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Gene: Rbm44 (RNA binding motif protein 44) Rattus norvegicus

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Symbol:

Rbm44

Name:

RNA binding motif protein 44

RGD ID:

1566074

Description:

Predicted to enable mRNA 3'-UTR binding activity and protein homodimerization activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and intercellular bridge. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human RBM44 (RNA binding motif protein 44); INTERACTS WITH bisphenol A; 1,2-dichloroethane (ortholog); 4,4'-sulfonyldiphenol (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC501183; RGD1566074; RNA-binding motif protein 44; RNA-binding protein 44

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM44 (RNA binding motif protein 44)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rbm44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rbm44 (RNA binding motif protein 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TUB (TUB bipartite transcription factor)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Rbm44 (RNA binding motif protein 44)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBM44 (RNA binding motif protein 44)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-189g17.2	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm44	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,178,706 - 99,204,344 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	99,178,741 - 99,204,338 (+)	Ensembl				GRCr8
mRatBN7.2	9	91,731,153 - 91,756,783 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	91,731,115 - 91,756,772 (+)	Ensembl				mRatBN7.2
Rnor_6.0	9	98,279,031 - 98,305,248 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,279,022 - 98,304,859 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	97,961,069 - 97,986,891 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	90,372,335 - 90,393,175 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	89,273,820 - 89,299,842 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Dibutyl phosphate (ISO)

GSK-J4 (ISO)

mono(2-ethylhexyl) phthalate (ISO)

ozone (ISO)

serpentine asbestos (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA)

Cellular Component

catalytic step 2 spliceosome (IBA)

cytoplasm (IEA,ISO,ISS)

intercellular bridge (ISO,ISS)

Molecular Function

mRNA 3'-UTR binding (IBA)

nucleic acid binding (IEA)

protein binding (ISO)

protein homodimerization activity (ISO,ISS)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15057822	PMID:21364893

Genomics

Comparative Map Data

Rbm44
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,178,706 - 99,204,344 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	99,178,741 - 99,204,338 (+)	Ensembl				GRCr8
mRatBN7.2	9	91,731,153 - 91,756,783 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	91,731,115 - 91,756,772 (+)	Ensembl				mRatBN7.2
Rnor_6.0	9	98,279,031 - 98,305,248 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,279,022 - 98,304,859 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	97,961,069 - 97,986,891 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	90,372,335 - 90,393,175 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	89,273,820 - 89,299,842 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

RBM44
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	237,798,779 - 237,842,805 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	237,798,389 - 237,842,808 (+)	Ensembl			hg38	GRCh38
GRCh37	2	238,707,422 - 238,751,448 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	238,372,127 - 238,408,253 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	232,420,425 - 232,464,485 (+)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	230,499,343 - 230,543,403 (+)	NCBI		HuRef
CHM1_1	2	238,713,179 - 238,757,242 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	238,288,049 - 238,332,805 (+)	NCBI		T2T-CHM13v2.0

Rbm44
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	91,072,695 - 91,098,521 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	91,072,811 - 91,098,517 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	91,144,973 - 91,170,799 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	91,145,089 - 91,170,795 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	93,041,680 - 93,067,372 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	92,975,509 - 93,001,201 (+)	NCBI		MGSCv36	mm8
Celera	1	94,088,163 - 94,108,775 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	46.08	NCBI

Rbm44
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955542	2,571,203 - 2,620,313 (-)	Ensembl
ChiLan1.0	NW_004955542	2,573,648 - 2,620,240 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBM44
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	140,431,580 - 140,475,590 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	140,446,547 - 140,490,557 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	125,032,071 - 125,075,989 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	243,882,989 - 243,926,875 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

