Cfap54 (cilia and flagella associated protein 54) - Rat Genome Database

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Gene: Cfap54 (cilia and flagella associated protein 54) Rattus norvegicus
Analyze
Symbol: Cfap54
Name: cilia and flagella associated protein 54
RGD ID: 1565866
Description: Predicted to be involved in cilium assembly; cilium movement involved in cell motility; and spermatogenesis. Predicted to act upstream of or within epithelial cilium movement involved in extracellular fluid movement; establishment of localization in cell; and sperm flagellum assembly. Predicted to be located in extracellular region. Orthologous to human CFAP54 (cilia and flagella associated protein 54); INTERACTS WITH atrazine; bisphenol A; glyphosate.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07056633.1; cilia and flagella associated 54; cilia- and flagella-associated protein 54; LOC102554778; LOC314740; RGD1565866; similar to FLJ44112 protein; uncharacterized LOC102554778
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8729,203,143 - 29,489,551 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl729,202,722 - 29,491,189 (-)EnsemblGRCr8
mRatBN7.2727,316,498 - 27,601,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl727,316,502 - 27,602,144 (-)EnsemblmRatBN7.2
Rnor_6.0733,623,692 - 33,916,849 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl733,702,770 - 33,793,565 (-)NCBIrn6Rnor6.0
Rnor_5.0733,697,102 - 33,882,972 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4729,868,634 - 30,038,401 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera724,421,100 - 24,703,815 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:26224312  


Genomics

Comparative Map Data
Cfap54
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8729,203,143 - 29,489,551 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl729,202,722 - 29,491,189 (-)EnsemblGRCr8
mRatBN7.2727,316,498 - 27,601,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl727,316,502 - 27,602,144 (-)EnsemblmRatBN7.2
Rnor_6.0733,623,692 - 33,916,849 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl733,702,770 - 33,793,565 (-)NCBIrn6Rnor6.0
Rnor_5.0733,697,102 - 33,882,972 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4729,868,634 - 30,038,401 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera724,421,100 - 24,703,815 (-)NCBICelera
Cytogenetic Map7q13NCBI
CFAP54
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381296,489,577 - 96,875,555 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1296,489,571 - 96,875,555 (+)Ensemblhg38GRCh38
GRCh371296,883,355 - 97,269,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361295,407,519 - 95,546,701 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1296,549,428 - 96,706,938 (+)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1293,945,652 - 94,221,189 (+)NCBIHuRef
CHM1_11296,931,919 - 97,234,274 (+)NCBICHM1_1
T2T-CHM13v2.01296,463,738 - 96,849,324 (+)NCBIT2T-CHM13v2.0
Cfap54
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391092,611,471 - 92,919,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1092,611,481 - 92,917,480 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381092,775,609 - 93,083,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1092,775,619 - 93,081,618 (-)Ensemblmm10GRCm38
MGSCv371092,331,454 - 92,544,363 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361092,298,508 - 92,511,701 (-)NCBIMGSCv36mm8
Celera1094,862,897 - 95,067,323 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1047.44NCBI
Cfap54
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540532,759,176 - 33,036,774 (+)Ensembl
ChiLan1.0NW_00495540532,728,455 - 33,036,612 (+)NCBIChiLan1.0ChiLan1.0
CFAP54
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210104,551,805 - 104,948,892 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112104,548,195 - 104,945,282 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01294,069,654 - 94,466,858 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11297,488,816 - 97,882,846 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1297,488,849 - 97,868,869 (+)EnsemblpanPan2panpan1.1
CFAP54
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11536,206,194 - 36,498,890 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1536,206,418 - 36,497,261 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1536,591,367 - 36,882,248 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01536,871,401 - 37,162,169 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1536,871,396 - 37,161,622 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11536,143,401 - 36,434,121 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01536,237,597 - 36,527,911 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01536,501,755 - 36,799,155 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cfap54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494523,462,465 - 23,750,961 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650712,484,595 - 12,772,950 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP54
