Ttll7 (tubulin tyrosine ligase like 7) - Rat Genome Database

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Gene: Ttll7 (tubulin tyrosine ligase like 7) Rattus norvegicus
Analyze
Symbol: Ttll7
Name: tubulin tyrosine ligase like 7
RGD ID: 1566117
Description: Predicted to enable alpha-tubulin binding activity; beta-tubulin binding activity; and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to be located in 9+0 non-motile cilium. Predicted to be active in ciliary basal body. Orthologous to human TTLL7 (tubulin tyrosine ligase like 7); INTERACTS WITH 6-propyl-2-thiouracil; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC108350133; LOC310982; RGD1566117; similar to hypothetical protein FLJ23033; tubulin polyglutamylase TTLL7; tubulin polyglutamylase TTLL7-like; tubulin tyrosine ligase-like family, member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82238,425,786 - 238,549,296 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2238,426,076 - 238,545,960 (+)EnsemblGRCr8
mRatBN7.22235,765,786 - 235,889,047 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,765,835 - 235,885,047 (+)EnsemblmRatBN7.2
Rnor_6.02252,779,741 - 252,854,746 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,771,017 - 252,850,495 (+)Ensemblrn6Rnor6.0
Rnor_5.02271,259,539 - 271,381,625 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42245,076,731 - 245,194,146 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2227,740,142 - 227,862,013 (+)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
ketamine  (EXP)
lipopolysaccharide  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16901895   PMID:17360631   PMID:17499049   PMID:19152315   PMID:25959773  


Genomics

Comparative Map Data
Ttll7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82238,425,786 - 238,549,296 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2238,426,076 - 238,545,960 (+)EnsemblGRCr8
mRatBN7.22235,765,786 - 235,889,047 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,765,835 - 235,885,047 (+)EnsemblmRatBN7.2
Rnor_6.02252,779,741 - 252,854,746 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,771,017 - 252,850,495 (+)Ensemblrn6Rnor6.0
Rnor_5.02271,259,539 - 271,381,625 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42245,076,731 - 245,194,146 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2227,740,142 - 227,862,013 (+)NCBICelera
Cytogenetic Map2q44NCBI
TTLL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38183,865,024 - 83,999,132 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl183,865,024 - 83,999,164 (-)Ensemblhg38GRCh38
GRCh37184,330,707 - 84,464,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36184,107,645 - 84,237,421 (-)NCBIBuild 36Build 36hg18NCBI36
Celera182,585,810 - 82,715,708 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef182,451,995 - 82,581,819 (-)NCBIHuRef
CHM1_1184,449,793 - 84,579,544 (-)NCBICHM1_1
T2T-CHM13v2.0183,705,371 - 83,839,529 (-)NCBIT2T-CHM13v2.0
Ttll7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393146,557,312 - 146,690,156 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3146,558,122 - 146,689,764 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm383146,852,184 - 146,984,009 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3146,852,367 - 146,984,009 (+)Ensemblmm10GRCm38
MGSCv373146,515,331 - 146,645,714 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363146,789,753 - 146,899,154 (+)NCBIMGSCv36mm8
Celera3153,305,757 - 153,437,136 (+)NCBICelera
Cytogenetic Map3H2NCBI
cM Map372.28NCBI
Ttll7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554239,820,380 - 9,980,728 (+)Ensembl
ChiLan1.0NW_0049554239,819,049 - 9,956,744 (+)NCBIChiLan1.0ChiLan1.0
TTLL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21142,926,661 - 143,061,253 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11142,081,018 - 142,214,973 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01116,429,645 - 116,564,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1185,291,635 - 85,426,017 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl185,296,202 - 85,426,017 (-)EnsemblpanPan2panpan1.1