RBM44
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	48,378,913 - 48,420,011 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	48,378,970 - 48,410,104 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	48,875,810 - 48,916,873 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	48,764,889 - 48,805,968 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	48,764,931 - 48,805,602 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	48,640,712 - 48,681,541 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	48,428,987 - 48,470,051 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	48,661,612 - 48,702,183 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rbm44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	190,354,555 - 190,391,783 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	556,513 - 569,589 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	556,497 - 585,503 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM44
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	137,444,855 - 137,481,025 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	137,444,905 - 137,482,073 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	151,852,988 - 151,890,497 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM44
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	123,816,053 - 123,861,117 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	123,831,247 - 123,852,787 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	75,551,952 - 75,574,644 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm44
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	3,105,564 - 3,158,902 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624847	3,105,568 - 3,158,511 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rbm44
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	163,143,622 - 163,165,175 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rbm44
93 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	69
Count of miRNA genes:	65
Interacting mature miRNAs:	66
Transcripts:	ENSRNOT00000038536
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	86720043	110356905	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	85262459	109044727	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	9	60	137	53	58	31	71	31	6	216	151	10	124	18	82	27	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001419673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001066845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038536 ⟹ ENSRNOP00000034920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	99,178,741 - 99,204,338 (+)	Ensembl
mRatBN7.2 Ensembl	9	91,731,115 - 91,756,772 (+)	Ensembl
Rnor_6.0 Ensembl	9	98,279,022 - 98,304,859 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165710 ⟹ ENSRNOP00000105190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	99,178,741 - 99,204,338 (+)	Ensembl

RefSeq Acc Id:

NM_001419673 ⟹ NP_001406602

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,178,741 - 99,204,338 (+)	NCBI
mRatBN7.2	9	91,731,186 - 91,756,783 (+)	NCBI

RefSeq Acc Id:

XM_008767346 ⟹ XP_008765568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	99,178,706 - 99,204,344 (+)	NCBI
mRatBN7.2	9	91,731,153 - 91,756,783 (+)	NCBI
Rnor_6.0	9	98,279,031 - 98,305,248 (+)	NCBI

Sequence:

show sequence

GCAGCCGTTACCCGACAAGCCCCGGGACACCACTCGTTGGAAAGCAGAGGAGGCAGCGAGAGCA
ACCTGGAGGAGTGGTTCGACGGCAGGGACACAGGCGACAGGCGATGCTTATGAACGTACATCTT
TGAACTATGCAGGCCACTGCAGTGGTAGAAACAGATTCTGATAAAAGCTACCACAAAAATGGAG
GACACCTCCAAAACGATAAACTTTATTATCCTAAGAAAGAAAATATGTTATTTTCCAATGGTTG
CAACAGAGTCAAATTGACCTTTCCTGATGGTGAAGGGGACTCCTTGACAACAGATGAAAGGACT
AATGTCAAAGAGAACAGCAGTGTTGACAAGAGAGATTTGTCAGAACTGTCATTTTCAGAAACTC
AAGATACTAACGTAGAGAATCTTTTCTCCCAGTCAAGTGAATTTGAGGACAATATTGAGTATGC
TTTTTTGAATGAGACCTATTCTATCCATTATTCAGAATCAAAACTCAAGGATGAAAATATTTTG
CATTTATATTCAGAATTAGATCCTGAAGTACACGAAAGAGTGGAGGTGTTTTTTGACACTTTTG
GACCTCAAGGTAATAATGACATCGGATTGGGAAGGAGCTGTGAGGCGCTGGGCTCTGCCTGTGG
AGACATGCAGAAGAGCGATGTGCGTGAAGACTCGCAGCAGGAGTACCACAGCGCAGAGCTGGAG
TGCCTGAGCGCACATTTAGCGGTTGACCCAGCGAAGACAGTGAGCAGGTCTAGTCTGGATGTTA
GTGAGTGGAGAACATCAAGCTATACCTTTAAATGTGGCGGCAATTTAGAAGTTAATCGTGGTAA
ATTAGAGAGTGGTCCTATCCCCTTTTTGGAGTCACTTAATGGTTTTTCACCAAAATGTTCGCCT
CAAGTCTCTACATCTCCGAGTTCTGATATGTTAAAAGAATATCATGAGCCAAAATATGAAAAAT
ATAAGGAGCAAGAAGTTGGTTTAACATATCACAAAACATTTGATGACATTTTACAGAGAAGCAG
TTCTCCTTTAAACTCTCAGAAAGTACCTGAACCTCTAGTTTATGCCAAAGAAATGAAGTCTCAG
ACGATTGAAGGTAAAGACTTCTATGGAGATAGAATTTTCCAGAACAGAGCATTACAGCACCCTG
AGAATGCTATGTTTCCCCAGGACCACGCCCTTGAGACACCCCTGAAGGCTCTCGATGCTCACCA
GCTTTCTGGGCCGTATGTTCTCGATGACTCAGTCATTTCCCTCTGTGGCTCTTTGCAGTACAAT
AGCCTCCCGGAGCCAGGCTTTTACTCGCCTGTGATGCCACGGGTGGCAGTCACAGATAGTCAGG
CAGAAGTAGCGGGCAGCTGCCTACACCATGTACAAGGCAGTGCCACAAATAAAACATGCTCTCT
TATGAAAGAAATGTGCCTTAAGTCAGGGCCAGATGCAGCAAACTGTGTAGCTTTAGGTCAGCAG
ACACTGGATGTGAGCGGCAGAGCAAATGTAAGCTCTTCTGTAGTGTCTACAGCAAGCACCACAG
AGACAAAGACAGTGAGACGGAGTCAGCCTGAGGAGTGGCAACGTGACAGACAAAGCGTGGCCTG
TAACACTGACTGGTCATGTGGGCAGCAGTGCAGAAGTGCCCGGGCGGCTGCCCTGGGAAGTGAC
TCAGGAAGGCCACTCTCAACTGACTGTTTAAACTGTGGAAACTCCATGGATGAGAATTCCTTGG
AATTAAGAAAAACACCAGACAAACAGAGACATCCAGAGAGGGCATTTCAGCTCTGTGAAGAGAT
GGCTTTGCCATCAAAGTGCTGTGAGAAGACCACAGAGAGGGCCGTGAAGGCGGAGACGCACCTT
CTGGATGTTTGCTACCAGATGTGCCACCACCACTGTCACCACATTTACAAACTCGTAATGGGGA
GCAGAGCGGGGCTCAGTAGGAATTTACCAACTGATTCTGCTCAGAAGGAATTAGGGACAGCACT
GCTGTCTGTTCTGGAAGACTTGAAAGCTAGGTACATGAACTTGAAAGGAAAAGTCCACAAGGGC
ATACCCCTGGAAGAGCTGCCCCCACTGTCTGTGGAGTCCAAGCTGTTGTCTGCCTTCTCCGACT
TTGCTTCCAGGCTAATGAAAGAAGAAGCATGCAGCCTTTCAGGAGCAAATTCTGAGCTGGATAA
TCAAAGCTTACCTGAAGTTGCTATTTCTCCAAGCCTGTTAAAGACTTTGTCCCAGATGTCTTCT
ATATCTGACAGTAGTCATCCTAAGCAAGATAAATTACCCATGAACAATATTTTTAAAAATTGTG
ATATAAACATAGATTTTAATCACCTGAAGCTCAATGACAAAGAGTCTAAAAATGTCCATGAAGC
AAGTGAAGACTGGTTTGATGCGACAGAGAGGCTGACTGGAACTGACTTCTCAGTAACTCAAGAA
AACATAACAGAATCTGAGGACTGGGATCCAAAGAATCCATTAGAATTGAAGACTATTGAACGGC
TTCGAAGAGGTAAAGGCTTTTTGATACATGTTGGTGGTCTTTGCCCTTCTGTATCTGAGGCTGA
TTTAAGGTCTCATTTCCAGAAATACCAAGTTTCTGAAATTTCGATTTATGATTCTAATACTAAT
TACAGATATGCATCTCTTGCCTGTGCAAAAAACAGTAATGCAAAGATGGCCGTGAAGGAGATGA
ATGGAGTGGAAATCAATGGGAAATCCGTGAACGTGCGGCTTGTGAAAATCCCGGGAGAATACAT
ACCACCGCTTTTGTCCACAGCCGGAAACAACATTAGTATGAATCACTTGGAGAGAAATAGCAGC
AAAGATGCCACCTCTGCCGCTTCCACTTGTCGGCTGCCCATAGCTAGATCAGGGCAGCTGGAGT
CTGAGCAAGACAGTGAGTTTCTTCCCTTGGTCCAGGGTGTCAGGGAAAATTGTAACCAGGTCAA
ATCTGGTCAGTCATTACCTGAGACACCTTTTCAGTTCATACCTCCACATACATTGAACCTTCGT
AGCTTCACCAAGATCATGAAGAGGTTGGCTGAACTGCACCCAGAGATCAGCAGAGACCACATTA
TAGAGGCCCTTCAGGAAGTGAGGATAAATCACAAAGGTTTTCTGAATGGTTTGTCCATCAATAC
CATTGTAAAAATGACTTCATCTTTTCTGAGAAACGCTGCTTCCCGTTTGAAATAAGTGAAGCAG
TACAGAGAAAATCTTTGGAAAGTAGCAGTGCCCTTCATCAGAGAAACTTCTGCAGCAATTAGGA
AAAGGCCGTGGTAATACAGACAGACAGCGTATTCTATTTGATCGTCCTCCTTTCAAACCTGACG
ACAACAGATAACTATGTAGTATTAAAGTCTGCATGTATGCTTTATTATGTTTATAAACTTTATT
TCAAAATTATTACTCAAGACTCAAGCTGTGTATTTTGAACCAGAAAAAAATGTGGTCATGTCCA
TTTATAAATTATCATTAATAAGTCCGTTTAAAAGATACTGCCTAGAAAAAGTTTATTTCTACTG
TTTCAAAGTTCATTACACATGTAAAAATTATGTGAACTTTTTACACAATTCATATGTGAAAATA
GAATTTCTATAGAGCTTCCATTTGTACTTTAAGCTTTTCAGATTCAGATTGGAGCACAGGGTTC
AGTGCACACAGAGCAGAGCTGAGCCTCCTGTGATGTTAGTGGTGTCTGACAGCAGTAAGGTGTG
CAGCTCTGTCTTCCCAGGTGCGCTCTGGCAAGGAACTGAACCGTAAGTGGTCACCATGTTCTGG
CCTGAGTCTAACTACGTTCTGCTGTGCTAGAGTATAAATTGAATATGCTGCTCTGTCTCCAGCA
ATATAGAATGTGAGGGCATCACCCTGTTCCCTTTGCAGTAGTAACTAACACACTGGCCAAAGTG
CATTTGTACGATAATAGCCTTAACATTCCGTACTCTGCAGATGTTAAATTGTTTCCAGTGCTCC
ATAGGTGCTGCTTGATGAAAACTTACCTATTACACATTTGTATTTGATGACCTGTGTGTTTAAT
AAAGGTGGTTAGCTCCTCTCTGACTCCAGTGCTCTCTGTAAGTGGGCGTCCCAGGTTAAGCCAC
CTACTAGTCTATATGTATATTAAAATGATAACTGCTGGCTAACTGCCAAGAGCTAGATTCCTCA
GTGTGTGTATACCTAAACTCAAAAGTAATTGGTTTGGTCTATATATCAAATTAGTAAAATTATA
AAATCCTGGGGGTTTTCCTACATATAAAATCATTTAACATTTCATTGAAAGGCTACATTGACAA
TTGGCCCTGAATAGCCTTGTGATACAAACTAGACATTATCTTTAATATGTTTGGAGAAATTTGC
AAACCTGTAATCATTAGTTTCTCAATAACCAAATGTCTGACATAGTATATATGCCTTTTCATAT
AGACAAAATTACTGAATTTCATTTGGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001406602	(Get FASTA)	NCBI Sequence Viewer
	XP_008765568	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3Z987	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034920

