCAGTGAACGTGTGGAGACATCATGTGAC
CCCCTGAAACCTGCATTATTAGAAAGGAGAAAATAGGACTCATTCACATTGGCCTGTAACTACA
GCTCTGGAGGGATCCAACACCTCTAGCCTTTGCAGGTACCTGCGCTCATGTCGCAGTCATCCTC
GGGGGCGTGTCTGCATAGTCCTTTCTGGGTGGAAGCCGTGTGATGTGTGGTGCTTGAGTTTGCG
CAGACAAGCCAGACTCTTCCGTAAATTCAGCTCGTTCTCAGACCTAGGATGGAAGACTCAGCAC
CGGTGGGAAGCCAGGGTCAGCTCCCAAGCCCCCACCACGGCTCACTGAGGAGGGCGGTGGCTGC
TGTCCTGGCCCTGGATGGGGAATCCACATTGGGCCGTAGGAAGAAGAGGAGGAAAGACTCTCGC
CCAGAATCCATCATCATCTATCGGTCAGATAATGAGAAGACGGATGAGGAACCTGACGAATCTG
AAGCTGGAGATCGGCCTAAGGAAGAAGAGGGGGAGGACTTCCTGGACTACCCTGGAGATGATGG
TATGTGGAACATGCCTCTGGACAGTCGCTATGTCACACTAACTGGGACCATCACACGAGGGAAG
AAAAAGGGTCAGATGGTGGATATCCACGTCACTCTGACAGAGAAGGAGCTGCAGGAGCTGACCA
AACCCCAGGAGCTGTCAAGGGAAGCAGCACCCGAGGGAAGAAGGGCCTGTCAGGTGGGGGCAGA
CCAGGGGCCACATGTGGTCCTCTGGACACTAGTCTGCCTGCCTGTGGTCTTTGTCCTCTCCTTT
GTTGTGTCTTTCTACTATGGCACCATTACCTGGTACAACATCTTTCTTGTGTACAATGAAGAAA
GGACCTTCTGGCATAAGATTTCCTGCTGCCCGTGCCTCATTCTCTTCTATCCAGTGCTCATCAT
GGCTATGGCCTCTTCCCTGGGGCTTTATGCTGCCGTGGTCCAGCTCTCATGGTCCTGGGCAGCA
TGGTGGCGGGCTGCCTGTGACATGGAGAAGGGCTTCTGTGGCTGGCTCTGCAGCAAGCTGGGTC
TGGAGGACTGTTCTCCCTACAGCATTGTGGAGCTGCTGGAGTCTGATAATATCTCCAGCAATCT
CTCCAACAAGGACCCCATCCCGGAAGTAGAAACCTCTACTGTGTAGACCGCCGGTGACTTCCTT
CCCCGGCCCTAGTAGTAGTCTATAGTCCATACTACGGAATCTAGAGTCTTTCCTTAAACTATCT
AATACCCTCTATAGTCCTGGAAAATCCAAGTTCACACTGGTGTATCCCACCATCTTCATTATTT
CAAGGTGGTGCAAAACAGAAAAGCGACTTGTGCCAAAGCAGTTCATTTGAAATACAAATGCTTC
TTGACTCTTTGCCCTAAAATGACTGCTTATGTGGGATATGAATCGTAAATTTCTTCAGGGGCCC
AAACGTGTTATTGGTGACTATAACCCAGGGGAGTGTGTGCCTAAATGTGACAGAAAATATAAAG
AGGCTCAGAGGTGACAATCTACCAAGAAAATAGATGGGAATGAAGCAAGACATTTAGGGAGCTA
GGCTACTAATCTAAAGACTGTGTGCATTACTGTATTTAGATAGAACTGCATATAACTAAAGCCA
CAAACATCAGAGTGCTAAACAAGAGAGAAACGCACATCATTTTTATACATATGCTGGAGGCAGA
CCATCCCAAGACTCTATTAAATTTTCTGGAGTTCACAGGATAGCGGAATGTGATCCTCAGTGCT
CCTCAATGTTGACTACATCTCTAACTGTCATACCAATGGAGATGGAAAGGAGAGCACACTCAAC
CTGTTTAAGGAGGCTTTAAAAGTCCACCCCCTCCCGTACTCCCTCTCAATATTTATTGTCTCTC
ATTGGCCACACTATAGTCACATGACCTCACAATCAAAGGATGCTGGGAAATGTAATCTTTCATC
TGGGTAACTATATTCTTAGATGATTACTGGGGTTATGTGAATTTGAGAAAAGGGGAATAGTGGC
TGTTGGGTAGTTGAGTACAAATCAACATCTTAGGACAGGTATTTAGATACATCCAGAATTCCAA
ATTCTAATGCAGCTTTATTTATTTGTTTGTTTACTCATATAATTATTTTGGCCCTAGTCTTATA
TGGAGAGTTTATACATAGATCTGAGTTACATGCACTATGCTTATGCCTTAGATAGTAGTATCTC
ATGTACTTGGCAACTTACCTTTTGTCAAGTGGTTTCAGGGTTCTTTGGGAAGACCCATTAGATA
GGAGCATAGGTCATACAATCATAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAACA
ATATTTAATCTATAAAGATGGAGAAGAGAGAGAGTACATCTTCCAAATGCTAACCCAGCAGGGA
TCAGTAGCTCAAAATATAAACCACAGCTAGCCTGTGGTTTCACTAAACCCAGGAGCCTTATTCT
CTCAGACCTTTATAACATGAAGCTTCTCTGACAGGGTTAGGAGTAATATAACAGATTAATCTAG
ATGGAAAGATTTTGGACTGGAGAAATAACAACTTCATTTTTAAGAGTATCCTGATTTAAAAAAA
AGTTGAGTCCTAAGAGGTCAGCGAGTTTTGGGGTTTGGGTTCTTAAAAAGAGTGATGATCATTT
TTTAAAATTTAATTTAATTTAATTTTTTTTTGGTGTGTGTGTCTCAGAAGGAAGTGCTCTGAAG
CACTCAGTGAACCAGAGGGGTTGATCAAGCTCCCCAAAAGCCTGCCAGGGACATTTATTTAATG
TATGGTGCTGAACTTCACTTTCAGAGAATTAAAAAAAAAAAAATCCTGTTACTAGTTTGCTC

