Gene: Fam222a (family with sequence similarity 222, member A) Rattus norvegicus
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Symbol:
Fam222a
Name:
family with sequence similarity 222, member A
RGD ID:
1565883
Description:
Orthologous to human FAM222A (family with sequence similarity 222 member A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bis(2-ethylhexyl) phthalate.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
hypothetical protein LOC498193; LOC498193; RGD1565883; similar to hypothetical protein FLJ14721; uncharacterized protein LOC498193
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
FAM222A (family with sequence similarity 222 member A)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Fam222a (family with sequence similarity 222, member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Fam222a (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
FAM222A (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
FAM222A (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Fam222a (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
FAM222A (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
FAM222A (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Fam222a (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus rattus (black rat):
Fam222a (family with sequence similarity 222 member A)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
PDAP1 (PDGFA associated protein 1)
HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
FAM222A (family with sequence similarity 222 member A)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
FAM222A (family with sequence similarity 222 member A)
Alliance
DIOPT (HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Fam222a (family with sequence similarity 222, member A)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Fam222a (family with sequence similarity 222, member A)
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
fam222a (family with sequence similarity 222 member A)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
fam222a (family with sequence similarity 222 member A)
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
fam222a
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
fam222a
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 47,647,221 - 47,693,703 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 12 47,647,405 - 47,693,703 (-) Ensembl GRCr8 mRatBN7.2 12 41,982,064 - 42,033,085 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 41,986,780 - 42,033,682 (-) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 12 43,155,111 - 43,200,387 (-) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 12 43,768,690 - 43,813,963 (-) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 12 42,829,191 - 42,874,470 (-) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 47,742,449 - 47,793,534 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 47,748,165 - 47,793,534 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 12 49,534,079 - 49,585,147 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 12 43,276,320 - 43,295,293 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 12 43,600,279 - 43,645,537 (-) NCBI Celera Cytogenetic Map 12 q16 NCBI
JBrowse:
Only show annotations with direct experimental evidence (0 objects hidden)
Fam222a Rat (1->4)-beta-D-glucan multiple interactions ISO Fam222a (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of FAM222A mRNA CTD PMID:36331819 Fam222a Rat 17beta-estradiol multiple interactions ISO FAM222A (Homo sapiens) 6480464 [Estradiol binds to ESR2 protein] which results in increased expression of FAM222A mRNA CTD PMID:20404318 Fam222a Rat 17beta-estradiol increases expression ISO FAM222A (Homo sapiens) 6480464 Estradiol results in increased expression of FAM222A mRNA CTD PMID:31614463 Fam222a Rat 17beta-estradiol increases expression ISO Fam222a (Mus musculus) 6480464 Estradiol results in increased expression of FAM222A mRNA CTD PMID:39298647 Fam222a Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Fam222a (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of FAM222A mRNA CTD PMID:28922406 Fam222a Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of FAM222A mRNA CTD PMID:33387578 Fam222a Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of