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl586,792,450 - 87,102,623 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1586,792,443 - 87,102,621 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2591,180,101 - 91,258,194 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP54
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11191,853,456 - 92,226,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037152,873,257 - 153,273,449 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap54
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475010,575,933 - 10,902,388 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cfap54
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11171,864,768 - 172,141,244 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cfap54
1610 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
D7Rat104  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8729,298,467 - 29,298,696 (+)Marker Load Pipeline
mRatBN7.2727,411,344 - 27,411,573 (+)MAPPERmRatBN7.2
Rnor_6.0733,721,807 - 33,722,035NCBIRnor6.0
Rnor_5.0733,790,817 - 33,791,045UniSTSRnor5.0
RGSC_v3.4729,892,467 - 29,892,696RGDRGSC3.4
RGSC_v3.4729,892,468 - 29,892,696UniSTSRGSC3.4
Celera724,517,850 - 24,518,078UniSTS
RGSC_v3.1729,912,738 - 29,912,967RGD
FHH x ACI Map77.8699UniSTS
FHH x ACI Map77.8699RGD
Cytogenetic Map7q13UniSTS
D7Got18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2727,420,173 - 27,420,450 (+)MAPPERmRatBN7.2
Rnor_6.0733,730,636 - 33,730,912NCBIRnor6.0
Rnor_5.0733,799,646 - 33,799,922UniSTSRnor5.0
RGSC_v3.4729,901,296 - 29,901,570RGDRGSC3.4
RGSC_v3.4729,901,297 - 29,901,573UniSTSRGSC3.4
Celera724,526,678 - 24,526,954UniSTS
RGSC_v3.1729,921,567 - 29,921,841RGD
RH 3.4 Map7183.7UniSTS
RH 3.4 Map7183.7RGD
RH 2.0 Map7178.0RGD
Cytogenetic Map7q13UniSTS
RH138022  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2727,416,429 - 27,416,667 (+)MAPPERmRatBN7.2
Rnor_6.0733,726,892 - 33,727,129NCBIRnor6.0
Rnor_5.0733,795,902 - 33,796,139UniSTSRnor5.0
RGSC_v3.4729,897,553 - 29,897,790UniSTSRGSC3.4
Celera724,522,934 - 24,523,171UniSTS
RH 3.4 Map7183.7UniSTS
Cytogenetic Map7q13UniSTS
RH144589  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2727,359,921 - 27,360,080 (+)MAPPERmRatBN7.2
Rnor_6.0733,669,761 - 33,669,919NCBIRnor6.0
Rnor_5.0733,739,587 - 33,739,745UniSTSRnor5.0
RGSC_v3.4729,840,193 - 29,840,351UniSTSRGSC3.4
Celera724,466,124 - 24,466,282UniSTS
RH 3.4 Map7181.5UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
6 1 16 45 20 78 45 10 45 27 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001057963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002726895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005492   ⟹   ENSRNOP00000005492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl729,323,067 - 29,491,189 (-)Ensembl
mRatBN7.2 Ensembl727,435,947 - 27,602,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000065354   ⟹   ENSRNOP00000063853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl729,202,722 - 29,491,189 (-)Ensembl
mRatBN7.2 Ensembl727,316,502 - 27,602,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094647   ⟹   ENSRNOP00000076371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl729,203,149 - 29,488,799 (-)Ensembl
mRatBN7.2 Ensembl727,316,502 - 27,601,790 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104436   ⟹   ENSRNOP00000078736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl729,202,944 - 29,488,799 (-)Ensembl
mRatBN7.2 Ensembl727,316,502 - 27,602,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114083   ⟹   ENSRNOP00000094294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl729,202,742 - 29,490,552 (-)Ensembl
mRatBN7.2 Ensembl727,316,502 - 27,602,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118957   ⟹   ENSRNOP00000078236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl729,202,722 - 29,491,189 (-)Ensembl
mRatBN7.2 Ensembl727,316,502 - 27,602,144 (-)Ensembl
RefSeq Acc Id: XM_039080082   ⟹   XP_038936010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,203,143 - 29,489,551 (-)NCBI
mRatBN7.2727,316,498 - 27,601,630 (-)NCBI
RefSeq Acc Id: XM_039080083   ⟹   XP_038936011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,203,143 - 29,489,551 (-)NCBI
mRatBN7.2727,316,498 - 27,601,630 (-)NCBI
RefSeq Acc Id: XM_039080084   ⟹   XP_038936012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,203,143 - 29,489,551 (-)NCBI
mRatBN7.2727,316,498 - 27,601,630 (-)NCBI
RefSeq Acc Id: XM_039080085   ⟹   XP_038936013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,203,143 - 29,489,551 (-)NCBI
mRatBN7.2727,316,498 - 27,601,630 (-)NCBI
RefSeq Acc Id: XM_039080086   ⟹   XP_038936014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,203,143 - 29,489,551 (-)NCBI
