Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Immunodeficiency 118 | | ISO | MCTS1 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Immunodeficiency 118 | | ISO | MCTS1 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Mcts1 (Rattus norvegicus - Norway rat) |
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MCTS1 (Homo sapiens - human) |
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Mcts1 (Mus musculus - house mouse) |
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Mcts1 (Chinchilla lanigera - long-tailed chinchilla) |
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MCTS1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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MCTS1 (Canis lupus familiaris - dog) |
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Mcts1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LOC100738684 (Sus scrofa - pig) |
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MCTS1 (Chlorocebus sabaeus - green monkey) |
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Mcts1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Mcts1
40 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
DXS8324 |
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RH143993 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 57 | 41 | 19 | 41 | 8 | 10 | 74 | 35 | 34 | 11 | 8 |
Low | 1 | 7 | |||||||||||
Below cutoff |
RefSeq Transcripts | NM_001044237 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006257488 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039099623 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC098848 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473991 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ211690 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000066677 ⟹ ENSRNOP00000061717 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000080894 ⟹ ENSRNOP00000074032 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000113941 ⟹ ENSRNOP00000090518 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001044237 ⟹ NP_001037702 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257488 ⟹ XP_006257550 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039099623 ⟹ XP_038955551 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001037702 | (Get FASTA) | NCBI Sequence Viewer |
XP_006257550 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038955551 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH98848 | (Get FASTA) | NCBI Sequence Viewer |
EDM10868 | (Get FASTA) | NCBI Sequence Viewer | |
EDM10869 | (Get FASTA) | NCBI Sequence Viewer | |
EDM10870 | (Get FASTA) | NCBI Sequence Viewer | |
EDM10871 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000061717 | ||
ENSRNOP00000061717.1 | |||
ENSRNOP00000074032 | |||
ENSRNOP00000074032.1 | |||
ENSRNOP00000090518.1 | |||
ENSRNOP00055035272 | |||
ENSRNOP00060024709 | |||
ENSRNOP00065012953 | |||
GenBank Protein | Q4G009 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001037702 ⟸ NM_001044237 |
- UniProtKB: | Q4G009 (UniProtKB/Swiss-Prot), A6JMK9 (UniProtKB/TrEMBL), A0A8I6ADP8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006257550 ⟸ XM_006257488 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2K724 (UniProtKB/TrEMBL), A6JMK7 (UniProtKB/TrEMBL), A0A8I6ADP8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000074032 ⟸ ENSRNOT00000080894 |
RefSeq Acc Id: | ENSRNOP00000061717 ⟸ ENSRNOT00000066677 |
RefSeq Acc Id: | XP_038955551 ⟸ XM_039099623 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A6JMK8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000090518 ⟸ ENSRNOT00000113941 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q4G009-F1-model_v2 | AlphaFold | Q4G009 | 1-182 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13702000 | ||||||||
Promoter ID: | EPDNEW_R12523 | ||||||||
Type: | initiation region | ||||||||
Name: | Mcts1_1 | ||||||||
Description: | MCTS1, re-initiation and release factor | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1566390 | AgrOrtholog |
BioCyc Gene | G2FUF-1256 | BioCyc |
Ensembl Genes | ENSRNOG00000002563 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00055025089 | UniProtKB/Swiss-Prot | |
ENSRNOG00060017835 | UniProtKB/Swiss-Prot | |
ENSRNOG00065010446 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000066677 | ENTREZGENE |
ENSRNOT00000066677.2 | UniProtKB/Swiss-Prot | |
ENSRNOT00000080894.2 | UniProtKB/TrEMBL | |
ENSRNOT00000113941.1 | UniProtKB/TrEMBL | |
ENSRNOT00055043240 | UniProtKB/Swiss-Prot | |
ENSRNOT00060030557 | UniProtKB/Swiss-Prot | |
ENSRNOT00065016916 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 3.10.400.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7379624 | IMAGE-MGC_LOAD |
InterPro | MCT-1/Tma20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Pre-PUA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PUA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PUA-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Uncharacterised_CHP00451 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:302500 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:112904 | IMAGE-MGC_LOAD |
NCBI Gene | 302500 | ENTREZGENE |
PANTHER | MALIGNANT T-CELL-AMPLIFIED SEQUENCE 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR22798 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Pre-PUA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PUA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Mcts1 | PhenoGen |
PIRSF | Tma_RNA-bind_prd | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | PUA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000002563 | RatGTEx |
ENSRNOG00055025089 | RatGTEx | |
ENSRNOG00060017835 | RatGTEx | |
ENSRNOG00065010446 | RatGTEx | |
SMART | PUA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF88697 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0G2K724 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6ADP8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6JMK6_RAT | UniProtKB/TrEMBL | |
A6JMK7 | ENTREZGENE, UniProtKB/TrEMBL | |
A6JMK8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6JMK9 | ENTREZGENE, UniProtKB/TrEMBL | |
MCTS1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-07-27 | Mcts1 | MCTS1, re-initiation and release factor | Mcts1 | malignant T cell amplified sequence 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-03-30 | Mcts1 | malignant T cell amplified sequence 1 | Symbol and Name status set to approved | 1299863 | APPROVED | ||
2006-02-09 | Mcts1 | malignant T cell amplified sequence 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |