Slc25a13 (solute carrier family 25 member 13) - Rat Genome Database

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Gene: Slc25a13 (solute carrier family 25 member 13) Rattus norvegicus
Analyze
Symbol: Slc25a13
Name: solute carrier family 25 member 13
RGD ID: 1565889
Description: Predicted to enable amino acid:monoatomic cation antiporter activity; calcium ion binding activity; and identical protein binding activity. Predicted to be involved in several processes, including dicarboxylic acid transport; gluconeogenesis; and purine nucleotide metabolic process. Predicted to be located in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in adult-onset type II citrullinemia and neonatal-onset type II citrullinemia. Orthologous to human SLC25A13 (solute carrier family 25 member 13); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium-binding mitochondrial carrier protein Aralar2; electrogenic aspartate/glutamate antiporter SLC25A13, mitochondrial; LOC362322; RGD1565889; similar to citrin; solute carrier family 25 (aspartate/glutamate carrier), member 13; solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13; solute carrier family 25, member 13; solute carrier family 25, member 13 (citrin)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8435,145,721 - 35,328,403 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl435,145,721 - 35,328,360 (-)EnsemblGRCr8
mRatBN7.2434,179,224 - 34,361,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl434,179,224 - 34,361,902 (-)EnsemblmRatBN7.2
Rnor_6.0431,134,165 - 31,757,006 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)Ensemblrn6Rnor6.0
Rnor_5.0431,041,075 - 31,053,633 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0431,476,115 - 31,624,950 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4430,822,456 - 31,006,241 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera429,703,579 - 29,885,288 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
hydralazine  (ISO)
hydrazine  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
metacetamol  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
nitrofen  (EXP)
omeprazole  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
tolcapone  (EXP)
topotecan  (EXP)
torcetrapib  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrial inner membrane  (IEA,ISO,ISS)
mitochondrion  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The gene mutated in adult-onset type II citrullinaemia encodes a putative mitochondrial carrier protein. Kobayashi K, etal., Nat Genet. 1999 Jun;22(2):159-63.
3. Neuronal and astrocytic shuttle mechanisms for cytosolic-mitochondrial transfer of reducing equivalents: current evidence and pharmacological tools. McKenna MC, etal., Biochem Pharmacol. 2006 Feb 14;71(4):399-407. Epub 2005 Dec 20.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Identification of two novel mutations in the SLC25A13 gene and detection of seven mutations in 102 patients with adult-onset type II citrullinemia. Yasuda T, etal., Hum Genet. 2000 Dec;107(6):537-45.
Additional References at PubMed
PMID:10642534   PMID:11566871   PMID:12851387   PMID:12865426   PMID:14651853   PMID:14701727   PMID:17213189   PMID:18614015   PMID:25410934  


