Wfikkn1 (WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1) - Rat Genome Database

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Gene: Wfikkn1 (WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1) Rattus norvegicus
Analyze
Symbol: Wfikkn1
Name: WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1
RGD ID: 1565835
Description: Predicted to enable receptor antagonist activity and transforming growth factor beta binding activity. Predicted to be involved in negative regulation of transforming growth factor beta receptor signaling pathway and transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within muscle cell development; roof of mouth development; and skeletal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human WFIKKN1 (WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1); INTERACTS WITH 6-propyl-2-thiouracil; all-trans-retinoic acid; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC363555; Oc29; RGD1565835; similar to WFIKKN1 protein precursor; WAP, FS, Ig, KU, and NTR-containing protein 1; WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,400,953 - 15,403,280 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21014,896,442 - 14,898,770 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,896,378 - 14,899,863 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,635,433 - 19,637,760 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,124,311 - 19,126,638 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,624,649 - 14,626,973 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,243,429 - 15,245,757 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,243,429 - 15,245,757 (-)Ensemblrn6Rnor6.0
Rnor_5.01015,056,372 - 15,058,700 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,141,826 - 15,144,154 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,565,306 - 14,567,634 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822   PMID:15497143   PMID:21054789   PMID:24019467  


Genomics

Comparative Map Data
Wfikkn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,400,953 - 15,403,280 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21014,896,442 - 14,898,770 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,896,378 - 14,899,863 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,635,433 - 19,637,760 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,124,311 - 19,126,638 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,624,649 - 14,626,973 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,243,429 - 15,245,757 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,243,429 - 15,245,757 (-)Ensemblrn6Rnor6.0
Rnor_5.01015,056,372 - 15,058,700 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,141,826 - 15,144,154 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,565,306 - 14,567,634 (-)NCBICelera
Cytogenetic Map10q12NCBI
WFIKKN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816630,985 - 634,117 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16629,239 - 634,117 (+)Ensemblhg38GRCh38
GRCh3716680,985 - 684,117 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616621,013 - 624,117 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3416621,012 - 624,117NCBI
Celera16881,146 - 884,250 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16602,311 - 605,379 (+)NCBIHuRef
CHM1_116680,850 - 683,953 (+)NCBICHM1_1
T2T-CHM13v2.016635,019 - 638,150 (+)NCBIT2T-CHM13v2.0
Wfikkn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,096,602 - 26,099,832 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,096,602 - 26,099,832 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381725,877,628 - 25,880,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,877,628 - 25,880,858 (-)Ensemblmm10GRCm38
MGSCv371726,014,573 - 26,017,803 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361725,605,228 - 25,608,458 (-)NCBIMGSCv36mm8
Celera1726,410,684 - 26,413,914 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.97NCBI
Wfikkn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,569,046 - 16,577,650 (-)Ensembl
ChiLan1.0NW_00495544216,573,094 - 16,577,650 (-)NCBIChiLan1.0ChiLan1.0
WFIKKN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218869,496 - 874,370 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,653,362 - 4,658,288 (+)NCBINHGRI_mPanPan1
PanPan1.116643,764 - 647,044 (+)NCBIPanPan1.1PanPan1.1panPan2
WFIKKN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,934,105 - 39,937,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,934,068 - 39,936,628 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha641,197,722 - 41,201,278 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0640,276,276 - 40,279,832 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,276,277 - 40,278,783 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,964,800 - 39,968,355 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,924,986 - 39,928,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,404,167 - 40,407,723 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Wfikkn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,273,468 - 112,277,650 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501371,384 - 373,859 