FAM222A mRNA CTD PMID:32109520 Fam222a Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of FAM222A mRNA CTD PMID:27913140 Fam222a Rat 3-isobutyl-1-methyl-7H-xanthine multiple interactions ISO FAM222A (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 Fam222a Rat acrylamide decreases expression ISO Fam222a (Mus musculus) 6480464 Acrylamide results in decreased expression of FAM222A mRNA CTD PMID:30807115 Fam222a Rat aflatoxin B1 increases methylation ISO FAM222A (Homo sapiens) 6480464 Aflatoxin B1 results in increased methylation of FAM222A intron CTD PMID:30157460 Fam222a Rat all-trans-retinoic acid increases expression ISO FAM222A (Homo sapiens) 6480464 Tretinoin results in increased expression of FAM222A mRNA CTD PMID:23724009 Fam222a Rat aristolochic acid A increases expression ISO FAM222A (Homo sapiens) 6480464 aristolochic acid I results in increased expression of FAM222A mRNA CTD PMID:33212167 Fam222a Rat atrazine increases expression ISO FAM222A (Homo sapiens) 6480464 Atrazine results in increased expression of FAM222A mRNA CTD PMID:22378314 Fam222a Rat atrazine increases expression EXP 6480464 Atrazine results in increased expression of FAM222A mRNA CTD PMID:36841081 Fam222a Rat belinostat decreases expression ISO FAM222A (Homo sapiens) 6480464 belinostat results in decreased expression of FAM222A mRNA CTD PMID:26272509 Fam222a Rat belinostat multiple interactions ISO FAM222A (Homo sapiens) 6480464 [NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Fam222a Rat benzo[a]pyrene decreases expression ISO FAM222A (Homo sapiens) 6480464 Benzo(a)pyrene results in decreased expression of FAM222A mRNA CTD PMID:26238291 Fam222a Rat benzo[a]pyrene affects methylation ISO FAM222A (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of FAM222A 5' UTR; Benzo(a)pyrene affects the methylation of FAM222A exon CTD PMID:27901495 Fam222a Rat benzo[a]pyrene increases methylation ISO FAM222A (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of FAM222A promoter CTD PMID:27901495 Fam222a Rat benzo[e]pyrene increases methylation ISO FAM222A (Homo sapiens) 6480464 benzo(e)pyrene results in increased methylation of FAM222A intron CTD PMID:30157460 Fam222a Rat beta-lapachone decreases expression ISO FAM222A (Homo sapiens) 6480464 beta-lapachone results in decreased expression of FAM222A mRNA CTD PMID:38218311 Fam222a Rat bis(2-ethylhexyl) phthalate multiple interactions ISO Fam222a (Mus musculus) 6480464 [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ... CTD PMID:39150890 Fam222a Rat bis(2-ethylhexyl) phthalate increases methylation EXP 6480464 Diethylhexyl Phthalate results in increased methylation of FAM222A gene CTD PMID:33923623 Fam222a Rat bis(2-ethylhexyl) phthalate decreases expression ISO Fam222a (Mus musculus) 6480464 Diethylhexyl Phthalate results in decreased expression of FAM222A mRNA CTD PMID:34319233 Fam222a Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of FAM222A mRNA CTD PMID:25181051 Fam222a Rat bisphenol A decreases methylation ISO Fam222a (Mus musculus) 6480464 bisphenol A results in decreased methylation of FAM222A promoter CTD PMID:27312807 Fam222a Rat bisphenol F multiple interactions ISO FAM222A (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 Fam222a Rat bromobenzene increases expression EXP 6480464 bromobenzene results in increased expression of FAM222A mRNA CTD PMID:32479839 Fam222a Rat butanal increases expression ISO FAM222A (Homo sapiens) 6480464 butyraldehyde results in increased expression of FAM222A mRNA CTD PMID:26079696 Fam222a Rat Butylbenzyl phthalate multiple interactions ISO Fam222a (Mus musculus) 6480464 [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ... CTD PMID:39150890 Fam222a Rat Butylbenzyl phthalate increases methylation ISO Fam222a (Mus musculus) 6480464 butylbenzyl phthalate results in increased methylation of FAM222A intron CTD PMID:28392331 Fam222a Rat carbon nanotube decreases expression ISO Fam222a (Mus musculus) 6480464 Nanotubes, Carbon analog results in decreased expression of FAM222A mRNA; Nanotubes, Carbon results in decreased more ... CTD PMID:25554681 Fam222a Rat carbon nanotube increases expression ISO Fam222a (Mus musculus) 6480464 Nanotubes, Carbon analog results in increased expression of FAM222A mRNA; Nanotubes, Carbon results in increased more ... CTD PMID:25620056 Fam222a Rat chlorpyrifos increases expression ISO Fam222a (Mus musculus) 6480464 Chlorpyrifos results in increased expression of FAM222A mRNA CTD PMID:37019170 Fam222a Rat copper(II) sulfate decreases expression ISO FAM222A (Homo sapiens) 6480464 Copper Sulfate results in decreased expression of FAM222A mRNA CTD PMID:19549813 Fam222a Rat cyclosporin A decreases expression ISO FAM222A (Homo sapiens) 6480464 Cyclosporine results in decreased expression of FAM222A mRNA CTD PMID:25562108 Fam222a Rat cyclosporin A increases expression ISO FAM222A (Homo sapiens) 6480464 Cyclosporine results in increased expression of FAM222A mRNA CTD PMID:27989131 Fam222a Rat D-mannitol decreases expression ISO Fam222a (Mus musculus) 6480464 Mannitol results in decreased expression of FAM222A mRNA CTD PMID:25270620 Fam222a Rat DDE decreases expression ISO FAM222A (Homo sapiens) 6480464 Dichlorodiphenyl Dichloroethylene results in decreased expression of FAM222A mRNA CTD PMID:38568856 Fam222a Rat dexamethasone multiple interactions ISO FAM222A (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 Fam222a Rat dibutyl phthalate multiple interactions ISO Fam222a (Mus musculus) 6480464 [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ... CTD PMID:39150890 Fam222a Rat dichloroacetic acid decreases expression ISO Fam222a (Mus musculus) 6480464 Dichloroacetic Acid results in decreased expression of FAM222A mRNA CTD PMID:28962523 Fam222a Rat diethyl phthalate multiple interactions ISO Fam222a (Mus musculus) 6480464 [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ... CTD PMID:39150890 Fam222a Rat diisobutyl phthalate multiple interactions ISO Fam222a (Mus musculus) 6480464 [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ... CTD PMID:39150890 Fam222a Rat diisononyl phthalate multiple interactions ISO Fam222a (Mus musculus) 6480464 [diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ... CTD PMID:39150890 Fam222a Rat dioxygen decreases expression ISO FAM222A (Homo sapiens) 6480464 Oxygen deficiency results in decreased expression of FAM222A mRNA CTD PMID:26516004 Fam222a Rat dorsomorphin multiple interactions ISO FAM222A (Homo sapiens) 6480464 [NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Fam222a Rat doxorubicin decreases expression ISO FAM222A (Homo sapiens) 6480464 Doxorubicin results in decreased expression of FAM222A mRNA CTD PMID:29803840 Fam222a Rat entinostat decreases expression ISO FAM222A (Homo sapiens) 6480464 entinostat results in decreased expression of FAM222A mRNA CTD PMID:26272509 Fam222a Rat entinostat multiple interactions ISO FAM222A (Homo sapiens) 6480464 [NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Fam222a Rat epoxiconazole decreases expression ISO Fam222a (Mus musculus) 6480464 epoxiconazole results in decreased expression of FAM222A mRNA CTD PMID:35436446 Fam222a Rat fenofibrate increases expression ISO FAM222A (Homo sapiens) 6480464 Fenofibrate results in increased expression of FAM222A mRNA CTD PMID:25572481 Fam222a Rat indometacin multiple interactions ISO FAM222A (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ... CTD PMID:28628672 Fam222a Rat inulin multiple interactions ISO Fam222a (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of FAM222A mRNA CTD PMID:36331819 Fam222a Rat iron dichloride decreases expression ISO FAM222A (Homo sapiens) 6480464 ferrous chloride results in decreased expression of FAM222A mRNA CTD PMID:35984750 Fam222a Rat Licochalcone B increases expression ISO FAM222A (Homo sapiens) 6480464 licochalcone B results in increased expression of FAM222A mRNA CTD PMID:33647349 Fam222a Rat mercury dibromide decreases expression ISO FAM222A (Homo sapiens) 6480464 mercuric bromide results in decreased expression of FAM222A mRNA CTD PMID:26272509 Fam222a Rat mercury dibromide multiple interactions ISO FAM222A (Homo sapiens) 6480464 [NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Fam222a Rat methapyrilene increases methylation ISO FAM222A (Homo sapiens) 6480464 Methapyrilene results in increased methylation of FAM222A intron CTD PMID:30157460 Fam222a Rat methylisothiazolinone increases expression ISO FAM222A (Homo sapiens) 6480464 2-methyl-4-isothiazolin-3-one