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Gene: Surf2 (surfeit 2) Rattus norvegicus

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Symbol:

Surf2

Name:

surfeit 2

RGD ID:

1565817

Description:

Predicted to be located in nuclear speck; nucleolus; and plasma membrane. Orthologous to human SURF2 (surfeit 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC100912042; surfeit gene 2; surfeit locus protein 2; surfeit locus protein 2-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SURF2 (surfeit 2)	HGNC	Ensembl, Inparanoid, NCBI, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Surf2 (surfeit gene 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Surf2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SURF2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SURF2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Surf2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SURF2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SURF2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Surf2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Surf2 (surfeit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SURF2 (surfeit 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Surf2 (surfeit gene 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	surf2 (surfeit 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	surf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	surf2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	30,642,735 - 30,648,525 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	30,642,729 - 30,647,198 (+)	Ensembl				GRCr8
mRatBN7.2	3	10,244,654 - 10,248,502 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,244,654 - 10,250,077 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	13,304,671 - 13,308,489 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	21,890,072 - 21,893,890 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	20,145,373 - 20,149,191 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	5,464,593 - 5,468,426 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,464,424 - 5,468,244 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	3	4,872,497 - 4,876,317 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	10,826,503 - 10,830,336 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	5,813,520 - 5,817,338 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	5,042,710 - 5,046,528 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

enzyme inhibitor (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

L-methionine (ISO)

methimazole (EXP)

okadaic acid (ISO)

paracetamol (ISO)

perfluorononanoic acid (ISO)

phenobarbital (EXP)

rotenone (EXP,ISO)

senecionine (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Surf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	30,642,735 - 30,648,525 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	30,642,729 - 30,647,198 (+)	Ensembl				GRCr8
mRatBN7.2	3	10,244,654 - 10,248,502 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,244,654 - 10,250,077 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	13,304,671 - 13,308,489 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	21,890,072 - 21,893,890 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	20,145,373 - 20,149,191 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	5,464,593 - 5,468,426 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,464,424 - 5,468,244 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	3	4,872,497 - 4,876,317 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	10,826,503 - 10,830,336 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	5,813,520 - 5,817,338 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	5,042,710 - 5,046,528 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

SURF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	133,356,550 - 133,361,158 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	133,356,545 - 133,362,215 (+)	Ensembl			hg38	GRCh38
GRCh37	9	136,223,426 - 136,228,034 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	135,213,249 - 135,217,855 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	133,252,981 - 133,257,586	NCBI
Celera	9	106,773,900 - 106,778,519 (+)	NCBI		Celera
Cytogenetic Map	9	q34.2	NCBI
HuRef	9	105,723,321 - 105,727,941 (+)	NCBI		HuRef
CHM1_1	9	136,373,564 - 136,378,184 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	145,570,504 - 145,575,112 (+)	NCBI		T2T-CHM13v2.0

Surf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	26,806,420 - 26,810,199 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	26,806,379 - 26,810,195 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	26,916,372 - 26,920,187 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	26,916,367 - 26,920,183 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	26,771,941 - 26,775,692 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	26,738,430 - 26,742,181 (+)	NCBI		MGSCv36	mm8
Celera	2	26,626,166 - 26,629,917 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.1	NCBI

Surf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	2,711,679 - 2,714,789 (+)	Ensembl
ChiLan1.0	NW_004955513	2,711,605 - 2,715,667 (+)	NCBI	ChiLan1.0	ChiLan1.0

SURF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	5,992,098 - 5,996,839 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	5,994,434 - 5,999,175 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	104,479,741 - 104,484,493 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	133,091,321 - 133,096,052 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	133,091,321 - 133,096,054 (+)	Ensembl			panPan2	panpan1.1

SURF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	49,790,187 - 49,794,102 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	49,790,186 - 49,793,623 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	49,071,689 - 49,075,588 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	50,664,233 - 50,668,142 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	50,664,220 - 50,668,095 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	49,426,674 - 49,430,573 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	49,768,168 - 49,772,068 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	49,846,164 - 49,850,064 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Surf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	199,847,355 - 199,851,010 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	3,522,845 - 3,527,644 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	3,524,070 - 3,527,697 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SURF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	272,970,548 - 272,975,293 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	272,970,522 - 272,976,188 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SURF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	4,775,521 - 4,780,468 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	4,775,554 - 4,780,428 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666058	208,150 - 213,120 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Surf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	1,819,049 - 1,822,161 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	1,819,028 - 1,822,179 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Surf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	9,734,521 - 9,738,422 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Surf2
37 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	402
Count of miRNA genes:	201
Interacting mature miRNAs:	229
Transcripts:	ENSRNOT00000006889, ENSRNOT00000075095
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH128837