mRatBN7.2727,316,498 - 27,601,630 (-)NCBI
RefSeq Acc Id: XM_039080088   ⟹   XP_038936016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,338,583 - 29,489,551 (-)NCBI
mRatBN7.2727,451,467 - 27,601,629 (-)NCBI
RefSeq Acc Id: XM_039080089   ⟹   XP_038936017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,362,433 - 29,489,551 (-)NCBI
mRatBN7.2727,475,344 - 27,601,628 (-)NCBI
RefSeq Acc Id: XM_063264407   ⟹   XP_063120477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,203,143 - 29,489,551 (-)NCBI
RefSeq Acc Id: XR_005486835
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8729,226,220 - 29,489,551 (-)NCBI
mRatBN7.2727,339,086 - 27,601,630 (-)NCBI
RefSeq Acc Id: XP_038936013   ⟸   XM_039080085
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AZY6 (UniProtKB/TrEMBL),   F1M063 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936014   ⟸   XM_039080086
- Peptide Label: isoform X6
- UniProtKB: F1M063 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936011   ⟸   XM_039080083
- Peptide Label: isoform X2
- UniProtKB: F1M063 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936012   ⟸   XM_039080084
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZKH9 (UniProtKB/TrEMBL),   F1M063 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936010   ⟸   XM_039080082
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZLU8 (UniProtKB/TrEMBL),   F1M063 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936016   ⟸   XM_039080088
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038936017   ⟸   XM_039080089
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000076371   ⟸   ENSRNOT00000094647
Ensembl Acc Id: ENSRNOP00000078236   ⟸   ENSRNOT00000118957
Ensembl Acc Id: ENSRNOP00000005492   ⟸   ENSRNOT00000005492
Ensembl Acc Id: ENSRNOP00000094294   ⟸   ENSRNOT00000114083
Ensembl Acc Id: ENSRNOP00000063853   ⟸   ENSRNOT00000065354
Ensembl Acc Id: ENSRNOP00000078736   ⟸   ENSRNOT00000104436
RefSeq Acc Id: XP_063120477   ⟸   XM_063264407
- Peptide Label: isoform X4
- UniProtKB: A0A8I5YB90 (UniProtKB/TrEMBL),   F1M063 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M063-F1-model_v2 AlphaFold F1M063 1-1206 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565866 AgrOrtholog
BioCyc Gene G2FUF-34426 BioCyc
Ensembl Genes ENSRNOG00000024494 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005492 ENTREZGENE
  ENSRNOT00000005492.10 UniProtKB/TrEMBL
  ENSRNOT00000065354.4 UniProtKB/TrEMBL
  ENSRNOT00000094647 ENTREZGENE
  ENSRNOT00000094647.2 UniProtKB/TrEMBL
  ENSRNOT00000104436 ENTREZGENE
  ENSRNOT00000104436.2 UniProtKB/TrEMBL
  ENSRNOT00000114083 ENTREZGENE
  ENSRNOT00000114083.2 UniProtKB/TrEMBL
  ENSRNOT00000118957 ENTREZGENE
  ENSRNOT00000118957.2 UniProtKB/TrEMBL
InterPro CFAP54 UniProtKB/TrEMBL
NCBI Gene 314740 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 UniProtKB/TrEMBL
Pfam CFAP54_N UniProtKB/TrEMBL
PhenoGen Cfap54 PhenoGen
RatGTEx ENSRNOG00000024494 RatGTEx
UniProt A0A8I5YB90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AZY6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAE4_RAT UniProtKB/TrEMBL
  F1M063 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Cfap54  cilia and flagella associated protein 54  AABR07056633.1    Data merged from RGD:15003589 737654 PROVISIONAL
2021-12-21 Cfap54  cilia and flagella associated protein 54  RGD1565866  similar to FLJ44112 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-12-21 RGD1565866  similar to FLJ44112 protein  Cfap54  cilia and flagella associated protein 54  Data merged from RGD:1589470 737654 PROVISIONAL
2019-11-08 AABR07056633.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-06-15 Cfap54  cilia and flagella associated protein 54  Cfap54  cilia and flagella associated 54  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 RGD1565866  similar to FLJ44112 protein  LOC102554778  uncharacterized LOC102554778  Data merged from RGD:7743324 737654 PROVISIONAL
2014-11-04 Cfap54  cilia and flagella associated 54  LOC680606  hypothetical protein LOC680606  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102554778  uncharacterized LOC102554778      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 RGD1565866  similar to FLJ44112 protein  LOC687814  hypothetical protein LOC687814  Data merged from RGD:1596289 1643240 APPROVED
2008-04-30 RGD1565866  similar to FLJ44112 protein   RGD1565866_predicted  similar to FLJ44112 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC687814  hypothetical protein LOC687814      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680606  hypothetical protein LOC680606      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1565866_predicted  similar to FLJ44112 protein (predicted)  LOC314740  similar to FLJ44112 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314740  similar to FLJ44112 protein      Symbol and Name status set to provisional 70820 PROVISIONAL