Ncoa7 (nuclear receptor coactivator 7) - Rat Genome Database

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Gene: Ncoa7 (nuclear receptor coactivator 7) Rattus norvegicus
Analyze
Symbol: Ncoa7
Name: nuclear receptor coactivator 7
RGD ID: 1566426
Description: Predicted to enable nuclear receptor binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II and response to oxidative stress. Predicted to act upstream of or within negative regulation of cellular response to oxidative stress. Predicted to be active in nucleus. Orthologous to human NCOA7 (nuclear receptor coactivator 7); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498995; RGD1566426; similar to nuclear receptor coactivator 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8128,674,614 - 28,835,891 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl128,675,426 - 28,835,886 (+)EnsemblGRCr8
mRatBN7.2126,856,228 - 27,016,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,856,530 - 27,015,871 (+)EnsemblmRatBN7.2
Rnor_6.0129,225,727 - 29,386,642 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,225,707 - 29,385,199 (+)Ensemblrn6Rnor6.0
Rnor_5.0130,668,315 - 30,828,048 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4127,606,327 - 27,698,608 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera125,535,080 - 25,693,882 (+)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (EXP)
AM-251  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
GSK-J4  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (EXP,ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
orphenadrine  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pyrethrins  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11971969   PMID:26668325  


Genomics

Comparative Map Data
Ncoa7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8128,674,614 - 28,835,891 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl128,675,426 - 28,835,886 (+)EnsemblGRCr8
mRatBN7.2126,856,228 - 27,016,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,856,530 - 27,015,871 (+)EnsemblmRatBN7.2
Rnor_6.0129,225,727 - 29,386,642 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,225,707 - 29,385,199 (+)Ensemblrn6Rnor6.0
Rnor_5.0130,668,315 - 30,828,048 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4127,606,327 - 27,698,608 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera125,535,080 - 25,693,882 (+)NCBICelera
Cytogenetic Map1p11NCBI
NCOA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386125,781,115 - 125,932,034 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6125,780,943 - 125,932,034 (+)Ensemblhg38GRCh38
GRCh376126,102,261 - 126,253,180 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366126,144,000 - 126,293,950 (+)NCBIBuild 36Build 36hg18NCBI36
Celera6126,854,350 - 126,994,612 (+)NCBICelera
Cytogenetic Map6q22.31-q22.32NCBI
HuRef6123,677,772 - 123,829,430 (+)NCBIHuRef
CHM1_16126,366,321 - 126,517,145 (+)NCBICHM1_1
T2T-CHM13v2.06126,969,790 - 127,120,723 (+)NCBIT2T-CHM13v2.0
Ncoa7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391030,521,578 - 30,683,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1030,504,995 - 30,679,322 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381030,645,582 - 30,807,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1030,628,999 - 30,803,326 (-)Ensemblmm10GRCm38
MGSCv371030,365,388 - 30,522,913 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361030,335,743 - 30,492,354 (-)NCBIMGSCv36mm8
Celera1031,571,584 - 31,728,196 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1017.11NCBI
Ncoa7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554367,133,921 - 7,238,692 (+)Ensembl
ChiLan1.0NW_0049554367,110,879 - 7,238,509 (+)NCBIChiLan1.0ChiLan1.0
NCOA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25145,774,570 - 145,921,527 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16143,680,034 - 143,826,816 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06123,568,928 - 123,715,628 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16127,687,862 - 127,833,595 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6127,757,383 - 127,833,595 (+)EnsemblpanPan2panpan1.1
NCOA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1164,664,290 - 64,812,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl164,664,571 - 64,815,219 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha165,475,506 - 65,622,601 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0164,875,551 - 65,023,117 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl164,864,866 - 65,025,551 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1164,804,139 - 64,951,117 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0164,591,438 - 64,738,858 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,242,405 - 65,389,810 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ncoa7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946114,740,844 - 114,881,025 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366393,537,709 - 3,677,643 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366393,538,140 - 3,678,844 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl137,043,805 - 37,193,958 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1137,043,803 - 37,194,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2140,815,397 - 40,963,720 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11347,787,740 - 47,949,814 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1347,786,841 - 47,935,770 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604020,103,664 - 20,260,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncoa7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624753384,621 - 536,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ncoa7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12204,707,318 - 204,859,470 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ncoa7
1295 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:201
Count of miRNA genes:103
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000018849, ENSRNOT00000018871, ENSRNOT00000066629, ENSRNOT00000072506
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat

Markers in Region
RH127757  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2127,016,684 - 27,016,886 (+)MAPPERmRatBN7.2
Rnor_6.0129,386,377 - 29,386,578NCBIRnor6.0
Rnor_5.0130,827,783 - 30,827,984UniSTSRnor5.0
RGSC_v3.4127,699,774 - 27,699,975UniSTSRGSC3.4
Celera125,693,617 - 25,693,818UniSTS
RH 3.4 Map1296.81UniSTS
Cytogenetic Map1p11UniSTS
AU048481  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8128,828,980 - 28,829,077 (+)Marker Load Pipeline
mRatBN7.2127,010,038 - 27,010,135 (+)MAPPERmRatBN7.2
Rnor_6.0129,379,732 - 29,379,828NCBIRnor6.0
Rnor_5.0130,821,138 - 30,821,234UniSTSRnor5.0
RGSC_v3.4127,693,129 - 27,693,225UniSTSRGSC3.4
Celera125,686,972 - 25,687,068UniSTS
Cytogenetic Map1p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018849   ⟹   ENSRNOP00000018849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,675,426 - 28,835,886 (+)Ensembl
mRatBN7.2 Ensembl126,856,530 - 27,015,245 (+)Ensembl
Rnor_6.0 Ensembl129,225,707 - 29,385,199 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097027   ⟹   ENSRNOP00000077233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,675,603 - 28,835,886 (+)Ensembl
mRatBN7.2 Ensembl126,856,530 - 27,015,871 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097952   ⟹   ENSRNOP00000076925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,825,044 - 28,835,886 (+)Ensembl
mRatBN7.2 Ensembl127,005,884 - 27,015,871 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098212   ⟹   ENSRNOP00000084173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,675,444 - 28,835,886 (+)Ensembl
mRatBN7.2 Ensembl126,856,530 - 27,015,871 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119710   ⟹   ENSRNOP00000083285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl127,005,884 - 27,014,928 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000150078   ⟹   ENSRNOP00000099439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,675,426 - 28,835,886 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159673   ⟹   ENSRNOP00000101437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl128,825,032 - 28,835,886 (+)Ensembl
RefSeq Acc Id: XM_006227758   ⟹   XP_006227820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,675,602 - 28,835,891 (+)NCBI
mRatBN7.2126,856,228 - 27,015,040 (+)NCBI
Rnor_6.0129,225,727 - 29,386,642 (+)NCBI
Rnor_5.0130,668,315 - 30,828,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227760   ⟹   XP_006227822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,818,681 - 28,835,891 (+)NCBI
mRatBN7.2127,004,659 - 27,016,950 (+)NCBI
Rnor_6.0129,374,371 - 29,386,642 (+)NCBI
Rnor_5.0130,668,315 - 30,828,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099278   ⟹   XP_038955206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,675,602 - 28,835,891 (+)NCBI
mRatBN7.2126,856,228 - 27,016,950 (+)NCBI
RefSeq Acc Id: XM_039099281   ⟹   XP_038955209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,675,602 - 28,835,891 (+)NCBI
mRatBN7.2126,856,228 - 27,016,950 (+)NCBI
RefSeq Acc Id: XM_063276541   ⟹   XP_063132611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,674,659 - 28,835,891 (+)NCBI
RefSeq Acc Id: XM_063276544   ⟹   XP_063132614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,675,787 - 28,835,891 (+)NCBI
RefSeq Acc Id: XM_063276551   ⟹   XP_063132621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,675,722 - 28,835,891 (+)NCBI
RefSeq Acc Id: XM_063276554   ⟹   XP_063132624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,674,614 - 28,835,891 (+)NCBI
RefSeq Acc Id: XM_063276557   ⟹   XP_063132627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,675,602 - 28,835,891 (+)NCBI
RefSeq Acc Id: XM_063276558   ⟹   XP_063132628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8128,674,614 - 28,835,891 (+)NCBI
RefSeq Acc Id: XP_006227820   ⟸   XM_006227758
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006227822   ⟸   XM_006227760
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000018849   ⟸   ENSRNOT00000018849
RefSeq Acc Id: XP_038955206   ⟸   XM_039099278
- Peptide Label: isoform X1
- UniProtKB: F1LWN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955209   ⟸   XM_039099281
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A0R1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077233   ⟸   ENSRNOT00000097027
Ensembl Acc Id: ENSRNOP00000084173   ⟸   ENSRNOT00000098212
Ensembl Acc Id: ENSRNOP00000083285   ⟸   ENSRNOT00000119710
Ensembl Acc Id: ENSRNOP00000076925   ⟸   ENSRNOT00000097952
RefSeq Acc Id: XP_063132624   ⟸   XM_063276554
- Peptide Label: isoform X3
- UniProtKB: A0A8I5XVX5 (UniProtKB/TrEMBL),   F1LWN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132628   ⟸   XM_063276558
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063132611   ⟸   XM_063276541
- Peptide Label: isoform X1
- UniProtKB: F1LWN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132627   ⟸   XM_063276557
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063132621   ⟸   XM_063276551
- Peptide Label: isoform X3
- UniProtKB: A0A8I5XVX5 (UniProtKB/TrEMBL),   F1LWN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132614   ⟸   XM_063276544
- Peptide Label: isoform X1
- UniProtKB: F1LWN1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101437   ⟸   ENSRNOT00000159673
Ensembl Acc Id: ENSRNOP00000099439   ⟸   ENSRNOT00000150078
Protein Domains
LysM   TLDc