results in increased expression of FAM222A mRNA CTD PMID:31629900 Fam222a Rat N-methyl-4-phenylpyridinium increases expression ISO FAM222A (Homo sapiens) 6480464 1-Methyl-4-phenylpyridinium results in increased expression of FAM222A mRNA CTD PMID:24810058 Fam222a Rat okadaic acid increases expression ISO FAM222A (Homo sapiens) 6480464 Okadaic Acid results in increased expression of FAM222A mRNA CTD PMID:38832940 Fam222a Rat paracetamol increases expression ISO FAM222A (Homo sapiens) 6480464 Acetaminophen results in increased expression of FAM222A mRNA CTD PMID:29067470 Fam222a Rat paracetamol increases expression EXP 6480464 Acetaminophen results in increased expression of FAM222A mRNA CTD PMID:33387578 Fam222a Rat paraquat decreases expression EXP 6480464 Paraquat results in decreased expression of FAM222A mRNA CTD PMID:32680482 Fam222a Rat perfluorooctane-1-sulfonic acid multiple interactions ISO Fam222a (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of FAM222A mRNA; [perfluorooctane sulfonic more ... CTD PMID:36331819 Fam222a Rat phenylmercury acetate multiple interactions ISO FAM222A (Homo sapiens) 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Fam222a Rat quercetin decreases expression ISO FAM222A (Homo sapiens) 6480464 Quercetin results in decreased expression of FAM222A mRNA CTD PMID:21632981 Fam222a Rat resveratrol multiple interactions ISO FAM222A (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in decreased expression of FAM222A mRNA CTD PMID:23557933 Fam222a Rat SB 431542 multiple interactions ISO FAM222A (Homo sapiens) 6480464 [NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ... CTD PMID:27188386 Fam222a Rat silicon dioxide increases expression ISO FAM222A (Homo sapiens) 6480464 Silicon Dioxide analog results in increased expression of FAM222A mRNA CTD PMID:25895662 Fam222a Rat sodium arsenite increases expression ISO FAM222A (Homo sapiens) 6480464 sodium arsenite results in increased expression of FAM222A mRNA CTD PMID:38568856 Fam222a Rat sunitinib increases expression ISO FAM222A (Homo sapiens) 6480464 Sunitinib results in increased expression of FAM222A mRNA CTD PMID:31533062 Fam222a Rat tetrachloroethene decreases expression ISO Fam222a (Mus musculus) 6480464 Tetrachloroethylene results in decreased expression of FAM222A mRNA CTD PMID:28973375 Fam222a Rat tetrachloromethane increases expression EXP 6480464 Carbon Tetrachloride results in increased expression of FAM222A mRNA CTD PMID:31150632 Fam222a Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of FAM222A mRNA CTD PMID:34492290 Fam222a Rat thiram increases expression ISO FAM222A (Homo sapiens) 6480464 Thiram results in increased expression of FAM222A mRNA CTD PMID:38568856 Fam222a Rat triclosan decreases expression ISO FAM222A (Homo sapiens) 6480464 Triclosan results in decreased expression of FAM222A mRNA CTD PMID:30510588 Fam222a Rat triptonide increases expression ISO Fam222a (Mus musculus) 6480464 triptonide results in increased expression of FAM222A mRNA CTD PMID:33045310 Fam222a Rat urethane increases expression ISO FAM222A (Homo sapiens) 6480464 Urethane results in increased expression of FAM222A mRNA CTD PMID:28818685 Fam222a Rat valproic acid increases expression ISO FAM222A (Homo sapiens) 6480464 Valproic Acid results in increased expression of FAM222A mRNA CTD PMID:23179753|PMID:29154799 Fam222a Rat valproic acid affects expression ISO FAM222A (Homo sapiens) 6480464 Valproic Acid affects the expression of FAM222A mRNA CTD PMID:25979313 Fam222a Rat valproic acid increases methylation ISO FAM222A (Homo sapiens) 6480464 Valproic Acid results in increased methylation of FAM222A gene CTD PMID:29154799
References
Genomics
Comparative Map Data
Fam222a (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 47,647,221 - 47,693,703 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 12 47,647,405 - 47,693,703 (-) Ensembl GRCr8 mRatBN7.2 12 41,982,064 - 42,033,085 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 41,986,780 - 42,033,682 (-) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 12 43,155,111 - 43,200,387 (-) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 12 43,768,690 - 43,813,963 (-) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 12 42,829,191 - 42,874,470 (-) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 47,742,449 - 47,793,534 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 47,748,165 - 47,793,534 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 12 49,534,079 - 49,585,147 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 12 43,276,320 - 43,295,293 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 12 43,600,279 - 43,645,537 (-) NCBI Celera Cytogenetic Map 12 q16 NCBI