TTLL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1663,773,635 - 63,927,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl663,784,088 - 63,922,661 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha666,421,952 - 66,581,438 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0664,314,230 - 64,467,742 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl664,324,580 - 64,466,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1663,841,144 - 63,994,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0663,810,381 - 63,964,163 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0664,316,692 - 64,470,657 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ttll7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505894,625,926 - 94,771,133 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366081,534,836 - 1,680,532 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366081,534,847 - 1,675,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6129,708,374 - 129,867,887 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16129,708,353 - 129,868,498 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26119,950,518 - 120,061,786 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTLL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12049,350,271 - 49,479,519 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2049,350,924 - 49,479,154 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603368,280,410 - 68,409,515 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttll7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474213,508,064 - 13,602,643 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474213,426,552 - 13,606,398 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ttll7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1313,908,983 - 14,033,198 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ttll7
1700 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:120
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000055318, ENSRNOT00000075452
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
BF387913  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22235,834,375 - 235,834,595 (+)MAPPERmRatBN7.2
Rnor_6.02252,799,926 - 252,800,145NCBIRnor6.0
Rnor_5.02271,327,172 - 271,327,391UniSTSRnor5.0
RGSC_v3.42245,143,499 - 245,143,718UniSTSRGSC3.4
Celera2227,807,421 - 227,807,640UniSTS
Cytogenetic Map2q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000055318   ⟹   ENSRNOP00000052186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2238,431,058 - 238,545,299 (+)Ensembl
mRatBN7.2 Ensembl2235,765,835 - 235,885,047 (+)Ensembl
Rnor_6.0 Ensembl2252,771,017 - 252,850,495 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075452   ⟹   ENSRNOP00000067036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2238,426,076 - 238,545,960 (+)Ensembl
mRatBN7.2 Ensembl2235,765,835 - 235,885,047 (+)Ensembl
Rnor_6.0 Ensembl2252,771,017 - 252,850,495 (+)Ensembl
RefSeq Acc Id: XM_039103873   ⟹   XP_038959801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,425,786 - 238,549,296 (+)NCBI
mRatBN7.22235,765,788 - 235,889,047 (+)NCBI
RefSeq Acc Id: XM_039103874   ⟹   XP_038959802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,037 - 238,549,296 (+)NCBI
mRatBN7.22235,765,788 - 235,889,047 (+)NCBI
RefSeq Acc Id: XM_039103875   ⟹   XP_038959803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,047 - 238,549,296 (+)NCBI
mRatBN7.22235,765,788 - 235,889,047 (+)NCBI
RefSeq Acc Id: XM_039103876   ⟹   XP_038959804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,047 - 238,549,296 (+)NCBI
mRatBN7.22235,765,788 - 235,889,047 (+)NCBI
RefSeq Acc Id: XM_039103877   ⟹   XP_038959805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,035 - 238,549,296 (+)NCBI
mRatBN7.22235,765,788 - 235,889,047 (+)NCBI
RefSeq Acc Id: XM_039103880   ⟹   XP_038959808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,425,786 - 238,494,872 (+)NCBI
mRatBN7.22235,765,786 - 235,834,618 (+)NCBI
RefSeq Acc Id: XM_063282924   ⟹   XP_063138994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,047 - 238,549,296 (+)NCBI
RefSeq Acc Id: XM_063282925   ⟹   XP_063138995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,045 - 238,549,296 (+)NCBI
RefSeq Acc Id: XM_063282926   ⟹   XP_063138996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,037 - 238,549,296 (+)NCBI
RefSeq Acc Id: XM_063282927   ⟹   XP_063138997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,035 - 238,549,296 (+)NCBI
RefSeq Acc Id: XM_063282928   ⟹   XP_063138998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,044 - 238,494,872 (+)NCBI
RefSeq Acc Id: XM_063282929   ⟹   XP_063138999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,044 - 238,494,872 (+)NCBI
RefSeq Acc Id: XM_063282930   ⟹   XP_063139000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,035 - 238,494,872 (+)NCBI
RefSeq Acc Id: XM_063282931   ⟹   XP_063139001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,037 - 238,494,872 (+)NCBI
RefSeq Acc Id: XM_063282932   ⟹   XP_063139002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,426,035 - 238,494,872 (+)NCBI