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LWN1-F1-model_v2 AlphaFold F1LWN1 1-968 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566426 AgrOrtholog
BioCyc Gene G2FUF-61979 BioCyc
Ensembl Genes ENSRNOG00000014004 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018849.10 UniProtKB/TrEMBL
  ENSRNOT00000097027 ENTREZGENE
  ENSRNOT00000097027.2 UniProtKB/TrEMBL
  ENSRNOT00000097952.2 UniProtKB/TrEMBL
  ENSRNOT00000098212 ENTREZGENE
  ENSRNOT00000098212.2 UniProtKB/TrEMBL
  ENSRNOT00000150078 ENTREZGENE
  ENSRNOT00000150078.1 UniProtKB/TrEMBL
  ENSRNOT00000159673 ENTREZGENE
  ENSRNOT00000159673.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.350.10 UniProtKB/TrEMBL
InterPro LysM_dom_sf UniProtKB/TrEMBL
  Peptidoglycan-bd_lysin UniProtKB/TrEMBL
  TLDc UniProtKB/TrEMBL
KEGG Report rno:498995 UniProtKB/TrEMBL
NCBI Gene 498995 ENTREZGENE
PANTHER NUCLEAR RECEPTOR COACTIVATOR 7 UniProtKB/TrEMBL
  NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED UniProtKB/TrEMBL
Pfam LysM UniProtKB/TrEMBL
  TLD UniProtKB/TrEMBL
PhenoGen Ncoa7 PhenoGen
PROSITE LYSM UniProtKB/TrEMBL
  TLDC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014004 RatGTEx
SMART LysM UniProtKB/TrEMBL
  TLDc UniProtKB/TrEMBL
Superfamily-SCOP SSF54106 UniProtKB/TrEMBL
UniProt A0A8I5XVX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y5Q5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0R1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L0F4_RAT UniProtKB/TrEMBL
  A0ABK0L4W5_RAT UniProtKB/TrEMBL
  A6JUS3 ENTREZGENE, UniProtKB/TrEMBL
  F1LWN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Ncoa7  nuclear receptor coactivator 7  RGD1566426_predicted  similar to nuclear receptor coactivator 7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1566426_predicted  similar to nuclear receptor coactivator 7 (predicted)  LOC498995  similar to nuclear receptor coactivator 7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498995  similar to nuclear receptor coactivator 7      Symbol and Name status set to provisional 70820 PROVISIONAL