Rnf208 (ring finger protein 208) - Rat Genome Database

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Gene: Rnf208 (ring finger protein 208) Rattus norvegicus
Analyze
Symbol: Rnf208
Name: ring finger protein 208
RGD ID: 1565957
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein autoubiquitination. Orthologous to human RNF208 (ring finger protein 208); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC499748; RGD1565957; similar to RIKEN cDNA 1110061N23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,455,836 - 28,457,879 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,395,769 - 28,458,093 (+)EnsemblGRCr8
mRatBN7.238,057,808 - 8,059,721 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,043,685 - 8,059,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx311,163,109 - 11,164,433 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,749,339 - 19,750,663 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,939,182 - 17,940,506 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,462,466 - 2,463,790 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,462,466 - 2,463,790 (+)Ensemblrn6Rnor6.0
Rnor_5.032,443,879 - 2,445,203 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.433,408,497 - 3,409,821 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,884,946 - 2,886,270 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24105792  


Genomics

Comparative Map Data
Rnf208
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,455,836 - 28,457,879 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,395,769 - 28,458,093 (+)EnsemblGRCr8
mRatBN7.238,057,808 - 8,059,721 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,043,685 - 8,059,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx311,163,109 - 11,164,433 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,749,339 - 19,750,663 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,939,182 - 17,940,506 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,462,466 - 2,463,790 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,462,466 - 2,463,790 (+)Ensemblrn6Rnor6.0
Rnor_5.032,443,879 - 2,445,203 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.433,408,497 - 3,409,821 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,884,946 - 2,886,270 (+)NCBICelera
Cytogenetic Map3p13NCBI
RNF208
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,220,259 - 137,223,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,220,246 - 137,222,290 (-)Ensemblhg38GRCh38
GRCh379140,114,711 - 140,117,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,234,528 - 139,235,596 (-)NCBIBuild 36Build 36hg18NCBI36
Cytogenetic Map9q34.3NCBI
HuRef9109,574,412 - 109,575,488 (-)NCBIHuRef
CHM1_19140,263,431 - 140,264,507 (-)NCBICHM1_1
T2T-CHM13v2.09149,457,928 - 149,461,077 (-)NCBIT2T-CHM13v2.0
Rnf208
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,132,941 - 25,134,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,132,941 - 25,134,274 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38225,242,929 - 25,244,261 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,242,929 - 25,244,262 (+)Ensemblmm10GRCm38
MGSCv37225,098,449 - 25,099,781 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36225,064,947 - 25,066,271 (+)NCBIMGSCv36mm8
Celera224,970,856 - 24,972,188 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.1NCBI
Rnf208
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,219,425 - 5,220,228 (-)Ensembl
ChiLan1.0NW_0049555135,219,250 - 5,223,043 (-)NCBIChiLan1.0ChiLan1.0
RNF208
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,176,273 - 2,179,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,179,330 - 2,181,768 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,279,801 - 108,281,695 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,248,585 - 137,249,788 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,248,765 - 137,249,550 (-)EnsemblpanPan2panpan1.1
RNF208
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,452,147 - 48,453,585 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,452,622 - 48,453,416 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha947,637,974 - 47,639,807 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0949,312,827 - 49,314,660 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,313,696 - 49,314,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,089,229 - 48,091,062 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,388,040 - 48,389,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,435,199 - 48,437,032 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf208
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,604,290 - 202,605,974 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936669769,076 - 770,772 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF208
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,151,765 - 314,153,643 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF208
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112964,434 - 968,163 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12968,438 - 969,223 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
ChlSab1.1 Ensembl12968,438 - 969,223 (+)NCBIChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660584,336,538 - 4,339,864 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf208