RefSeq Acc Id: XM_063282933   ⟹   XP_063139003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,425,786 - 238,520,669 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001420090 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420091 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420092 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420093 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420094 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420095 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420096 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420097 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420098 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420099 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959801 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959802 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959803 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959804 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959808 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138994 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138995 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138996 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138997 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138998 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138999 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139000 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139001 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139002 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139003 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000052186
  ENSRNOP00000052186.6
  ENSRNOP00000067036
  ENSRNOP00000067036.4
Ensembl Acc Id: ENSRNOP00000052186   ⟸   ENSRNOT00000055318
Ensembl Acc Id: ENSRNOP00000067036   ⟸   ENSRNOT00000075452
RefSeq Acc Id: XP_038959808   ⟸   XM_039103880
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038959804   ⟸   XM_039103876
- Peptide Label: isoform X3
- UniProtKB: D4ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959803   ⟸   XM_039103875
- Peptide Label: isoform X3
- UniProtKB: D4ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959802   ⟸   XM_039103874
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959801   ⟸   XM_039103873
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959805   ⟸   XM_039103877
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139003   ⟸   XM_063282933
- Peptide Label: isoform X9
- UniProtKB: D4ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138997   ⟸   XM_063282927
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139000   ⟸   XM_063282930
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063139002   ⟸   XM_063282932
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063138996   ⟸   XM_063282926
- Peptide Label: isoform X4
- UniProtKB: D4ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139001   ⟸   XM_063282931
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063138998   ⟸   XM_063282928
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138999   ⟸   XM_063282929
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063138995   ⟸   XM_063282925
- Peptide Label: isoform X2
- UniProtKB: D4ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138994   ⟸   XM_063282924
- Peptide Label: isoform X1
- UniProtKB: D4ACG4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RBT9-F1-model_v2 AlphaFold M0RBT9 1-910 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566117 AgrOrtholog
BioCyc Gene G2FUF-50888 BioCyc
Ensembl Genes ENSRNOG00000031997 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055318 ENTREZGENE
  ENSRNOT00000055318.6 UniProtKB/TrEMBL
  ENSRNOT00000075452 ENTREZGENE
  ENSRNOT00000075452.5 UniProtKB/TrEMBL
Gene3D-CATH ATP-grasp fold, B domain UniProtKB/TrEMBL
InterPro TTL/TTLL_fam UniProtKB/TrEMBL
NCBI Gene 310982 ENTREZGENE
PANTHER TUBULIN POLYGLUTAMYLASE UniProtKB/TrEMBL
  TUBULIN POLYGLUTAMYLASE TTLL7 UniProtKB/TrEMBL
Pfam TTL UniProtKB/TrEMBL
PhenoGen Ttll7 PhenoGen
PROSITE TTL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031997 RatGTEx
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
UniProt A6HWF3 ENTREZGENE, UniProtKB/TrEMBL
  D4ACG4 ENTREZGENE, UniProtKB/TrEMBL
  M0RBT9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ttll7  tubulin tyrosine ligase like 7  LOC108350133  tubulin polyglutamylase TTLL7-like  Data merged from RGD:11458053 737654 PROVISIONAL
2016-08-02 LOC108350133  tubulin polyglutamylase TTLL7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-11-25 Ttll7  tubulin tyrosine ligase like 7  Ttll7  tubulin tyrosine ligase-like family, member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ttll7  tubulin tyrosine ligase-like family, member 7  RGD1566117_predicted  similar to hypothetical protein FLJ23033 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1566117_predicted  similar to hypothetical protein FLJ23033 (predicted)  LOC310982  similar to hypothetical protein FLJ23033  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC310982  similar to hypothetical protein FLJ23033      Symbol and Name status set to provisional 70820 PROVISIONAL