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,248,455 - 10,248,639 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,468,380 - 5,468,563	NCBI	Rnor6.0
Rnor_6.0	3	4,876,453 - 4,876,636	NCBI	Rnor6.0
Rnor_5.0	3	10,231,650 - 10,231,833	UniSTS	Rnor5.0
Rnor_5.0	3	10,830,290 - 10,830,473	UniSTS	Rnor5.0
RGSC_v3.4	3	5,817,296 - 5,817,479	UniSTS	RGSC3.4
Celera	3	5,046,486 - 5,046,669	UniSTS
Cytogenetic Map	3	p12	UniSTS

RH143929

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	30,645,608 - 30,646,248 (+)	Marker Load Pipeline
mRatBN7.2	3	10,247,533 - 10,248,173 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,467,458 - 5,468,097	NCBI	Rnor6.0
Rnor_6.0	3	4,875,531 - 4,876,170	NCBI	Rnor6.0
Rnor_5.0	3	10,230,728 - 10,231,367	UniSTS	Rnor5.0
Rnor_5.0	3	10,829,368 - 10,830,007	UniSTS	Rnor5.0
RGSC_v3.4	3	5,816,374 - 5,817,013	UniSTS	RGSC3.4
Celera	3	5,045,564 - 5,046,203	UniSTS
RH 3.4 Map	3	21.9	UniSTS
Cytogenetic Map	3	p12	UniSTS

BI280930

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,248,203 - 10,248,372 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	4,876,201 - 4,876,369	NCBI	Rnor6.0
Rnor_6.0	3	5,468,128 - 5,468,296	NCBI	Rnor6.0
Rnor_5.0	3	10,231,398 - 10,231,566	UniSTS	Rnor5.0
Rnor_5.0	3	10,830,038 - 10,830,206	UniSTS	Rnor5.0
RGSC_v3.4	3	5,817,044 - 5,817,212	UniSTS	RGSC3.4
Celera	3	5,046,234 - 5,046,402	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	44	115	16	16	16	67	16	204	121	11	114	60	61	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO384344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006889 ⟹ ENSRNOP00000006889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	5,464,424 - 5,468,244 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075095 ⟹ ENSRNOP00000065830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	4,872,497 - 4,876,317 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105139 ⟹ ENSRNOP00000083643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	30,642,729 - 30,647,198 (+)	Ensembl
mRatBN7.2 Ensembl	3	10,244,654 - 10,250,077 (+)	Ensembl

RefSeq Acc Id:

NM_001033866 ⟹ NP_001029038

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	30,642,755 - 30,646,573 (+)	NCBI
mRatBN7.2	3	10,244,680 - 10,248,498 (+)	NCBI
Rnor_6.0	3	5,464,604 - 5,468,422 (+)	NCBI
Rnor_5.0	3	10,826,503 - 10,830,336 (+)	NCBI
RGSC_v3.4	3	5,813,520 - 5,817,338 (+)	RGD
Celera	3	5,042,710 - 5,046,528 (+)	RGD

Sequence:

show sequence

TGGTGGCTGTGGCGTCAGATGGCGTCTCCGATCATGGACGAACCACCTTCTGATGTGCTTGCAT
TTCTGCGTCAGCACCCCAGCTTGAGACTGCTGCCCAACACCCACAAGGTACGCTGCTCGCTAAC
CGGTCATGAGCTTCCCTGCCGTCTGCCGGACCTCCAAGTCTACACTAGCGGCAAGAAGTACCAG
CGGCTCTCAAGTGCCTTCTCTGCCTTCGATTACACAGCGTTCGAGCCACACATTGTGCCCAGCA
CAAAGAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAACAAGTCCCCAGAACA
TGTGCTGAGGCACACTCGGGGCCGGAGGTATCAGAGAGCACTTCAAAAATATGAAGAGTGTCAG
AAACAAGGGGTGGAGTATGTGCCTGCCTGCCTTCTACACAAGAGGAAGAAGAGGGAGGACCAGA
TGGATGTCGATGACCTCCCAGGCCAGAGAACAGAATTCTGGGAACCAACTTCCAGTGACGAGGG
AGGCGCCTTGAGTGATGACAGCATGACAGACCTATACCCACCTGAGCTGTTCACAGAGAGAGAA
CTGCTCAAGCCTGAAGACTTTCAGACAGACCAACAGGAGAAGCCCAAACAGTCAGAAAAGAGCA
CTGCACAGAGAGAAGCCAAAGTGGGCCACAAGAGGGGCCGTAAACTCAGGAAGAAGGAGCTCAC
CCCGTTGACCAAGAAGTTCAAAAGCCATCATCACAAGCCCAAGAACTTCAGTTCCTTTAAGCAG
CTAGGGAGCTGAAGCCTGTAAAGAAAGCCTTTGGGTGTCCTTGGAACTGGCCACTGATGTCCTG
ACACTGGCTGCTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCATCAGCGGGGTTGA
AGATTCCTCTCCATGCATGGCTTTCTTCATAGTGTTCAGTGACCCTTGCTGTAGCTTACTGTAG
CATCCTGAGCCTGGCCAGGTCCCCAGCCCTGGCTGGTCACCACATAGGACCACACTGTACACCA
AATGCCATTATTTATTTTGATGTTTCCAAAGATCAAAACATTTCAAACACAACTAAGATATAAA
ATACAGCATAAAAATGAGGTTTATACCTATTCCCACATAAAGCTAAAGCATTTTCAGAAAACTT
TTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233723 ⟹ XP_006233785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	30,642,735 - 30,648,525 (+)	NCBI
mRatBN7.2	3	10,244,654 - 10,248,502 (+)	NCBI

Sequence:

show sequence

TCCGCCTCACGTGGTGGCTGTGGCGTCAGATGGCGTCTCCGATCATGGACGAACCACCTTCTGA
TGTGCTTGCATTTCTGCGTCAGCACCCCAGCTTGAGACTGCTGCCCAACACCCACAAGGTACGC
TGCTCGCTAACCGGTCATGAGCTTCCCTGCCGTCTGCCGGACCTCCAAGTCTACACTAGCGGCA
AGAAGTACCAGCGGCTCTCAAGTGCCTTCTCTGCCTTCGATTACACAGCGTTCGAGCCACACAT
TGTGCCCAGCACAAAGAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAACAAG
TCCCCAGAACATGTGCTGAGGCACACTCGGGGCCGGAGGTATCAGAGAGCACTTCAAAAATATG
AAGAGTGTCAGAAACAAGGGGTGGAGTATGTGCCTGCCTGCCTTCTACACAAGAGGAAGAAGAG
GGAGGACCAGATGGATGTCGATGACCTCCCAGGCCAGAGAACAGAATTCTGGGAACCAACTTCC
AGTGACGAGGGAGGCGCCTTGAGTGATGACAGCATGACAGACCTATACCCACCTGAGCTGTTCA
CAGAGAGAGAACTGCTCAAGCCTGAAGACTTTCAGACAGACCAACAGGAGAAGCCCAAACAGTC
AGAAAAGAGCACTGCACAGAGAGAAGCCAAAGTGGGCCACAAGAGGGGCCGTAAACTCAGGAAG
GAGCTCACCCCGTTGACCAAGAAGTTCAAAAGCCATCATCACAAGCCCAAGAACTTCAGTTCCT
TTAAGCAGCTAGGGAGCTGAAGCCTGTAAAGAAAGCCTTTGGGTGTCCTTGGAACTGGCCACTG
ATGTCCTGACACTGGCTGCTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCATCAGC
GGGGTTGAAGATTCCTCTCCATGCATGGCTTTCTTCATAGTGTTCAGTGACCCTTGCTGTAGCT
TACTGTAGCATCCTGAGCCTGGCCAGGTCCCCAGCCCTGGCTGGTCACCACATAGGACCACACT
GTACACCAAATGCCATTATTTATTTTGATGTTTCCAAAGATCAAAACATTTCAAACACAACTAA
GATATAAAATACAGCATAAAAATGAGGTTTATACCTATTCCCACATAAAGCTAAAGCATTTTCA
GAAAACTTTTGCCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001029038	(Get FASTA)	NCBI Sequence Viewer
	XP_006233785	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH59157	(Get FASTA)	NCBI Sequence Viewer
	EDL93454	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000083643
	ENSRNOP00000083643.1