RefSeq Acc Id:	XP_008765568 ⟸ XM_008767346
- Peptide Label:	isoform X1
- UniProtKB:	D3Z987 (UniProtKB/Swiss-Prot), R9PXX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQATAVVETDSDKSYHKNGGHLQNDKLYYPKKENMLFSNGCNRVKLTFPDGEGDSLTTDERTNV KENSSVDKRDLSELSFSETQDTNVENLFSQSSEFEDNIEYAFLNETYSIHYSESKLKDENILHL YSELDPEVHERVEVFFDTFGPQGNNDIGLGRSCEALGSACGDMQKSDVREDSQQEYHSAELECL SAHLAVDPAKTVSRSSLDVSEWRTSSYTFKCGGNLEVNRGKLESGPIPFLESLNGFSPKCSPQV STSPSSDMLKEYHEPKYEKYKEQEVGLTYHKTFDDILQRSSSPLNSQKVPEPLVYAKEMKSQTI EGKDFYGDRIFQNRALQHPENAMFPQDHALETPLKALDAHQLSGPYVLDDSVISLCGSLQYNSL PEPGFYSPVMPRVAVTDSQAEVAGSCLHHVQGSATNKTCSLMKEMCLKSGPDAANCVALGQQTL DVSGRANVSSSVVSTASTTETKTVRRSQPEEWQRDRQSVACNTDWSCGQQCRSARAAALGSDSG RPLSTDCLNCGNSMDENSLELRKTPDKQRHPERAFQLCEEMALPSKCCEKTTERAVKAETHLLD VCYQMCHHHCHHIYKLVMGSRAGLSRNLPTDSAQKELGTALLSVLEDLKARYMNLKGKVHKGIP LEELPPLSVESKLLSAFSDFASRLMKEEACSLSGANSELDNQSLPEVAISPSLLKTLSQMSSIS DSSHPKQDKLPMNNIFKNCDINIDFNHLKLNDKESKNVHEASEDWFDATERLTGTDFSVTQENI TESEDWDPKNPLELKTIERLRRGKGFLIHVGGLCPSVSEADLRSHFQKYQVSEISIYDSNTNYR YASLACAKNSNAKMAVKEMNGVEINGKSVNVRLVKIPGEYIPPLLSTAGNNISMNHLERNSSKD ATSAASTCRLPIARSGQLESEQDSEFLPLVQGVRENCNQVKSGQSLPETPFQFIPPHTLNLRSF TKIMKRLAELHPEISRDHIIEALQEVRINHKGFLNGLSINTIVKMTSSFLRNAASRLK hide sequence