FAM222A (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 12 109,713,825 - 109,770,495 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 12 109,713,825 - 109,770,495 (+) Ensembl hg38 GRCh38 GRCh37 12 110,151,630 - 110,208,300 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 12 108,656,955 - 108,692,682 (+) NCBI Build 36 Build 36 hg18 NCBI36 Celera 12 109,776,479 - 109,832,599 (+) NCBI Celera Cytogenetic Map 12 q24.11 NCBI HuRef 12 107,168,401 - 107,224,456 (+) NCBI HuRef CHM1_1 12 110,119,970 - 110,176,122 (+) NCBI CHM1_1 T2T-CHM13v2.0 12 109,689,278 - 109,745,953 (+) NCBI T2T-CHM13v2.0
Fam222a (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 114,706,312 - 114,751,281 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 114,706,077 - 114,751,281 (+) Ensembl GRCm39 Ensembl GRCm39 GRCm38 5 114,568,251 - 114,613,220 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 114,568,016 - 114,613,220 (+) Ensembl mm10 GRCm38 MGSCv37 5 115,018,260 - 115,063,227 (+) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 5 114,829,250 - 114,874,217 (+) NCBI MGSCv36 mm8 Celera 5 111,665,314 - 111,710,745 (+) NCBI Celera Cytogenetic Map 5 F NCBI cM Map 5 55.99 NCBI
Fam222a (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955455 8,791,240 - 8,834,997 (-) Ensembl ChiLan1.0 NW_004955455 8,789,064 - 8,844,080 (-) NCBI ChiLan1.0 ChiLan1.0
FAM222A (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 10 117,780,720 - 117,837,382 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 12 117,777,122 - 117,833,786 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 12 107,289,765 - 107,346,439 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 12 110,685,500 - 110,741,651 (+) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 12 110,685,500 - 110,741,651 (+) Ensembl panPan2 panpan1.1
FAM222A (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 26 17,342,414 - 17,373,775 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 26 17,340,855 - 17,366,475 (-) Ensembl canFam3 CanFam3.1 CanFam3.1 Ensembl 26 17,340,855 - 17,366,475 (-) NCBI canFam3 CanFam3.1 Dog10K_Boxer_Tasha 26 18,407,238 - 18,462,863 (+) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 26 17,682,797 - 17,738,158 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 26 17,684,110 - 17,715,390 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 26 18,616,387 - 18,671,948 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 26 17,673,679 - 17,730,501 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 26 17,690,986 - 17,746,637 (-) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
Fam222a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 144,059,210 - 144,081,204 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936769 1,394,734 - 1,415,521 (+) Ensembl SpeTri2.0 Ensembl SpeTri2.0 NW_004936769 1,369,062 - 1,416,684 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
FAM222A (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 41,177,355 - 41,233,331 (-) Ensembl susScr11 Sscrofa11.1 Sscrofa11.1 14 41,177,331 - 41,233,859 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 43,693,114 - 43,749,937 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
FAM222A (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 11 104,950,072 - 105,007,173 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 11 104,950,904 - 105,005,947 (+) Ensembl ChlSab1.1 Ensembl chlSab2 Vervet-AGM Vero_WHO_p1.0 NW_023666037 140,112,308 - 140,169,230 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Fam222a (Heterocephalus glaber - naked mole-rat)
Fam222a (Rattus rattus - black rat)
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 110 Count of miRNA genes: 88 Interacting mature miRNAs: 98 Transcripts: ENSRNOT00000001588 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction