Aldh16a1 (aldehyde dehydrogenase 16 family, member A1)

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Gene: Aldh16a1 (aldehyde dehydrogenase 16 family, member A1) Rattus norvegicus

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Symbol:

Aldh16a1

Name:

aldehyde dehydrogenase 16 family, member A1

RGD ID:

1566295

Description:

Predicted to enable oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor. Orthologous to human ALDH16A1 (aldehyde dehydrogenase 16 family member A1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

aldehyde dehydrogenase 16A1; aldehyde dehydrogenase family 16 member A1; LOC361571; MGC124726; similar to RIKEN cDNA 2410004H02

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	104,763,200 - 104,776,270 (-)	NCBI		GRCr8
mRatBN7.2	1	95,626,727 - 95,639,808 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,613,558 - 95,640,131 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	101,012,129 - 101,025,199 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,484,796 - 109,497,866 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	102,775,205 - 102,788,275 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,138,237 - 101,151,320 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,138,248 - 101,151,320 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	102,203,185 - 102,216,266 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,617,726 - 95,630,798 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	89,885,002 - 89,898,088 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 12 (ISO)

gout (ISO)

HRPT-related hyperuricemia (ISO)

hyperuricemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

7,9-dihydro-1H-purine-2,6,8(3H)-trione (ISO)

acrolein (ISO)

acrylamide (EXP)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

cisplatin (ISO)

coumestrol (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

enzyme inhibitor (ISO)

ethanol (EXP)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (ISO)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

methimazole (EXP)

ozone (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

temozolomide (ISO)

titanium dioxide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19946888	PMID:23376485

Genomics

Comparative Map Data

Aldh16a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	104,763,200 - 104,776,270 (-)	NCBI		GRCr8
mRatBN7.2	1	95,626,727 - 95,639,808 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	95,613,558 - 95,640,131 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	101,012,129 - 101,025,199 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,484,796 - 109,497,866 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	102,775,205 - 102,788,275 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,138,237 - 101,151,320 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,138,248 - 101,151,320 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	102,203,185 - 102,216,266 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,617,726 - 95,630,798 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	89,885,002 - 89,898,088 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

ALDH16A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	49,453,225 - 49,471,050 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	49,453,225 - 49,471,050 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	49,956,482 - 49,974,307 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,648,325 - 54,665,658 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	54,648,324 - 54,665,657	NCBI
Celera	19	46,823,977 - 46,843,666 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	46,333,113 - 46,351,952 (+)	NCBI		HuRef
CHM1_1	19	49,958,287 - 49,975,578 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	52,450,669 - 52,471,023 (+)	NCBI		T2T-CHM13v2.0

Aldh16a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	44,791,257 - 44,804,008 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	44,790,108 - 44,804,008 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	45,141,833 - 45,154,536 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,140,684 - 45,154,584 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	52,397,210 - 52,409,908 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	45,009,882 - 45,022,580 (-)	NCBI		MGSCv36	mm8
Celera	7	40,597,764 - 40,610,426 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.15	NCBI

Aldh16a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,376,977 - 1,390,841 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	1,376,862 - 1,390,861 (-)	NCBI	ChiLan1.0	ChiLan1.0

ALDH16A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	55,569,730 - 55,586,177 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	57,489,494 - 57,506,514 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	46,466,683 - 46,483,567 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	55,388,896 - 55,407,261 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	55,389,095 - 55,406,684 (+)	Ensembl	panpan1.1		panPan2

ALDH16A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	107,032,164 - 107,046,348 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	107,032,192 - 107,047,197 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	106,615,434 - 106,629,610 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	107,552,230 - 107,566,404 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	107,552,230 - 107,566,414 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	107,225,270 - 107,239,417 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	106,867,541 - 106,881,750 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	107,708,448 - 107,722,622 (-)	NCBI		UU_Cfam_GSD_1.0

Aldh16a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,708,332 - 21,720,819 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936664	3,326,570 - 3,339,683 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936664	3,326,527 - 3,339,009 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALDH16A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,529,468 - 54,548,144 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	54,528,905 - 54,551,645 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	50,258,523 - 50,276,972 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALDH16A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	42,633,097 - 42,650,961 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	42,633,477 - 42,650,395 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	22,561,045 - 22,580,692 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aldh16a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	4,742,264 - 4,757,485 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	4,740,504 - 4,757,577 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Aldh16a1
29 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	65
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000027992
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	85424647	100358001	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	94494440	117601394	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	90532338	123479925	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	90664883	143200202	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	83547917	128547917	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	92184926	137184926	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat

Markers in Region

AI113017

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	95,626,769 - 95,626,954 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	101,138,280 - 101,138,464	NCBI	Rnor6.0
Rnor_5.0	1	102,203,228 - 102,203,412	UniSTS	Rnor5.0
RGSC_v3.4	1	95,617,758 - 95,617,942	UniSTS	RGSC3.4
Celera	1	89,885,034 - 89,885,218	UniSTS
RH 3.4 Map	1	908.29	UniSTS
Cytogenetic Map	1	q22	UniSTS

RH130045

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	95,640,127 - 95,640,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	101,151,640 - 101,151,827	NCBI	Rnor6.0
Rnor_5.0	1	102,216,586 - 102,216,773	UniSTS	Rnor5.0
RGSC_v3.4	1	95,631,118 - 95,631,305	UniSTS	RGSC3.4
Celera	1	89,898,408 - 89,898,595	UniSTS
RH 3.4 Map	1	909.6	UniSTS
Cytogenetic Map	1	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC064653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC101860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027992 ⟹ ENSRNOP00000027992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,626,739 - 95,639,661 (-)	Ensembl
Rnor_6.0 Ensembl	1	101,138,248 - 101,151,320 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,138,631 - 101,139,260 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093319 ⟹ ENSRNOP00000076100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,626,749 - 95,639,835 (-)	Ensembl
Rnor_6.0 Ensembl	1	101,138,248 - 101,151,308 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,144,799 - 101,151,039 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093474 ⟹ ENSRNOP00000076272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,143,698 - 101,151,288 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,141,460 - 101,142,350 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,143,920 - 101,151,048 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107469 ⟹ ENSRNOP00000096018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,626,739 - 95,640,131 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108838 ⟹ ENSRNOP00000080497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,613,558 - 95,640,131 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109143 ⟹ ENSRNOP00000087100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	95,626,733 - 95,639,835 (-)	Ensembl

RefSeq Acc Id:

NM_001033706 ⟹ NP_001028878

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,763,200 - 104,776,270 (-)	NCBI
mRatBN7.2	1	95,626,738 - 95,639,808 (-)	NCBI
Rnor_6.0	1	101,138,248 - 101,151,320 (-)	NCBI
Rnor_5.0	1	102,203,185 - 102,216,266 (-)	NCBI
RGSC_v3.4	1	95,617,726 - 95,630,798 (-)	RGD
Celera	1	89,885,002 - 89,898,088 (-)	RGD

Sequence:

show sequence

CCAAGTTCCTCTAGGTAGAACGTTCAGCAGTCCTTCGCGGAAGGCGTTCGGCGAGAGATGGCGG
CTACGCGTATACAGCCCTCTACCCGTGAGATTTTCACGACGCTGGAGTACGGACCGGTGCCGGA
GAGCCACGCATGCGCACTGGCCTGGCTGGACACCCACAATCGCCTCTTGGGCCACTATGTCAAT
GGGATGTGGCTGAAGCCAGAACACAGGAATCCAGCGCCTTGCCAGGATCCCATCACAGGAGAAA
ACCTGGCCAGCTGCCTGCAAGCAGAGGCCGAGGACATCTCTGCAGCTGTGGAGGCTGCAAGGAT
AACATTCAAGACCTGGAGCCAACTCCCTGGAACTGCTCGGGGCCAACATCTAACCCGGCTAGCC
AAGGTTATTCAGAAGCACCAGCGCCTGCTGTGGACCCTGGAGTCCCTGGTCACTGGGCGGGCTG
TTCGAGAAGTTCGAGATGGGGATATACCACTGGCGCAGCAACTGCTCCACTACCATGCCCTCCA
GGCACATGCGCAGGATAGCGCACTGGCAGACTGGGAGCCCTTGGGAGTCATTGGCCTCATCCTG
CCGACTTCTTTCTCATTCTTGGACATGATGTGGAGGGTCTGTCCTGCCTTGGCTATGGGCTGCA
CTGTGGTGGCCCTTGTGCCCCCATCCTTCCCAACACCTCTCCTCCTGGCTCAGCTGGCAGGGGA
GCTTGGCTCCTTCCCAGGGATCCTCAATGTGGTATGTGGCCCTGTCTCACTGGGGCCTGTCCTG
GCCTCCCAACCTGGAGTGCAGAAGGTGGCCTTCTGTGGCGCTGTGGAGGAAGGACGTGCTCTAC
GACAGACTCTAGCAGGCAGGGGAGCCACACTGGGCCTGGCCCTGGGCACAGAGTCCCTGTTGCT
GCTAACAGACTCAGCAGATGTGGACTCGGCTGTGGAGGGTGTTGTAGATGCTGTCTGGTCAGAC
CGCAGCCTGGGGGGACTCAGGCTCCTCATCCAGGAATCTGTATGGGATGAAGCTATGAAGCGAC
TCCAGGCCAGGATGGCACAGATACGGAGCGGGAAAGGACTGGATGGGGCTGTGGACATGGGGGC
TCGAGGAGCTGCTGCCCGAGACCTTGCCCAGAGCTTTGTGGATGAGGCCCAAAGCCAGGGTGGA
CAGGTATTCCAAGCTGGTGATATGCCCTCCAACAGCCCCTTCTTCTCTCCAACCTTGGTCTCTG
GTCTTCCTCCAGCAGCCCCATGTGCCCAGGCTGAGGTGCCGTGGCCTGTGGTTATGGCTTCACC
TTTCCGCACAGTCAAGGAGGCACTGGCCCTGGCCAATGGAACACCCCGGGGAGGCAGCGCCAGT
GTGTGGAGTGAGAGGCTAGGGCAGGCCCTGGAGCTGGGCTATGGGCTCCAGGTAGGCACAGTAT
GGATCAATGCTCATGGCCTCCGAGACCCTGCGGTGCCTACAGGTGGCTGCAAGGAGAGTGGGTC
TTCCTGGCATGGAGGGCCAGATGGCCTATATGAGTACCTACAGCTCCTGGGAACACCTTACCGG
GAGTCCTTCCTTTGTGAGAGTCTCAACTATGACACATTTGGCCTTGCTGTGTCCTCCAGCCTGC
CGTCTGGGCCAGAAACAGGGCCAAGCCCAGCACCTCCCTATGGGCTGTTTGTCAGGGGCCGTTT
CCAGTCTCCTGGGACCCAGAGCTCCAGGCCCATCAAAGATTCTTCGGGCAAAGTCTCCAGCTAT
GTAGCTGAGGGTGGAGCCAAGGATATCCGAGGTGCTGTGGAGGCCGCTCATCAGGCTGCCCCTG
GCTGGGGAGCCCAGTCTCCAAGGGCCCGAGCAAGCCTGCTGTGGGCCCTGGCGGCTGCTCTGGA
GCGGAGGAAGCAAGTCCTGGCCGCACAGCTAGAGAGGCACGGAGCGGCGCCTACGGTTGCGGAG
ACTGAAGTGGAGCTGAGTGTGAGGCGACTCCAGACATGGGCCACCCGGGTTCAGGACCAAGGCC
AGACACTACAGGTAACAGGATTGAGAGGCCCTGTGCTCCGGCTTCGAGAGCCACTAGGAGTGCT
GGCTGTGGTGTGCCCAGATGAGTGGCCGATGCTGGCTTTTGTGTCACTACTAGCCCCTGCACTG
GCCCATGGCAACGCTGTGGTCTTAGTACCTAGTGGATCATGTCCTCTGCTGGCCTTGGAAGCCT
GTCAGGATATAGCTGCTCTGTTTCCTGCTGGCCTGGTGAACGTAGTGACAGGAGATCGGGACCA
TCTGACCCGCTGTCTGGCCTTACATCAGGATGTCCAGGCCATGTGGTACTTTGGTTCAGCCCAG
GGCTCCCAGTTTGTGGAATGGGCCTCTGCAGGAAACCTCAAGCCCGTGTGGGTAAACAGGGACT
TCCCAAGGGCCTGGGATGTGGAAGTCCAAGGGTCAGAACAGGAGCTGAGTCTTCATGCAGCACG
AACCAAGGCCCTGTGGCTGCCAATGGGGGACTGAGGTCGAAGCCACCCACTCCATCTTTCATGC
CAGGGACACCAAGTGCTTGGAACGTTTCTCTCAGATTTCCCATGACTTCAAATAAACTGAGTGA
CATTGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006229100 ⟹ XP_006229162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,763,200 - 104,776,261 (-)	NCBI
mRatBN7.2	1	95,626,727 - 95,639,798 (-)	NCBI
Rnor_6.0	1	101,138,237 - 101,151,282 (-)	NCBI
Rnor_5.0	1	102,203,185 - 102,216,266 (-)	NCBI

Sequence:

show sequence

GGAAGGCGTTCGGCGAGAGATGGCGGCTACGCGTATACAGCCCTCTACCCGTGAGATTTTCACG
ACGCTGGAGTACGGACCGGTGCCGGAGAGCCACGCATGCGCACTGGAGAAAACCTGGCCAGCTG
CCTGCAAGCAGAGGCCGAGGACATCTCTGCAGCTGTGGAGGCTGCAAGGATAACATTCAAGACC
TGGAGCCAACTCCCTGGAACTGCTCGGGGCCAACATCTAACCCGGCTAGCCAAGGTTATTCAGA
AGCACCAGCGCCTGCTGTGGACCCTGGAGTCCCTGGTCACTGGGCGGGCTGTTCGAGAAGTTCG
AGATGGGGATATACCACTGGCGCAGCAACTGCTCCACTACCATGCCCTCCAGGCACATGCGCAG
GATAGCGCACTGGCAGACTGGGAGCCCTTGGGAGTCATTGGCCTCATCCTGCCGACTTCTTTCT
CATTCTTGGACATGATGTGGAGGGTCTGTCCTGCCTTGGCTATGGGCTGCACTGTGGTGGCCCT
TGTGCCCCCATCCTTCCCAACACCTCTCCTCCTGGCTCAGCTGGCAGGGGAGCTTGGCTCCTTC
CCAGGGATCCTCAATGTGGTATGTGGCCCTGTCTCACTGGGGCCTGTCCTGGCCTCCCAACCTG
GAGTGCAGAAGGTGGCCTTCTGTGGCGCTGTGGAGGAAGGACGTGCTCTACGACAGACTCTAGC
AGGCAGGGGAGCCACACTGGGCCTGGCCCTGGGCACAGAGTCCCTGTTGCTGCTAACAGACTCA
GCAGATGTGGACTCGGCTGTGGAGGGTGTTGTAGATGCTGTCTGGTCAGACCGCAGCCTGGGGG
GACTCAGGCTCCTCATCCAGGAATCTGTATGGGATGAAGCTATGAAGCGACTCCAGGCCAGGAT
GGCACAGATACGGAGCGGGAAAGGACTGGATGGGGCTGTGGACATGGGGGCTCGAGGAGCTGCT
GCCCGAGACCTTGCCCAGAGCTTTGTGGATGAGGCCCAAAGCCAGGGTGGACAGGTATTCCAAG
CTGGTGATATGCCCTCCAACAGCCCCTTCTTCTCTCCAACCTTGGTCTCTGGTCTTCCTCCAGC
AGCCCCATGTGCCCAGGCTGAGGTGCCGTGGCCTGTGGTTATGGCTTCACCTTTCCGCACAGTC
AAGGAGGCACTGGCCCTGGCCAATGGAACACCCCGGGGAGGCAGCGCCAGTGTGTGGAGTGAGA
GGCTAGGGCAGGCCCTGGAGCTGGGCTATGGGCTCCAGGTAGGCACAGTATGGATCAATGCTCA
TGGCCTCCGAGACCCTGCGGTGCCTACAGGTGGCTGCAAGGAGAGTGGGTCTTCCTGGCATGGA
GGGCCAGATGGCCTATATGAGTACCTACAGCTCCTGGGAACACCTTACCGGGAGTCCTTCCTTT
GTGAGAGTCTCAACTATGACACATTTGGCCTTGCTGTGTCCTCCAGCCTGCCGTCTGGGCCAGA
AACAGGGCCAAGCCCAGCACCTCCCTATGGGCTGTTTGTCAGGGGCCGTTTCCAGTCTCCTGGG
ACCCAGAGCTCCAGGCCCATCAAAGATTCTTCGGGCAAAGTCTCCAGCTATGTAGCTGAGGGTG
GAGCCAAGGATATCCGAGGTGCTGTGGAGGCCGCTCATCAGGCTGCCCCTGGCTGGGGAGCCCA
GTCTCCAAGGGCCCGAGCAAGCCTGCTGTGGGCCCTGGCGGCTGCTCTGGAGCGGAGGAAGCAA
GTCCTGGCCGCACAGCTAGAGAGGCACGGAGCGGCGCCTACGGTTGCGGAGACTGAAGTGGAGC
TGAGTGTGAGGCGACTCCAGACATGGGCCACCCGGGTTCAGGACCAAGGCCAGACACTACAGGT
AACAGGATTGAGAGGCCCTGTGCTCCGGCTTCGAGAGCCACTAGGAGTGCTGGCTGTGGTGTGC
CCAGATGAGTGGCCGATGCTGGCTTTTGTGTCACTACTAGCCCCTGCACTGGCCCATGGCAACG
CTGTGGTCTTAGTACCTAGTGGATCATGTCCTCTGCTGGCCTTGGAAGCCTGTCAGGATATAGC
TGCTCTGTTTCCTGCTGGCCTGGTGAACGTAGTGACAGGAGATCGGGACCATCTGACCCGCTGT
CTGGCCTTACATCAGGATGTCCAGGCCATGTGGTACTTTGGTTCAGCCCAGGGCTCCCAGTTTG
TGGAATGGGCCTCTGCAGGAAACCTCAAGCCCGTGTGGGTAAACAGGGACTTCCCAAGGGCCTG
GGATGTGGAAGTCCAAGGGTCAGAACAGGAGCTGAGTCTTCATGCAGCACGAACCAAGGCCCTG
TGGCTGCCAATGGGGGACTGAGGTCGAAGCCACCCACTCCATCTTTCATGCCAGGGACACCAAG
TGCTTGGAACGTTTCTCTCAGATTTCCCATGACTTCAAATAAACTGAGTGACATTGACTTTGAC
TACA

hide sequence

RefSeq Acc Id:

XM_039082201 ⟹ XP_038938129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	104,763,200 - 104,770,972 (-)	NCBI
mRatBN7.2	1	95,626,727 - 95,634,506 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001028878	(Get FASTA)	NCBI Sequence Viewer
	XP_006229162	(Get FASTA)	NCBI Sequence Viewer
	XP_038938129	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01861	(Get FASTA)	NCBI Sequence Viewer
	EDM07398	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027992.5
	ENSRNOP00000076100.2
	ENSRNOP00000080497.1
	ENSRNOP00000087100.1
	ENSRNOP00000096018.1
GenBank Protein	Q3T1L0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001028878 ⟸ NM_001033706

- UniProtKB:

Q3T1L0 (UniProtKB/Swiss-Prot), A6JAY6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAATRIQPSTREIFTTLEYGPVPESHACALAWLDTHNRLLGHYVNGMWLKPEHRNPAPCQDPIT
GENLASCLQAEAEDISAAVEAARITFKTWSQLPGTARGQHLTRLAKVIQKHQRLLWTLESLVTG
RAVREVRDGDIPLAQQLLHYHALQAHAQDSALADWEPLGVIGLILPTSFSFLDMMWRVCPALAM
GCTVVALVPPSFPTPLLLAQLAGELGSFPGILNVVCGPVSLGPVLASQPGVQKVAFCGAVEEGR
ALRQTLAGRGATLGLALGTESLLLLTDSADVDSAVEGVVDAVWSDRSLGGLRLLIQESVWDEAM
KRLQARMAQIRSGKGLDGAVDMGARGAAARDLAQSFVDEAQSQGGQVFQAGDMPSNSPFFSPTL
VSGLPPAAPCAQAEVPWPVVMASPFRTVKEALALANGTPRGGSASVWSERLGQALELGYGLQVG
TVWINAHGLRDPAVPTGGCKESGSSWHGGPDGLYEYLQLLGTPYRESFLCESLNYDTFGLAVSS
SLPSGPETGPSPAPPYGLFVRGRFQSPGTQSSRPIKDSSGKVSSYVAEGGAKDIRGAVEAAHQA
APGWGAQSPRARASLLWALAAALERRKQVLAAQLERHGAAPTVAETEVELSVRRLQTWATRVQD
QGQTLQVTGLRGPVLRLREPLGVLAVVCPDEWPMLAFVSLLAPALAHGNAVVLVPSGSCPLLAL
EACQDIAALFPAGLVNVVTGDRDHLTRCLALHQDVQAMWYFGSAQGSQFVEWASAGNLKPVWVN
RDFPRAWDVEVQGSEQELSLHAARTKALWLPMGD

hide sequence

RefSeq Acc Id:	XP_006229162 ⟸ XM_006229100
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GLW4 (UniProtKB/TrEMBL), A0A8L2QFC7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTGENLASCLQAEAEDISAAVEAARITFKTWSQLPGTARGQHLTRLAKVIQKHQRLLWTLESL VTGRAVREVRDGDIPLAQQLLHYHALQAHAQDSALADWEPLGVIGLILPTSFSFLDMMWRVCPA LAMGCTVVALVPPSFPTPLLLAQLAGELGSFPGILNVVCGPVSLGPVLASQPGVQKVAFCGAVE EGRALRQTLAGRGATLGLALGTESLLLLTDSADVDSAVEGVVDAVWSDRSLGGLRLLIQESVWD EAMKRLQARMAQIRSGKGLDGAVDMGARGAAARDLAQSFVDEAQSQGGQVFQAGDMPSNSPFFS PTLVSGLPPAAPCAQAEVPWPVVMASPFRTVKEALALANGTPRGGSASVWSERLGQALELGYGL QVGTVWINAHGLRDPAVPTGGCKESGSSWHGGPDGLYEYLQLLGTPYRESFLCESLNYDTFGLA VSSSLPSGPETGPSPAPPYGLFVRGRFQSPGTQSSRPIKDSSGKVSSYVAEGGAKDIRGAVEAA HQAAPGWGAQSPRARASLLWALAAALERRKQVLAAQLERHGAAPTVAETEVELSVRRLQTWATR VQDQGQTLQVTGLRGPVLRLREPLGVLAVVCPDEWPMLAFVSLLAPALAHGNAVVLVPSGSCPL LALEACQDIAALFPAGLVNVVTGDRDHLTRCLALHQDVQAMWYFGSAQGSQFVEWASAGNLKPV WVNRDFPRAWDVEVQGSEQELSLHAARTKALWLPMGD hide sequence

Ensembl Acc Id:

ENSRNOP00000076100 ⟸ ENSRNOT00000093319

Ensembl Acc Id:

ENSRNOP00000076272 ⟸ ENSRNOT00000093474

Ensembl Acc Id:

ENSRNOP00000027992 ⟸ ENSRNOT00000027992

RefSeq Acc Id:	XP_038938129 ⟸ XM_039082201
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000096018 ⟸ ENSRNOT00000107469

Ensembl Acc Id:

ENSRNOP00000087100 ⟸ ENSRNOT00000109143

Ensembl Acc Id:

ENSRNOP00000080497 ⟸ ENSRNOT00000108838

Protein Domains

Aldehyde dehydrogenase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3T1L0-F1-model_v2	AlphaFold	Q3T1L0	1-802	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690030

Promoter ID:

EPDNEW_R551

Type:

single initiation site

Name:

AC099450_1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	101,131,287 - 101,131,347	EPDNEW

RGD ID:

13690031

Promoter ID:

EPDNEW_R552

Type:

initiation region

Name:

Aldh16a1_1

Description:

aldehyde dehydrogenase 16 family, member A1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	101,151,318 - 101,151,378	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566295	AgrOrtholog
BioCyc Gene	G2FUF-59709	BioCyc
Ensembl Genes	ENSRNOG00000020623	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027992.8	UniProtKB/TrEMBL
	ENSRNOT00000093319.2	UniProtKB/TrEMBL
	ENSRNOT00000107469.1	UniProtKB/TrEMBL
	ENSRNOT00000108838.1	UniProtKB/TrEMBL
	ENSRNOT00000109143.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7936953	IMAGE-MGC_LOAD
InterPro	Ald_DH/histidinol_DH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ald_DH_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ald_DH_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Aldehyde_DH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Aldehyde_DH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361571	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124726	IMAGE-MGC_LOAD
NCBI Gene	361571	ENTREZGENE
PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11699:SF211	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Aldedh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Aldh16a1	PhenoGen
PIRSF	Aldedh_dupl	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020623	RatGTEx
Superfamily-SCOP	SSF53720	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A1W2Q622_RAT	UniProtKB/TrEMBL
	A0A8I5ZPY0_RAT	UniProtKB/TrEMBL
	A0A8I6AFX6_RAT	UniProtKB/TrEMBL
	A0A8I6GLW4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QFC7	ENTREZGENE, UniProtKB/TrEMBL
	A16A1_RAT	UniProtKB/Swiss-Prot
	A6JAY6	ENTREZGENE, UniProtKB/TrEMBL
	Q3T1L0	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Aldh16a1	aldehyde dehydrogenase 16 family, member A1	LOC361571	similar to RIKEN cDNA 2410004H02	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC361571	similar to RIKEN cDNA 2410004H02			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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