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Gene: Uqcc4 (ubiquinol-cytochrome c reductase complex assembly factor 4) Rattus norvegicus

Analyze

Symbol:

Uqcc4

Name:

ubiquinol-cytochrome c reductase complex assembly factor 4

RGD ID:

1565784

Description:

Predicted to be involved in mitochondrial respiratory chain complex III assembly. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Orthologous to human UQCC4 (ubiquinol-cytochrome c reductase complex assembly factor 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C10h16orf91; hypothetical protein LOC497874; LOC497874; RGD1565784; similar to human chromosome 16 open reading frame 91; uncharacterized protein LOC497874

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,706,720 - 14,708,022 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	14,706,709 - 14,708,555 (+)	Ensembl				GRCr8
mRatBN7.2	10	14,202,217 - 14,203,519 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	14,202,243 - 14,204,029 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	18,943,286 - 18,944,588 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,432,146 - 18,433,448 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,931,362 - 13,932,664 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,543,196 - 14,544,498 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,543,200 - 14,545,000 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	14,358,284 - 14,359,586 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	14,429,984 - 14,431,286 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	13,874,939 - 13,876,241 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

disulfiram (ISO)

doxorubicin (ISO)

endosulfan (EXP)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

p-toluidine (EXP)

sulindac (EXP)

temozolomide (ISO)

thioacetamide (EXP)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial respiratory chain complex III assembly (IBA,IEA,ISO)

respiratory electron transport chain (IEA)

Cellular Component

mitochondrial inner membrane (IBA,IEA,ISO)

mitochondrion (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:34800366

Genomics

Comparative Map Data

Uqcc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,706,720 - 14,708,022 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	14,706,709 - 14,708,555 (+)	Ensembl				GRCr8
mRatBN7.2	10	14,202,217 - 14,203,519 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	14,202,243 - 14,204,029 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	18,943,286 - 18,944,588 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,432,146 - 18,433,448 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,931,362 - 13,932,664 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,543,196 - 14,544,498 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,543,200 - 14,545,000 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	14,358,284 - 14,359,586 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	14,429,984 - 14,431,286 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	13,874,939 - 13,876,241 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

UQCC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	1,419,752 - 1,420,747 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	1,419,752 - 1,420,756 (-)	Ensembl			hg38	GRCh38
GRCh37	16	1,469,753 - 1,470,748 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	1,409,945 - 1,419,346 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	1,682,542 - 1,691,944 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	1,396,115 - 1,397,171 (-)	NCBI		HuRef
CHM1_1	16	1,469,680 - 1,470,736 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	1,434,364 - 1,435,359 (-)	NCBI		T2T-CHM13v2.0

Uqcc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	25,403,535 - 25,406,636 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	25,403,528 - 25,406,636 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	25,184,561 - 25,187,662 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	25,184,554 - 25,187,662 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	25,321,506 - 25,324,607 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	24,911,856 - 24,915,262 (+)	NCBI		MGSCv36	mm8
Celera	17	25,714,046 - 25,717,160 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.53	NCBI

LOC102009553
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,820,753 - 15,825,390 (+)	Ensembl
ChiLan1.0	NW_004955442	15,820,684 - 15,821,784 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100990880
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	1,681,724 - 1,683,312 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	5,469,079 - 5,470,678 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	39,543 - 41,134 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	1,474,158 - 1,475,205 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	1,474,158 - 1,475,201 (-)	Ensembl			panPan2	panpan1.1

UQCC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	39,372,695 - 39,375,081 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	39,373,227 - 39,373,821 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,641,272 - 40,643,057 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,719,554 - 39,721,339 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	39,719,638 - 39,721,294 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	39,396,529 - 39,398,314 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	39,368,997 - 39,370,783 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,847,422 - 39,849,208 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH16orf91
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,224,451 - 104,225,429 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	2,483,632 - 2,485,712 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	2,484,092 - 2,485,012 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UQCC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	40,440,051 - 40,441,281 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	40,439,419 - 40,441,209 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	42,082,443 - 42,083,457 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UQCC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	1,308,401 - 1,309,898 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	29,777,074 - 29,778,158 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH16orf91
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	2,118,207 - 2,119,306 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624913	2,117,412 - 2,119,350 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C9H16orf91
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	2,440,932 - 2,452,159 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Uqcc4
9 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	278
Count of miRNA genes:	212
Interacting mature miRNAs:	228
Transcripts:	ENSRNOT00000047111
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

RH139276

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	14,202,888 - 14,203,077 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	14,543,868 - 14,544,056	NCBI	Rnor6.0
Rnor_5.0	10	14,358,956 - 14,359,144	UniSTS	Rnor5.0
RGSC_v3.4	10	14,430,656 - 14,430,844	UniSTS	RGSC3.4
Celera	10	13,875,611 - 13,875,799	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000047111 ⟹ ENSRNOP00000040141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	14,706,709 - 14,708,555 (+)	Ensembl
mRatBN7.2 Ensembl	10	14,202,243 - 14,204,029 (+)	Ensembl
Rnor_6.0 Ensembl	10	14,543,200 - 14,545,000 (+)	Ensembl

RefSeq Acc Id:

NM_001109028 ⟹ NP_001102498

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,706,720 - 14,708,022 (+)	NCBI
mRatBN7.2	10	14,202,217 - 14,203,519 (+)	NCBI
Rnor_6.0	10	14,543,196 - 14,544,498 (+)	NCBI
Rnor_5.0	10	14,358,284 - 14,359,586 (+)	NCBI
RGSC_v3.4	10	14,429,984 - 14,431,286 (+)	RGD
Celera	10	13,874,939 - 13,876,241 (+)	RGD