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936501371,328 - 375,271 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WFIKKN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,136,202 - 41,138,785 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1341,136,200 - 41,139,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WFIKKN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15547,499 - 554,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5547,795 - 554,019 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606830,584,546 - 30,588,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wfikkn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,443,399 - 1,448,669 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249131,442,351 - 1,446,249 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Wfikkn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v193,141,213 - 3,144,596 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Wfikkn1
28 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:70
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000060156
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH141016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21014,901,050 - 14,901,231 (+)MAPPERmRatBN7.2
Rnor_6.01015,248,038 - 15,248,218NCBIRnor6.0
Rnor_5.01015,060,981 - 15,061,161UniSTSRnor5.0
RGSC_v3.41015,146,435 - 15,146,615UniSTSRGSC3.4
Celera1014,569,915 - 14,570,095UniSTS
RH 3.4 Map10156.7UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 65 161 91 90 59 92 59 6 354 190 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060156   ⟹   ENSRNOP00000056900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1015,400,351 - 15,440,659 (-)Ensembl
mRatBN7.2 Ensembl1014,896,378 - 14,899,863 (-)Ensembl
Rnor_6.0 Ensembl1015,243,429 - 15,245,757 (-)Ensembl
RefSeq Acc Id: NM_001129776   ⟹   NP_001123248
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,400,953 - 15,403,280 (-)NCBI
mRatBN7.21014,896,442 - 14,898,770 (-)NCBI
Rnor_6.01015,243,429 - 15,245,757 (-)NCBI
Rnor_5.01015,056,372 - 15,058,700 (-)NCBI
RGSC_v3.41015,141,826 - 15,144,154 (-)RGD
Celera1014,565,306 - 14,567,634 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001123248 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03980 (Get FASTA)   NCBI Sequence Viewer  
  P0C5J5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001123248   ⟸   NM_001129776
- Peptide Label: precursor
- UniProtKB: P0C5J5 (UniProtKB/Swiss-Prot),   A0A8L2UMW2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056900   ⟸   ENSRNOT00000060156
Protein Domains
BPTI/Kunitz inhibitor   Ig-like C2-type   Kazal-like   NTR   WAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0C5J5-F1-model_v2 AlphaFold P0C5J5 1-552 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565835 AgrOrtholog
BioCyc Gene G2FUF-25744 BioCyc
Ensembl Genes ENSRNOG00000021578 Ensembl
Gene3D-CATH 2.40.50.120 UniProtKB/Swiss-Prot
  2.60.40.10 UniProtKB/Swiss-Prot
  3.30.60.30 UniProtKB/Swiss-Prot
  4.10.410.10 UniProtKB/Swiss-Prot
  4.10.75.10 UniProtKB/Swiss-Prot
InterPro Elafin-like_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Kazal_dom UniProtKB/Swiss-Prot
  Kazal_dom_sf UniProtKB/Swiss-Prot
  Kunitz_BPTI UniProtKB/Swiss-Prot
  Kunitz_BPTI_sf UniProtKB/Swiss-Prot
  Netrin_domain UniProtKB/Swiss-Prot
  Prtase_inh_Kunz-CS UniProtKB/Swiss-Prot
  TIMP-like_OB-fold UniProtKB/Swiss-Prot
  WAP_dom UniProtKB/Swiss-Prot
  WFIKKN1 UniProtKB/Swiss-Prot
KEGG Report rno:363555 UniProtKB/Swiss-Prot
NCBI Gene 363555 ENTREZGENE
PANTHER ACP24A4-RELATED UniProtKB/Swiss-Prot
  PTHR45938:SF6 UniProtKB/Swiss-Prot
Pfam Ig_3 UniProtKB/Swiss-Prot
  Kunitz_BPTI UniProtKB/Swiss-Prot
  WAP UniProtKB/Swiss-Prot
PhenoGen Wfikkn1 PhenoGen
PRINTS BASICPTASE UniProtKB/Swiss-Prot
PROSITE BPTI_KUNITZ_1 UniProtKB/Swiss-Prot
  BPTI_KUNITZ_2 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
  KAZAL_2 UniProtKB/Swiss-Prot
  NTR UniProtKB/Swiss-Prot
  WAP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021578 RatGTEx
SMART IGc2 UniProtKB/Swiss-Prot
  SM00131 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
  WAP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot
  SSF48726 UniProtKB/Swiss-Prot
  SSF50242 UniProtKB/Swiss-Prot
  SSF57256 UniProtKB/Swiss-Prot
  SSF57362 UniProtKB/Swiss-Prot
UniProt A0A8L2UMW2 ENTREZGENE, UniProtKB/TrEMBL
  P0C5J5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-02-11 Wfikkn1  WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1  Wfikkn1  WAP, FS, Ig, KU, and NTR-containing protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Wfikkn1  WAP, FS, Ig, KU, and NTR-containing protein 1  Wfikkn1_predicted  WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Wfikkn1_predicted  WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 (predicted)  RGD1565835_predicted  similar to WFIKKN1 protein precursor (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1565835_predicted  similar to WFIKKN1 protein precursor (predicted)  LOC363555  similar to WFIKKN1 protein precursor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363555  similar to WFIKKN1 protein precursor      Symbol and Name status set to provisional 70820 PROVISIONAL