hide sequence

RefSeq Acc Id:

XM_039084223 ⟹ XP_038940151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	81,375,854 - 81,399,970 (+)	NCBI
mRatBN7.2	9	73,926,563 - 73,950,679 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103044	(Get FASTA)	NCBI Sequence Viewer
	NP_001419471	(Get FASTA)	NCBI Sequence Viewer
	NP_001419472	(Get FASTA)	NCBI Sequence Viewer
	NP_001419473	(Get FASTA)	NCBI Sequence Viewer
	XP_038940151	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75245	(Get FASTA)	NCBI Sequence Viewer
	EDL75246	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001103044 ⟸ NM_001109574

- UniProtKB:

D4ACP3 (UniProtKB/TrEMBL), A6KFI2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEDSAPVGSQGQLPSPHHGSLRRAVAAVLALDGESTLGRRKKRRKDSRPESIIIYRSDNEKTDE
EPDESEAGDRPKEEEGEDFLDYPGDDGMWNMPLDSRYVTLTGTITRGKKKGQMVDIHVTLTEKE
LQELTKPQELSREAAPEGRRACQVGADQGPHVVLWTLVCLPVVFVLSFVVSFYYGTITWYNIFL
VYNEERTFWHKISCCPCLILFYPVLIMAMASSLGLYAAVVQLSWSWAAWWRAACDMEKGFCGWL
CSKLGLEDCSPYSIVELLESDNISSNLSNKDPIPEVETSTV

hide sequence

Ensembl Acc Id:

ENSRNOP00000021539 ⟸ ENSRNOT00000021539

Ensembl Acc Id:

ENSRNOP00000073881 ⟸ ENSRNOT00000083979

RefSeq Acc Id:	XP_038940151 ⟸ XM_039084223
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACP3-F1-model_v2	AlphaFold	D4ACP3	1-297	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1582820	AgrOrtholog
BioCyc Gene	G2FUF-27207	BioCyc
Ensembl Genes	ENSRNOG00000016091	Ensembl
InterPro	TMEM169	UniProtKB/TrEMBL
KEGG Report	rno:690294	UniProtKB/TrEMBL
NCBI Gene	690294	ENTREZGENE
PANTHER	PTHR31777	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 169	UniProtKB/TrEMBL
Pfam	TMEM169	UniProtKB/TrEMBL
PhenoGen	Tmem169	PhenoGen
RatGTEx	ENSRNOG00000016091	RatGTEx
UniProt	A6KFI2	ENTREZGENE, UniProtKB/TrEMBL
	D4ACP3	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Tmem169	transmembrane protein 169	LOC690294	similar to CG4596-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC690294	similar to CG4596-PA	LOC679215	similar to CG4596-PA	Data merged from RGD:1590742	1643240	APPROVED
2006-11-20	LOC679215	similar to CG4596-PA			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC690294	similar to CG4596-PA			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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