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Gene: Tmco4 (transmembrane and coiled-coil domains 4) Rattus norvegicus

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Symbol:

Tmco4

Name:

transmembrane and coiled-coil domains 4

RGD ID:

1566357

Description:

Predicted to be located in membrane. Orthologous to human TMCO4 (transmembrane and coiled-coil domains 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC690449; LOC500573; LOC690449; MGC124660; rCG31182-like; similar to RIKEN cDNA 4632413C14; transmembrane and coiled-coil domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMCO4 (transmembrane and coiled-coil domains 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tmco4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmco4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMCO4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMCO4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmco4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMCO4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMCO4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmco4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmco4 (transmembrane and coiled-coil domains 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tmco4 (transmembrane and coiled-coil domains 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMCO4 (transmembrane and coiled-coil domains 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmco4 (transmembrane and coiled-coil domains 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F35D11.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	MIL1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmco4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	156,498,506 - 156,577,967 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	156,500,011 - 156,577,969 (+)	Ensembl				GRCr8
mRatBN7.2	5	151,216,499 - 151,294,726 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	151,216,812 - 151,294,723 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	153,914,098 - 153,992,072 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	155,688,399 - 155,766,382 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	155,670,316 - 155,748,302 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	157,421,738 - 157,501,104 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	157,423,213 - 157,501,737 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	161,161,634 - 161,240,398 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	157,796,782 - 157,883,890 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	149,602,240 - 149,679,642 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (EXP,ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

furan (EXP)

gentamycin (EXP)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Tmco4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	156,498,506 - 156,577,967 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	156,500,011 - 156,577,969 (+)	Ensembl				GRCr8
mRatBN7.2	5	151,216,499 - 151,294,726 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	151,216,812 - 151,294,723 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	153,914,098 - 153,992,072 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	155,688,399 - 155,766,382 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	155,670,316 - 155,748,302 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	157,421,738 - 157,501,104 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	157,423,213 - 157,501,737 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	161,161,634 - 161,240,398 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	157,796,782 - 157,883,890 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	149,602,240 - 149,679,642 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

TMCO4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	19,682,240 - 19,799,916 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	19,682,207 - 19,800,500 (-)	Ensembl			hg38	GRCh38
GRCh37	1	20,008,733 - 20,126,409 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	19,881,320 - 19,998,997 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	18,335,477 - 18,453,240 (-)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	18,254,239 - 18,370,369 (-)	NCBI		HuRef
CHM1_1	1	20,117,964 - 20,235,643 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	19,505,616 - 19,623,756 (-)	NCBI		T2T-CHM13v2.0

Tmco4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	138,699,588 - 138,786,484 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	138,700,199 - 138,786,482 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	138,972,276 - 139,059,173 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	138,972,888 - 139,059,171 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	138,528,820 - 138,615,086 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	138,244,981 - 138,331,240 (+)	NCBI		MGSCv36	mm8
Celera	4	140,759,897 - 140,844,244 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.57	NCBI

Tmco4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	338,779 - 414,201 (-)	Ensembl
ChiLan1.0	NW_004955452	338,779 - 425,901 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMCO4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	207,316,474 - 207,436,919 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	206,435,024 - 206,552,981 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	18,637,101 - 18,756,705 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	19,679,928 - 19,799,346 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	19,679,928 - 19,799,299 (-)	Ensembl			panPan2	panpan1.1

TMCO4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	78,930,982 - 79,022,247 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	78,937,040 - 79,022,250 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	75,444,544 - 75,535,671 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	79,498,364 - 79,589,238 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	79,504,361 - 79,588,601 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	76,316,576 - 76,407,328 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	77,323,564 - 77,414,636 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	78,394,785 - 78,485,955 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmco4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	40,035,479 - 40,111,718 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	5,860,906 - 5,921,076 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	5,860,263 - 5,936,648 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMCO4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	78,093,664 - 78,179,071 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	78,093,653 - 78,179,078 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	72,164,391 - 72,236,183 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMCO4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	112,747,938 - 112,871,894 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	112,748,527 - 112,872,322 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	3,289,707 - 3,408,542 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmco4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	4,793,812 - 4,882,266 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	4,793,324 - 4,882,334 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmco4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	19,143,980 - 19,209,190 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmco4
510 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	99
Count of miRNA genes:	84
Interacting mature miRNAs:	93
Transcripts:	ENSRNOT00000023431
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