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760734,629 - 735,435 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624760733,711 - 735,605 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf208
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1511,937,905 - 11,939,930 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf208
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:43
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000014087
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 64 161 88 87 56 87 56 6 343 183 10 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014087   ⟹   ENSRNOP00000014087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,456,555 - 28,457,879 (+)Ensembl
mRatBN7.2 Ensembl38,058,397 - 8,059,721 (+)Ensembl
Rnor_6.0 Ensembl32,462,466 - 2,463,790 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106003   ⟹   ENSRNOP00000093881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,043,963 - 8,059,844 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108034   ⟹   ENSRNOP00000090406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,456,157 - 28,458,093 (+)Ensembl
mRatBN7.2 Ensembl38,058,013 - 8,059,844 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111128   ⟹   ENSRNOP00000096761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,043,685 - 8,059,844 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116000   ⟹   ENSRNOP00000091105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,442,451 - 28,457,936 (+)Ensembl
mRatBN7.2 Ensembl38,044,178 - 8,059,844 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117799   ⟹   ENSRNOP00000076497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,441,687 - 28,458,093 (+)Ensembl
mRatBN7.2 Ensembl38,043,963 - 8,059,721 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000121810   ⟹   ENSRNOP00000109947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,442,045 - 28,458,093 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000126977   ⟹   ENSRNOP00000103662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,442,169 - 28,458,065 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129110   ⟹   ENSRNOP00000108198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,395,769 - 28,458,093 (+)Ensembl
RefSeq Acc Id: NM_001109195   ⟹   NP_001102665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,456,555 - 28,457,879 (+)NCBI
mRatBN7.238,058,397 - 8,059,721 (+)NCBI
Rnor_6.032,462,466 - 2,463,790 (+)NCBI
Rnor_5.032,443,879 - 2,445,203 (+)NCBI
RGSC_v3.433,408,497 - 3,409,821 (+)RGD
Celera32,884,946 - 2,886,270 (+)RGD
Sequence:
RefSeq Acc Id: XM_039105655   ⟹   XP_038961583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,455,836 - 28,457,878 (+)NCBI
mRatBN7.238,057,808 - 8,059,720 (+)NCBI
RefSeq Acc Id: NP_001102665   ⟸   NM_001109195
- Sequence:
Ensembl Acc Id: ENSRNOP00000014087   ⟸   ENSRNOT00000014087
RefSeq Acc Id: XP_038961583   ⟸   XM_039105655
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000090406   ⟸   ENSRNOT00000108034
Ensembl Acc Id: ENSRNOP00000076497   ⟸   ENSRNOT00000117799
Ensembl Acc Id: ENSRNOP00000096761   ⟸   ENSRNOT00000111128
Ensembl Acc Id: ENSRNOP00000093881   ⟸   ENSRNOT00000106003
Ensembl Acc Id: ENSRNOP00000091105   ⟸   ENSRNOT00000116000
Ensembl Acc Id: ENSRNOP00000103662   ⟸   ENSRNOT00000126977
Ensembl Acc Id: ENSRNOP00000108198   ⟸   ENSRNOT00000129110
Ensembl Acc Id: ENSRNOP00000109947   ⟸   ENSRNOT00000121810
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADR3-F1-model_v2 AlphaFold D4ADR3 1-265 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565957 AgrOrtholog
BioCyc Gene G2FUF-50470 BioCyc
Ensembl Genes ENSRNOG00000010607 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000072192 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014087.6 UniProtKB/TrEMBL
  ENSRNOT00000106003.2 UniProtKB/TrEMBL
  ENSRNOT00000108034 ENTREZGENE
  ENSRNOT00000108034.2 UniProtKB/TrEMBL
  ENSRNOT00000111128.2 UniProtKB/TrEMBL
  ENSRNOT00000116000.2 UniProtKB/TrEMBL
  ENSRNOT00000117799.2 UniProtKB/TrEMBL
  ENSRNOT00000121810.1 UniProtKB/TrEMBL
  ENSRNOT00000126977.1 UniProtKB/TrEMBL
  ENSRNOT00000129110.1 UniProtKB/TrEMBL
  ENSRNOT00000135989.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RING_finger_E3_ubiq-ligases UniProtKB/TrEMBL
  RNF208_RING-HC UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:499748 UniProtKB/TrEMBL
NCBI Gene 499748 ENTREZGENE
PANTHER PTHR22791:SF3 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
PhenoGen Rnf208 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010607 RatGTEx
  ENSRNOG00000072192 RatGTEx
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I6AVJ8_RAT UniProtKB/TrEMBL
  A6JT22 ENTREZGENE, UniProtKB/TrEMBL
  D4ADR3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Rnf208  ring finger protein 208  RGD1565957_predicted  similar to RIKEN cDNA 1110061N23 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565957_predicted  similar to RIKEN cDNA 1110061N23 (predicted)  LOC499748  similar to RIKEN cDNA 1110061N23  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499748  similar to RIKEN cDNA 1110061N23      Symbol and Name status set to provisional 70820 PROVISIONAL