Sequence:

show sequence

CGAAAGCCCTGAGCGCCGCAGTGTGCGAGTCGAGGTCGCTATGAACAGTGTCCTGTGCTCACGG
GCGGCGGGAGCGGTCAGGGCTCTGCGGCTCGTGGGCTGGACTTCCCGAAGCTTGCATCCGCCGC
CCCGTGACCGGTCTCCAGTTCAGTCTGCAGACAGGGAAGAGGAGGAGGAAGACCCCAACCTCCC
AATTCAATTTTCCGGCAGCAAAGCCACCCCAGTCCGCTGGACGGTGGAGCATTCCCTGGGGAAG
CAGCAGCAGCGGCCCTGGTGGAAAGTGCTGCCGTTCACCCTTCCCCTTGTGGTTCTGATCATTT
GGTGCTACCGGAGGGAGGAGAGCAGCACGGACCAGTGGTTGAGACAGATTTTGGAAGAGGAGGA
CGAGGAAGAGCCGGAAGGTCCTCTGGAGGAGCTTGAAGCTCCGGCCATCTACGGGGCTAGAACG
TAACAGGGTTCGTGCTGAGGAAGGGAGTAGGCAGCCATCCTTCTGTTTTGTCGTCAAATTTGAC
GATTTCTGAACTGGTTCTGCGCATGTCTTCGTTGCTTAAAGGACTTGGATGGCGCTCTTGTCGC
TGACACAACACAGCACAAAATTGGAGGCTCGAAATCTGATCTTTGCTCGACACCAATGTTCAGT
GATTACGTCCAAAGAACTTTTGAGGTTCATAGAAAAGGTTTCGGGTGCACCGTGTGCTGTTGAA
TTTGTGATGTGTTTGTACAGCCTAATTATGTTTCCCGAGGAGTTCTGGGGGAGATGTTACCTGC
GGTTTATTCGCTTTCTGAGACAGGCTAACTGCATAAGTGTACAGAGCTATGGTGTGTGCAACAT
CAGTTGAAGCTACTTTAAAAACTAACAAATGGAAAATACATTTGGTAAAGTCTAAAGAACTCAA
TTTTCTCCCCTTTCATCAAGTGGGTTTTGTTTTGTTTTGAGACACAGTCTCCCTAGATAGCTCT
GGCTGGCCTGGAACTGGTTATGTAGACCAGCCTTGCCTCAGACTTAAACATCAGCCTACTTCTG
CCGCCACATTTTTTTCTTCTGCTGCTCTTAATTCCCACTTGAGAACCTAGAAACTTGCCAGAAG
TGGTAGTGCATGCCCGTAGTCTCATCACTTAAGAGACTGAGGTAGGGGGATCCTAAGTTTGAGG
TCTGCCTGGGTTACATAGGGAGACCCTGTCCCAAAAAACAAAACAAAATCATTTTTCACCGACA
TAGTGGGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102498	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM03908	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040141
	ENSRNOP00000040141.3

RefSeq Acc Id:	NP_001102498 ⟸ NM_001109028
- UniProtKB:	D4ACY1 (UniProtKB/TrEMBL), A6HD03 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSVLCSRAAGAVRALRLVGWTSRSLHPPPRDRSPVQSADREEEEEDPNLPIQFSGSKATPVRW TVEHSLGKQQQRPWWKVLPFTLPLVVLIIWCYRREESSTDQWLRQILEEEDEEEPEGPLEELEA PAIYGART hide sequence

Ensembl Acc Id:

ENSRNOP00000040141 ⟸ ENSRNOT00000047111

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACY1-F1-model_v2	AlphaFold	D4ACY1	1-136	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697043

Promoter ID:

EPDNEW_R7568

Type:

multiple initiation site

Name:

RGD1565784_1

Description:

RGD1565784

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	14,543,215 - 14,543,275	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565784	AgrOrtholog
BioCyc Gene	G2FUF-25801	BioCyc
Ensembl Genes	ENSRNOG00000029415	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000047111	ENTREZGENE
	ENSRNOT00000047111.6	UniProtKB/TrEMBL
InterPro	CCSMST1	UniProtKB/TrEMBL
	CCSMST1_fam	UniProtKB/TrEMBL
KEGG Report	rno:497874	UniProtKB/TrEMBL
NCBI Gene	497874	ENTREZGENE
PANTHER	PROTEIN CCSMST1	UniProtKB/TrEMBL
	PTHR35268	UniProtKB/TrEMBL
Pfam	CCSMST1	UniProtKB/TrEMBL
PhenoGen	Uqcc4	PhenoGen
PRINTS	CCSMST1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029415	RatGTEx
UniProt	A6HD03	ENTREZGENE, UniProtKB/TrEMBL
	D4ACY1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-10-18	Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	C10h16orf91	similar to human chromosome 16 open reading frame 91	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2022-08-02	C10h16orf91	similar to human chromosome 16 open reading frame 91	RGD1565784	RGD1565784	Name and Symbol changed	629549	APPROVED
2008-04-30	RGD1565784	RGD1565784	RGD1565784_predicted	RGD1565784 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565784_predicted	RGD1565784 (predicted)	LOC497874	LOC497874	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC497874	LOC497874			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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