D5Uwm44

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	156,508,119 - 156,508,231 (+)	Marker Load Pipeline
mRatBN7.2	5	151,224,880 - 151,224,992 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	157,430,818 - 157,430,929	NCBI	Rnor6.0
Rnor_5.0	5	161,170,605 - 161,170,716	UniSTS	Rnor5.0
RGSC_v3.4	5	157,805,284 - 157,805,396	RGD	RGSC3.4
RGSC_v3.4	5	157,805,285 - 157,805,396	UniSTS	RGSC3.4
Celera	5	149,610,306 - 149,610,417	UniSTS
RGSC_v3.1	5	157,815,323 - 157,815,435	RGD
Cytogenetic Map	5	q36	UniSTS

RH131164

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	151,294,459 - 151,294,670 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	157,500,838 - 157,501,048	NCBI	Rnor6.0
Rnor_5.0	5	161,240,129 - 161,240,339	UniSTS	Rnor5.0
Celera	5	149,679,376 - 149,679,586	UniSTS
RH 3.4 Map	5	1033.1	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023431 ⟹ ENSRNOP00000023431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	156,500,011 - 156,577,969 (+)	Ensembl
mRatBN7.2 Ensembl	5	151,216,812 - 151,294,723 (+)	Ensembl
Rnor_6.0 Ensembl	5	157,423,213 - 157,501,101 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088556 ⟹ ENSRNOP00000073933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	156,500,011 - 156,577,342 (+)	Ensembl
mRatBN7.2 Ensembl	5	151,216,812 - 151,294,103 (+)	Ensembl
Rnor_6.0 Ensembl	5	157,434,481 - 157,501,737 (+)	Ensembl

RefSeq Acc Id:

NM_001034949 ⟹ NP_001030121

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,500,069 - 156,577,965 (+)	NCBI
mRatBN7.2	5	151,216,812 - 151,294,726 (+)	NCBI
Rnor_6.0	5	157,423,213 - 157,501,104 (+)	NCBI
Rnor_5.0	5	161,161,634 - 161,240,398 (+)	NCBI
RGSC_v3.4	5	157,796,782 - 157,883,890 (+)	RGD
Celera	5	149,602,240 - 149,679,642 (+)	RGD

Sequence:

show sequence

GGCGGGGAGAGCGGAGGCGGGAGCAGCGGGGCCTCTGGGATCCTAGTCACCGTCCCATCCGTCG
CTGTCGCCTCCAGGTTCCACACCCTCCGACCCATGGCTGGTTTTTCTGGTTTGGTCTGTAGAGT
GATTTGCATATTTCCTTGAAGAACCCAGTGAAACTGCACAGCCTGTCCTTGGACTTACAAGAGG
GACGCCCACGCCCCTGTTGGTTCTCCAGAATTGGGAGCTGGGAATGGCCACATGGAACCGGCCG
CACCCAAGGCTGCCTGTGGCACCAGAGCCAGTTGCAGAAGGGGAGTCCCAGCAGCCCCTGGGGC
GAGAGCTCTCGGAGGCCAACCGTTTTGCCTATGCCGCCCTGTGTGGCATCTCTTTGTCACAGCT
GTTTCCAGAACCTGAGCAAAGCTCCTTCTGCTCAGAATTTGTGACGGGCCTGGTGAAATGGTTG
CATCTGTCTGAAACTGTCCTCCCAACCATGATGGCCTTTGCCAGCGGCCTGGGAGGCAAAGGAG
ATGACATCTTTGCTCAGACTTTATTGAAGGACCCCATTCTGAAAGACAACCCATCAGCCATCAG
TCAGGACCTCCTGAGCTTCTCACTCAAGGATGGGCACTACGATGCCCGAGCCAGAGTCCTCGTT
TGTCATGTGATCTCCCTGCTCCAGGTGCCCATGGAGGAGCTTGATATTCTCGAAGAGGTGTTCC
TGGAGAGCCTGAAGGACGCCAAAGAGGAGGAGTCTGAGACCGCAGAGGAGTCCCGGAAGAGAAA
AGAAAAAAGGAGGAAGTGGAAGCGCTATCTCCTGATTGGCCTGGCCACAGTTGGAGGCGGGACA
GTGATTGGTGTGACAGGGGGCCTAGCTGCCCCCCTTGTTGCCGCCGGAGCTGCGACAATTATAG
GCAGCGCTGGGGCAGCTGCGTTGGGCTCCGTGGCTGGCATCGCTGTTATGACCTCACTGTTTGG
TGCAGCCGGAGCTGGCCTGACAGGATACAAGATGAAGAAGCGAGTCGGGGCCATTGAGGAGTTC
ATGTTCCTGCCTCTGACGGATGGCAAGCAGCTACATATCACCATCGCCATCACTGGCTGGCTCG
GGTCCGGCAGATACCGTACATTCAATGCCCCATGGATGGCCCTAGCCCGCAGCCAGGAGCAGTA
CTGCCTGGCCTGGGAGGCCAAGTACCTGATGGAGTTGGGCAATGCCCTGGAGACCATTCTCAGT
GGCCTCGCTAACATGGTGGCCCAGGAGGCTCTCAAGTACACCGTGCTCTCTGGTATCGTGGCTG
CTCTAACCTTGCCGGCCTCCCTCCTCAGCGTCGCCAATGTCATCGACAACCCCTGGGGGGTGTG
TCTCCACCGGTCTGCTGAGGTTGGCAAGCACCTAGCACACATCCTTCTCTCGAGGCAACAGGGC
CGGAGGCCTGTCACCTTGATTGGATTCAGCCTGGGAGCCAGAGTCATCTACTTCTGTCTGCAAG
AGATGGCTCAGGAGCAAGATTGCCAAGGGATCATCGAGGATGTTGTCCTTCTGGGCGCACCAGT
AGAGGGGGACCCCAAGTACTGGGAACCGTTCCGGAATGTGGTGTCTGGGAGAATCATCAACGGC
TACTGCAGGGGAGACTGGCTGCTGAGTTTCGTGTACCGCACATCTTCTGTGCAGCTCCGCGTCG
CAGGCCTCCAGCCTGTGCTGTTGCAGGACCGGAGGATGGAGAACGTGGACCTGTCCTCAGTGGT
CAATGGCCATTTGGACTATGCCAAGAAAATGGATGTCATCCTGAAGGCTGTGGGCATCCGCACC
AAGCCTGGCTGGAGTGAGAAGGGACTCCCACTGGCCCCTGGCGGCCTGCCCCAAGAAGAGCCTC
TCCAGCCAGCCACAGTCTCCACAGATGAGACAATCCACCAGGATGAACAAAAGCAGGGACCTGC
CCCAGGAGACAGTCTCAAATCCGCCATTCCTTCCAGTGCCAGCCAAGCCCAGGTGCCAGCAGGG
CTGGACCAATCCACAGAGGACTCGCTCCCTGCTGCCGCTGCACCAGCAGAGGGGCACCTGGTCT
GCAGCCATGGTGTGGGACCCAACCCACTGGGCTGCCCTGACTGCACCCGTGAGACCCAGGAGTC
CTGTGCAGAACTAGACTGACCCTGCAGGCATCTGGACTACTCTCCAGACGCCTCTATGCAACTT
TCTCTAACCCCCACGTGCTCCCCAGAGAGCTCCAGAGGTGGGGAATTTCCACAAGTGCCTTTCT
GACACAGAATGGAGAGGCAAGGGAGAAAACCTGGCAGTAGGACCTGCCAGGTCAACCCAACCCC
AACTCCAAACCAGTGTGGGCTCCTGCCCTGCAGGTCCCATCCAGAGGCCCAAAAGTCACTGTGG
GATTGGGGATCCCCATGTTCCCTTTCCCCCAACCTCAGTGGACCTAAGTGTCTTCCAGATCCTG
TATCTACTCTCCAGGGCTGCCCACTGCTCCAGGCTCTGCGAGTGGGCGTTTTCAGGTGCCAACG
AGACACTTTGTTCCCTCTGCTCATAGAAGAAGCAGCTCTGTCCAGTACACTTGTGTGGGCTGGG
TGCATTGTAAAATGGCAGGAGTAACAGACATACATGTGATATGATGGCGCCCCACCCTGAGCTT
GTGAAACACGTGAGCCTGGATAGAATTGTAGCGGAGGAATAAAGGCAGAAGTCACAGTCAGCGT
CTTGAGACCTAGGCCTTGGTAAGTGTGGATTACATGAGGAGGGACCAATAAACACTGTTTACCA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239262 ⟹ XP_006239324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,499,739 - 156,577,967 (+)	NCBI
mRatBN7.2	5	151,216,502 - 151,294,103 (+)	NCBI
Rnor_6.0	5	157,421,738 - 157,501,104 (+)	NCBI
Rnor_5.0	5	161,161,634 - 161,240,398 (+)	NCBI

Sequence:

show sequence

CTATCACTGAGCTAAATCCCCAACCCTCTGTTCTGTGACTTCTATTCTAAAACGATTTTCCCTA
TTGATTTCATGTATCTATTGCTACTCTTTTCTCCATTGGCGAGTGATCCCCCCCTTTTTTTTAA
CTTTCCGAGTTACCTTTATATCAAGAACTTACTAAATCAGCTTATGCTAAAATAGAAACGGCAG
CTGTCTCACACCTGGAAGGCTGAGGTTGTAAGTTGCCCAGGCTGAGGCTGGCTACTTCAGCCCA
GAACCCCTTCTTAATTGGGGGCTGCTGGCCACTCCAGTCCTGCATTCCCCATAGCCAACAACAG
GATCTTCTAAAAATCCGTGTGTTTTTTGTTTTTTTGTTTTTTTTTTTTGGTGGGGAGGTGCCAT
CTTGGTATGGCCATTGCCCCACCTTAGTGACGCCCAGAATCTCAGCTAGAATCCCATCCCTCAA
CCTTCCACAATTGACCCTTTTGACCTACAATAACCCTCTAGCTGGTCTAGGTCCTGATTGGCTA
CGATAGGGAGATCAGGTGATGGAGGCCCCATAATGTTCCAGAAGGATCCTGAGTCACAGGCTCC
CGGCTGGAATGCCGCACATCTGACCGGTCTGCTCACGGTACTTTTTCCACTTACAACTCCAAAC
TGTCTTCTCCAGGAGAAAGAGCAACGGCATTAGAGGTCATGGTGATTCATACTCCAGCCCTGAC
CAGGGCGGCCGCCTACTTCCTCACCAGCTCACCAGTAGACTAGGTGTGAGGAAAATTCACAGGT
TGCCAGGGCAACAAGAACTCCTCCCAAGTGCGGTTGTACGGTCCCAGAGGCATGGGAGACCTCC
ATTCCTGAGGCTTTTAACTTCTAGTGTGTGACACTCTGATTGTAAATTGGCAAACAAGAAAACG
ATCAACTTTAGAGTGTTAAGTACCACGATTAAAATATCATGGATCGAATCCATAGCCTTGGGAC
AGAACCTGACACATAGTAGGTGCTCAGCAAATATTTGTTCAATGGCTAGAACTGAGTGGGTGGC
TAGTCTCACAGGAATGGAACACCCAAAACGGAGGCCTGTGGGACGTTAGAGCCGCGGGTGCAAA
CACTGGCGAGCATTAGAGAAAGTGAAAGAAGAAATAAGAAGGCGTGGATGTTGCAAACTTCACC
CGGCAATGTGTACGGGAAGGGGGGGGGGAGAGGCTGCTTCTGGGACAGGCTCTTTCCGTGTGGC
GGCAAAATTTGGAAGCTTCCCCTTCAAGTGTCTGCGTGTACTCCCCTCCAGCCAGCCGAGCCCC
TGGCGAGCACTTTCTGCAGAGTCCTCCCGTGCCCCGCGCTCCCAAGTCTTGGGGTTGGGAGGCC
AGCACCCGGGCGATGGTTTTGATGGCTTAGGTGGCGGTGCGCCCGGCCCAGCCCGGAAGACCAG
GGCTCTGGGGCTGCGCAGGCGGGACCGGCCCAGGCCGGTGTGGGGCGGCTGGGCAAGAGCGAGG
ACGGGCGGGGAGAGCGGAGGCGGGAGCAGCGGGGCCTCTGGGATCCTAGTCACCGTCCCATCCG
TCGCTGTCGCCTCCAGAGTGATTTGCATATTTCCTTGAAGAACCCAGTGAAGCTGCACAGCCTG
TCCTTGGACTTACAAGAGGGACGCCTACGCCCCTGTTGGTTCTCCAGAATTGGGAGCTGGGAAT
GGCCACATGGAACCGGCCGCACCCAAGGCTGCCTGTGGCACCAGAGCCAGTTGCAGAAGGGGAG
TCCCAGCAGCCCCTGGGGCGAGAGCTCTCGGAGGCCAACCGTTTTGCCTATGCCGCCCTGTGTG
GCATCTCTTTGTCACAGCTGTTTCCAGAACCTGAGCAAAGCTCCTTCTGCTCAGAATTTGTGAC
GGGCCTGGTGAAATGGTTGCATCTGTCTGAAACTGTCCTCCCAACCATGATGGCCTTTGCCAGC
GGCCTGGGAGGCAAAGGAGATGACATCTTTGCTCAGACTTTATTGAAGGACCCCATTCTGAAAG
ACAACCCATCAGCCATCAGTCAGGACCTCCTGAGCTTCTCACTCAAGGATGGGCACTACGATGC
CCGAGCCAGAGTCCTCGTTTGTCATGTGACCTCCCTGCTCCAGGTGCCCATGGAGGAGCTTGAT
ATTCTCGAAGAGGTGTTCCTGGAGAGCCTGAAGGACGCCAAAGAGGAGGAGTCTGAGACCGCAG
AGGAGTCCCGGAAGAGAAAAGAAAAAAGGAGGAAGTGGAAGCGCTATCTCCTGATTGGCCTGGC
CACAGTTGGAGGCGGGACAGTGATTGGTGTGACAGGGGGCCTAGCTGCCCCCCTTGTTGCCGCC
GGAGCTGCGACAATTATAGGCAGCGCTGGGGCAGCTGCGTTGGGCTCCGTGGCTGGCATCGCTG
TTATGACCTCACTGTTTGGTGCAGCCGGAGCTGGCCTGACAGGATACAAGATGAAGAAGCGAGT
CGGGGCCATTGAGGAGTTCATGTTCCTGCCTCTGACGGAAGGCAAGCAGCTACATATCACCATC
GCCATCACTGGCTGGCTCGGGTCCGGCAGATACCGTACATTCAATGCCCCATGGATGGCCCTAG
CCCGCAGCCAGGAGCAGTACTGCCTGGCCTGGGAGGCCAAGTACCTGATGGAGTTGGGCAATGC
CCTGGAGACCATTCTCAGTGGCCTCGCTAACATGGTGGCCCAGGAGGCTCTCAAGTACACCGTG
CTCTCTGGTATCGTGGCTGCTCTAACCTTGCCGGCCTCCCTCCTCAGCGTCGCCAATGTCATCG
ACAACCCCTGGGGGGTGTGTCTCCACCGGTCTGCTGAGGTTGGCAAGCACCTAGCACACATCCT
TCTCTCGAGGCAACAGGGCCGGAGGCCTGTCACCTTGATTGGATTCAGCCTGGGAGCCAGAGTC
ATCTACTTCTGTCTGCAAGAGATGGCTCAGGAGCAAGATTGCCAAGGGATCATCGAGGATGTTG
TCCTTCTGGGTGCACCAGTAGAGGGGGACCCCAAGTACTGGGAACCGTTCCGGAATGTGGTGTC
TGGGAGAATCATCAACGGCTACTGCAGGGGAGACTGGCTGCTGAGTTTCGTGTACCGCACATCT
TCTGTGCAGCTCCGCGTCGCAGGCCTCCAGCCTGTGCTGTTGCAGGACCGGAGGATGGAGAACG
TGGACCTGTCCTCAGTGGTCAATGGCCACTTGGACTATGCCAAGAAAATGGATGTCATCCTGAA
GGCTGTGGGCATCCGCACCAAGCCTGGCTGGAGTGAGAAGGGACTCCCACTGGCCCCTGGCGGC
CTGCCGCAAGAAGAGCCTCTCCAGCCAGCCACAGTCTCCACAGATGAGACAATCCACCAGGATG
AACAAAAGCAGGGACCTGCCCCAGGAGACAGTCTCAAATCCGCCATTCCTTCCAGTGCCAGCCA
AGCCCAGGTGCCAGCAGGGCTGGACCAATCCACAGAGGACTCGCTCCCTGCTGCCGCTGCACCA
GCAGAGGGGCACCTGGTCTGCAGCCATGGTGTGGGGCCCAACCCACTGGGCTGCCCTGACTGCA
CCCGTGAGACCCAGGAGTCCTGTGCAGAACTAGACTGACCCTGCAGGCATCTGGACTACTCTCC
AGACGCCTCTATGCAACTTTCTCTAACCCCCACGTGCTCCCCAGAGAGCTCCAGAGGTGGGGAA
TTTCCACAAGTGCCTTTCTGACACAGAATGGAGAGGCAAGGGAGAAAACCTGGCAGTAGGACCT
GCCAGGTCAACCCAACCCCAACTCCAAACCAGTGTGGGCTCCTGCCCTGCAGGTCCCATCCAGA
GGCCCAAAAGTCACTGTGGGATTGGGGATCCCCATGTTCCCTTTCCCCCAACCTCAGTGGACCT
AAGTGTCTTCCAGATCCTGTATCTATTCTCCAGGGCTGCCCACTGCTCCAGGCTCCGCGAGTGG
GCGTTTTCAGGTGCCAACGAGACACTTTGTTCCCTCTGCTCATAGAAGAAGCAGCTCTGTCCAG
TACACTTGTGTGGGCTGGGTGCATTGTAAAATGGCAGGAGTAACAGACATACATGTGATATGAT
GGCGCCCCACCCTGAGCTTGTGAAACACGTGAGCCTGGATAGAATTGTAGCGGAGGAATAAAGG
CAGAAGTCACAGTCAGCGTCTTGAGACCTAGGCCTTGGTAAGTGTGGATTACATGAGGAGGGAC
CAATAAACACTGTTTACCACA

hide sequence

RefSeq Acc Id:

XM_039110633 ⟹ XP_038966561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,498,506 - 156,568,914 (+)	NCBI
mRatBN7.2	5	151,216,499 - 151,285,346 (+)	NCBI

RefSeq Acc Id:

XM_039110634 ⟹ XP_038966562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,498,513 - 156,565,706 (+)	NCBI
mRatBN7.2	5	151,216,501 - 151,279,365 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030121	(Get FASTA)	NCBI Sequence Viewer
	XP_006239324	(Get FASTA)	NCBI Sequence Viewer
	XP_038966561	(Get FASTA)	NCBI Sequence Viewer
	XP_038966562	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99755	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023431
GenBank Protein	Q499U8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001030121 ⟸ NM_001034949

- UniProtKB:

Q499U8 (UniProtKB/Swiss-Prot), A0A0G2K6T2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATWNRPHPRLPVAPEPVAEGESQQPLGRELSEANRFAYAALCGISLSQLFPEPEQSSFCSEFV
TGLVKWLHLSETVLPTMMAFASGLGGKGDDIFAQTLLKDPILKDNPSAISQDLLSFSLKDGHYD
ARARVLVCHVISLLQVPMEELDILEEVFLESLKDAKEEESETAEESRKRKEKRRKWKRYLLIGL
ATVGGGTVIGVTGGLAAPLVAAGAATIIGSAGAAALGSVAGIAVMTSLFGAAGAGLTGYKMKKR
VGAIEEFMFLPLTDGKQLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGN
ALETILSGLANMVAQEALKYTVLSGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHI
LLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVV
SGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDVIL
KAVGIRTKPGWSEKGLPLAPGGLPQEEPLQPATVSTDETIHQDEQKQGPAPGDSLKSAIPSSAS
QAQVPAGLDQSTEDSLPAAAAPAEGHLVCSHGVGPNPLGCPDCTRETQESCAELD

hide sequence

RefSeq Acc Id:	XP_006239324 ⟸ XM_006239262
- Peptide Label:	isoform X1
- UniProtKB:	F1LRM3 (UniProtKB/TrEMBL), A0A0G2K6T2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATWNRPHPRLPVAPEPVAEGESQQPLGRELSEANRFAYAALCGISLSQLFPEPEQSSFCSEFV TGLVKWLHLSETVLPTMMAFASGLGGKGDDIFAQTLLKDPILKDNPSAISQDLLSFSLKDGHYD ARARVLVCHVTSLLQVPMEELDILEEVFLESLKDAKEEESETAEESRKRKEKRRKWKRYLLIGL ATVGGGTVIGVTGGLAAPLVAAGAATIIGSAGAAALGSVAGIAVMTSLFGAAGAGLTGYKMKKR VGAIEEFMFLPLTEGKQLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGN ALETILSGLANMVAQEALKYTVLSGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHI LLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVV SGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDVIL KAVGIRTKPGWSEKGLPLAPGGLPQEEPLQPATVSTDETIHQDEQKQGPAPGDSLKSAIPSSAS QAQVPAGLDQSTEDSLPAAAAPAEGHLVCSHGVGPNPLGCPDCTRETQESCAELD hide sequence

Ensembl Acc Id:

ENSRNOP00000023431 ⟸ ENSRNOT00000023431

Ensembl Acc Id:

ENSRNOP00000073933 ⟸ ENSRNOT00000088556

RefSeq Acc Id:	XP_038966561 ⟸ XM_039110633
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038966562 ⟸ XM_039110634
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q499U8-F1-model_v2	AlphaFold	Q499U8	1-631	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694197

Promoter ID:

EPDNEW_R4722

Type:

initiation region

Name:

Tmco4_1

Description:

transmembrane and coiled-coil domains 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	157,423,234 - 157,423,294	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566357	AgrOrtholog
BioCyc Gene	G2FUF-39433	BioCyc
Ensembl Genes	ENSRNOG00000017401	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000023431	ENTREZGENE
IMAGE_CLONE	IMAGE:5623720	IMAGE-MGC_LOAD
InterPro	AB_hydrolase	UniProtKB/Swiss-Prot
	DUF726	UniProtKB/Swiss-Prot
KEGG Report	rno:500573	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124660	IMAGE-MGC_LOAD
NCBI Gene	500573	ENTREZGENE
PANTHER	PTHR17920	UniProtKB/Swiss-Prot
	TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4	UniProtKB/Swiss-Prot
Pfam	DUF726	UniProtKB/Swiss-Prot
PhenoGen	Tmco4	PhenoGen
RatGTEx	ENSRNOG00000017401	RatGTEx
Superfamily-SCOP	SSF53474	UniProtKB/Swiss-Prot
UniProt	A0A0G2K6T2	ENTREZGENE, UniProtKB/TrEMBL
	F1LRM3	ENTREZGENE, UniProtKB/TrEMBL
	Q499U8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Tmco4	transmembrane and coiled-coil domains 4	LOC690449	hypothetical protein LOC690449	Data merged from RGD:1596059	737654	PROVISIONAL
2013-05-24	Tmco4	transmembrane and coiled-coil domains 4	LOC100359473	rCG31182-like	Data merged from RGD:2323820	1643240	APPROVED
2010-05-06	LOC100359473	rCG31182-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-05	Tmco4	transmembrane and coiled-coil domains 4	LOC500573	similar to RIKEN cDNA 4632413C14	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690449	hypothetical protein LOC690449			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	LOC500573	similar to RIKEN cDNA 4632413C14			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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