Ensembl Acc Id:

ENSRNOP00000034920 ⟸ ENSRNOT00000038536

RefSeq Acc Id:	NP_001406602 ⟸ NM_001419673
- UniProtKB:	D3Z987 (UniProtKB/Swiss-Prot), R9PXX2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105190 ⟸ ENSRNOT00000165710

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z987-F1-model_v2	AlphaFold	D3Z987	1-1020	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696857

Promoter ID:

EPDNEW_R7379

Type:

multiple initiation site

Name:

Rbm44_1

Description:

RNA binding motif protein 44

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	98,279,062 - 98,279,122	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566074	AgrOrtholog
BioCyc Gene	G2FUF-26729	BioCyc
Ensembl Genes	ENSRNOG00000024878	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000038536	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	TTC3/DZIP3/RBM44-like_helical	UniProtKB/Swiss-Prot
NCBI Gene	501183	ENTREZGENE
PANTHER	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	UniProtKB/Swiss-Prot
	RNA-BINDING PROTEIN 44	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
	TTC3_9th	UniProtKB/Swiss-Prot
PhenoGen	Rbm44	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000024878	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0ABK0LQ69_RAT	UniProtKB/TrEMBL
	D3Z987	ENTREZGENE
	R9PXX2	ENTREZGENE, UniProtKB/TrEMBL
	RBM44_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Rbm44	RNA binding motif protein 44	RGD1566074_predicted	RGD1566074 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1566074_predicted	RGD1566074 (predicted)	LOC501183	LOC501183	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501183	LOC501183			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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