Genomics

Comparative Map Data
Slc25a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8435,145,721 - 35,328,403 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl435,145,721 - 35,328,360 (-)EnsemblGRCr8
mRatBN7.2434,179,224 - 34,361,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl434,179,224 - 34,361,902 (-)EnsemblmRatBN7.2
Rnor_6.0431,134,165 - 31,757,006 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)Ensemblrn6Rnor6.0
Rnor_5.0431,041,075 - 31,053,633 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0431,476,115 - 31,624,950 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4430,822,456 - 31,006,241 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera429,703,579 - 29,885,288 (-)NCBICelera
Cytogenetic Map4q21NCBI
SLC25A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38796,120,220 - 96,322,098 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl796,120,218 - 96,322,147 (-)Ensemblhg38GRCh38
GRCh37795,749,532 - 95,951,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36795,587,468 - 95,789,341 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34795,394,183 - 95,596,056NCBI
Celera790,449,390 - 90,651,529 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef790,357,333 - 90,559,663 (-)NCBIHuRef
CHM1_1795,679,529 - 95,881,481 (-)NCBICHM1_1
T2T-CHM13v2.0797,356,097 - 97,557,993 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2795,078,578 - 95,280,528 (-)NCBI
Slc25a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3966,041,218 - 6,217,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl66,041,218 - 6,217,173 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3866,041,218 - 6,217,304 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl66,041,218 - 6,217,173 (-)Ensemblmm10GRCm38
MGSCv3765,991,218 - 6,167,173 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3665,991,218 - 6,167,118 (-)NCBIMGSCv36mm8
Celera66,191,941 - 6,368,691 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map62.3NCBI
Slc25a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543212,684,596 - 12,826,667 (-)Ensembl
ChiLan1.0NW_00495543212,685,253 - 12,788,307 (-)NCBIChiLan1.0ChiLan1.0
SLC25A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26113,956,843 - 114,158,292 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17162,221,482 - 162,422,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0788,072,139 - 88,273,470 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17101,658,507 - 101,859,587 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7101,658,507 - 101,859,587 (-)EnsemblpanPan2panpan1.1
SLC25A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11421,295,651 - 21,481,767 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1421,296,512 - 21,482,236 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1420,854,349 - 21,039,621 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01421,117,304 - 21,303,024 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1421,117,307 - 21,303,055 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11421,263,543 - 21,449,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,997,051 - 21,182,116 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01421,255,033 - 21,440,576 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc25a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511834,647,374 - 34,802,646 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365854,058,877 - 4,215,942 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365854,061,297 - 4,215,912 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl975,781,361 - 75,980,518 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1975,781,421 - 75,980,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2983,193,939 - 83,393,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12152,728,251 - 52,929,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2152,729,558 - 52,930,021 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604251,423,801 - 51,634,189 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248132,852,585 - 2,998,651 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248132,851,620 - 3,019,593 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc25a13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16132,418,148 - 132,599,011 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc25a13
1020 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000013817
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43353881653719714Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH130927  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8435,146,664 - 35,147,068 (+)Marker Load Pipeline
mRatBN7.2434,180,167 - 34,180,571 (+)MAPPERmRatBN7.2
Rnor_6.0431,135,109 - 31,135,512NCBIRnor6.0
Rnor_5.0431,042,019 - 31,042,422UniSTSRnor5.0
RGSC_v3.4430,823,640 - 30,824,043UniSTSRGSC3.4
Celera429,704,523 - 29,704,926UniSTS
Cytogenetic Map4q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013817   ⟹   ENSRNOP00000013816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl435,179,896 - 35,290,833 (-)Ensembl
mRatBN7.2 Ensembl434,213,409 - 34,324,349 (-)Ensembl
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115980   ⟹   ENSRNOP00000076742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl435,145,721 - 35,328,360 (-)Ensembl
mRatBN7.2 Ensembl434,179,224 - 34,361,902 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119208   ⟹   ENSRNOP00000089641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl435,145,721 - 35,222,159 (-)Ensembl
mRatBN7.2 Ensembl434,179,224 - 34,255,674 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146991   ⟹   ENSRNOP00000107914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl435,145,721 - 35,269,322 (-)Ensembl
RefSeq Acc Id: NM_001419624   ⟹   NP_001406553
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,328,360 (-)NCBI
mRatBN7.2434,179,224 - 34,361,877 (-)NCBI
RefSeq Acc Id: NM_001419627   ⟹   NP_001406556
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,328,360 (-)NCBI
mRatBN7.2434,179,224 - 34,361,877 (-)NCBI
RefSeq Acc Id: XM_039108599   ⟹   XP_038964527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,222,425 (-)NCBI
mRatBN7.2434,179,224 - 34,255,939 (-)NCBI
RefSeq Acc Id: XM_039108600   ⟹   XP_038964528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,222,424 (-)NCBI
mRatBN7.2434,179,224 - 34,255,939 (-)NCBI
RefSeq Acc Id: XR_005503442
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,202,694 - 35,328,403 (-)NCBI
mRatBN7.2434,180,845 - 34,361,912 (-)NCBI
RefSeq Acc Id: XR_005503443
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,202,694 - 35,328,403 (-)NCBI
mRatBN7.2434,180,845 - 34,361,912 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001406553 (Get FASTA)   NCBI Sequence Viewer  
  NP_001406556 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964527 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964528 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15030 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076742
  ENSRNOP00000089641
  ENSRNOP00000107914
GenBank Protein F1LZW6 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000013816   ⟸   ENSRNOT00000013817
RefSeq Acc Id: XP_038964527   ⟸   XM_039108599
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A972 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964528   ⟸   XM_039108600
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A972 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089641   ⟸   ENSRNOT00000119208
Ensembl Acc Id: ENSRNOP00000076742   ⟸   ENSRNOT00000115980
RefSeq Acc Id: NP_001406556   ⟸   NM_001419627
- Peptide Label: isoform 2
- UniProtKB: A6IDU3 (UniProtKB/TrEMBL),   A0A8I5ZK53 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406553   ⟸   NM_001419624
- Peptide Label: isoform 1
- UniProtKB: F1LZW6 (UniProtKB/Swiss-Prot),   A6IDU3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107914   ⟸   ENSRNOT00000146991
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LZW6-F1-model_v2 AlphaFold F1LZW6 1-484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565889 AgrOrtholog
BioCyc Gene G2FUF-45701 BioCyc
Ensembl Genes ENSRNOG00000009957 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000013817 ENTREZGENE
  ENSRNOT00000115980 ENTREZGENE
  ENSRNOT00000119208 ENTREZGENE
  ENSRNOT00000146991 ENTREZGENE
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  Mit_carrier UniProtKB/Swiss-Prot
  Mito_Solute_Carrier UniProtKB/Swiss-Prot
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 362322 ENTREZGENE
PANTHER MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED UniProtKB/Swiss-Prot
  PTHR45678:SF12 UniProtKB/Swiss-Prot
Pfam Mito_carr UniProtKB/Swiss-Prot
PhenoGen Slc25a13 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot
  SOLCAR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009957 RatGTEx
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot
  SSF47473 UniProtKB/Swiss-Prot
UniProt A0A8I5ZK53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A972 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W1AM87_RAT UniProtKB/TrEMBL
  A0ABK0LB96_RAT UniProtKB/TrEMBL
  A6IDU3 ENTREZGENE, UniProtKB/TrEMBL
  F1LZW6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc25a13  solute carrier family 25 member 13  Slc25a13  solute carrier family 25 (aspartate/glutamate carrier), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc25a13  solute carrier family 25 (aspartate/glutamate carrier), member 13  Slc25a13  solute carrier family 25, member 13 (citrin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc25a13  solute carrier family 25, member 13 (citrin)  Slc25a13  solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Slc25a13  solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13  RGD1565889_predicted  similar to citrin (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565889_predicted  similar to citrin (predicted)  LOC362322  similar to citrin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362322  similar to citrin      Symbol and Name status set to provisional 70820 PROVISIONAL