RefSeq Acc Id:

NP_001029038 ⟸ NM_001033866

- UniProtKB:

Q6PCU1 (UniProtKB/TrEMBL), A6JTJ3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPIMDEPPSDVLAFLRQHPSLRLLPNTHKVRCSLTGHELPCRLPDLQVYTSGKKYQRLSSAF
SAFDYTAFEPHIVPSTKNRHQLFCKLTLRHINKSPEHVLRHTRGRRYQRALQKYEECQKQGVEY
VPACLLHKRKKREDQMDVDDLPGQRTEFWEPTSSDEGGALSDDSMTDLYPPELFTERELLKPED
FQTDQQEKPKQSEKSTAQREAKVGHKRGRKLRKKELTPLTKKFKSHHHKPKNFSSFKQLGS

hide sequence

Ensembl Acc Id:

ENSRNOP00000006889 ⟸ ENSRNOT00000006889

RefSeq Acc Id:	XP_006233785 ⟸ XM_006233723
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZX02 (UniProtKB/TrEMBL), Q6PCU1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPIMDEPPSDVLAFLRQHPSLRLLPNTHKVRCSLTGHELPCRLPDLQVYTSGKKYQRLSSAF SAFDYTAFEPHIVPSTKNRHQLFCKLTLRHINKSPEHVLRHTRGRRYQRALQKYEECQKQGVEY VPACLLHKRKKREDQMDVDDLPGQRTEFWEPTSSDEGGALSDDSMTDLYPPELFTERELLKPED FQTDQQEKPKQSEKSTAQREAKVGHKRGRKLRKELTPLTKKFKSHHHKPKNFSSFKQLGS hide sequence

Ensembl Acc Id:

ENSRNOP00000065830 ⟸ ENSRNOT00000075095

Ensembl Acc Id:

ENSRNOP00000083643 ⟸ ENSRNOT00000105139

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V6N4-F1-model_v2	AlphaFold	G3V6N4	1-253	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691917

Promoter ID:

EPDNEW_R2442

Type:

initiation region

Name:

Surf2_1

Description:

surfeit 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	5,464,620 - 5,464,680	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565817	AgrOrtholog
BioCyc Gene	G2FUF-50319	BioCyc
Ensembl Genes	ENSRNOG00000005167	Ensembl
	ENSRNOG00000047187	Ensembl
	ENSRNOG00000066832	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000105139	ENTREZGENE
	ENSRNOT00000105139.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6918490	IMAGE-MGC_LOAD
InterPro	Surf2	UniProtKB/TrEMBL
KEGG Report	rno:619345	UniProtKB/TrEMBL
MGC_CLONE	MGC:72956	IMAGE-MGC_LOAD
NCBI Gene	619345	ENTREZGENE
PANTHER	SURFEIT LOCUS PROTEIN 2	UniProtKB/TrEMBL
	SURFEIT LOCUS PROTEIN 2	UniProtKB/TrEMBL
Pfam	SURF2	UniProtKB/TrEMBL
PhenoGen	Surf2	PhenoGen
RatGTEx	ENSRNOG00000005167	RatGTEx
	ENSRNOG00000047187	RatGTEx
	ENSRNOG00000066832	RatGTEx
UniProt	A0A8I5ZX02	ENTREZGENE, UniProtKB/TrEMBL
	A6JTJ3	ENTREZGENE, UniProtKB/TrEMBL
	Q6PCU1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Surf2	surfeit 2	LOC100912042	surfeit locus protein 2-like	Data merged from RGD:6489529	737654	PROVISIONAL
2012-07-05	LOC100912042	surfeit locus protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-10-23	Surf2	surfeit 2	Surf2	surfeit gene 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Surf2	surfeit gene 2	Surf2	surfeit 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Surf2	surfeit 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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