Sgpp2 (sphingosine-1-phosphate phosphatase 2) - Rat Genome Database

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Gene: Sgpp2 (sphingosine-1-phosphate phosphatase 2) Rattus norvegicus
Analyze
Symbol: Sgpp2
Name: sphingosine-1-phosphate phosphatase 2
RGD ID: 1565739
Description: Predicted to enable sphingosine-1-phosphate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; regulation of type B pancreatic cell proliferation; and sphingosine metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human SGPP2 (sphingosine-1-phosphate phosphatase 2); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 6-propyl-2-thiouracil; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC301543; RGD1565739; similar to Sphingosine-1-phosphate phosphotase 2; sphingosine-1-phosphate phosphotase 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,211,155 - 87,331,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl987,211,717 - 87,333,132 (+)EnsemblGRCr8
mRatBN7.2979,762,658 - 79,884,665 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl979,763,284 - 79,880,457 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx988,193,174 - 88,310,242 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0993,306,052 - 93,422,660 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0991,704,622 - 91,821,684 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0984,203,094 - 84,321,269 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,203,072 - 84,319,874 (+)Ensemblrn6Rnor6.0
Rnor_5.0983,961,688 - 84,075,946 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4977,679,320 - 77,799,178 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera977,274,290 - 77,388,812 (+)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diiodine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (EXP,ISO)
hesperidin  (EXP)
inulin  (ISO)
isobutanol  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
mercury dibromide  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
niclosamide  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propanal  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12411432   PMID:27059959  


Genomics

Comparative Map Data
Sgpp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,211,155 - 87,331,787 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl987,211,717 - 87,333,132 (+)EnsemblGRCr8
mRatBN7.2979,762,658 - 79,884,665 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl979,763,284 - 79,880,457 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx988,193,174 - 88,310,242 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0993,306,052 - 93,422,660 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0991,704,622 - 91,821,684 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0984,203,094 - 84,321,269 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,203,072 - 84,319,874 (+)Ensemblrn6Rnor6.0
Rnor_5.0983,961,688 - 84,075,946 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4977,679,320 - 77,799,178 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera977,274,290 - 77,388,812 (+)NCBICelera
Cytogenetic Map9q33NCBI
SGPP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,423,988 - 222,562,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,424,511 - 222,562,621 (+)Ensemblhg38GRCh38
GRCh372223,288,707 - 223,427,340 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,997,566 - 223,131,861 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342223,114,826 - 223,249,122NCBI
Celera2217,107,484 - 217,191,808 (+)NCBICelera
Cytogenetic Map2q36.1NCBI
HuRef2215,143,345 - 215,277,358 (+)NCBIHuRef
CHM1_12223,295,733 - 223,430,117 (+)NCBICHM1_1
T2T-CHM13v2.02222,909,191 - 223,047,956 (+)NCBIT2T-CHM13v2.0
Sgpp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,286,186 - 78,396,926 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,286,982 - 78,396,926 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38178,309,549 - 78,420,289 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,310,345 - 78,420,289 (+)Ensemblmm10GRCm38
MGSCv37178,306,921 - 78,416,861 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36178,193,492 - 78,303,436 (+)NCBIMGSCv36mm8
Celera178,786,483 - 78,890,682 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map140.23NCBI
Sgpp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545311,242,647 - 11,359,569 (-)Ensembl
ChiLan1.0NW_00495545311,244,077 - 11,361,990 (-)NCBIChiLan1.0ChiLan1.0
SGPP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213125,041,949 - 125,177,133 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B125,056,920 - 125,192,100 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B109,668,923 - 109,803,950 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B228,300,677 - 228,385,137 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B228,300,673 - 228,381,565 (+)EnsemblpanPan2panpan1.1
SGPP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13728,536,815 - 28,639,380 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3729,372,695 - 29,474,494 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03728,560,624 - 28,662,588 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3728,560,568 - 28,661,255 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13728,472,739 - 28,574,349 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03728,404,302 - 28,505,973 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03728,422,422 - 28,524,202 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sgpp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303178,063,326 - 178,174,545 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365694,406,253 - 4,518,655 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365694,405,804 - 4,518,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGPP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15124,318,955 - 124,462,851 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115124,316,309 - 124,462,855 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215137,863,888 - 137,960,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGPP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110108,339,433 - 108,480,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604090,897,357 - 91,035,535 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgpp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248232,638,257 - 2,756,448 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248232,635,128 - 2,756,566 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sgpp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14151,567,144 - 151,627,575 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sgpp2
507 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:20
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000018882
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)98672213292642305Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat

Markers in Region
D9Got91  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,842,579 - 79,842,704 (+)MAPPERmRatBN7.2
Rnor_6.0984,281,399 - 84,281,523NCBIRnor6.0
Rnor_5.0984,040,284 - 84,040,408UniSTSRnor5.0
RGSC_v3.4977,758,668 - 77,758,793RGDRGSC3.4
RGSC_v3.4977,758,669 - 77,758,793UniSTSRGSC3.4
Celera977,353,135 - 77,353,266UniSTS
RGSC_v3.1977,942,088 - 77,942,212RGD
RH 3.4 Map9730.1RGD
RH 3.4 Map9730.1UniSTS
RH 2.0 Map9819.2RGD
Cytogenetic Map9q33UniSTS
D9Mco89  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,833,676 - 79,833,926 (+)MAPPERmRatBN7.2
Rnor_6.0984,272,497 - 84,272,746NCBIRnor6.0
Rnor_5.0984,031,382 - 84,031,631UniSTSRnor5.0
RGSC_v3.4977,749,766 - 77,750,015UniSTSRGSC3.4
Celera977,344,239 - 77,344,488UniSTS
Cytogenetic Map9q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 62 151 91 90 59 81 59 6 340 176 11 125 81 88 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000018882   ⟹   ENSRNOP00000018882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl984,203,072 - 84,319,874 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102924   ⟹   ENSRNOP00000087628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl987,211,717 - 87,329,866 (+)Ensembl
mRatBN7.2 Ensembl979,763,284 - 79,880,457 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000146930   ⟹   ENSRNOP00000105259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl987,211,717 - 87,333,132 (+)Ensembl
RefSeq Acc Id: NM_001191811   ⟹   NP_001178740
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,211,864 - 87,328,926 (+)NCBI
mRatBN7.2979,763,394 - 79,880,457 (+)NCBI
Rnor_6.0984,203,094 - 84,317,061 (+)NCBI
Rnor_5.0983,961,688 - 84,075,946 (+)NCBI
Celera977,274,290 - 77,388,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083380   ⟹   XP_038939308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,211,155 - 87,331,787 (+)NCBI
mRatBN7.2979,762,658 - 79,884,665 (+)NCBI
RefSeq Acc Id: XM_039083381   ⟹   XP_038939309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,244,490 - 87,331,787 (+)NCBI
mRatBN7.2979,795,984 - 79,884,665 (+)NCBI
RefSeq Acc Id: XM_039083382   ⟹   XP_038939310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,211,650 - 87,301,311 (+)NCBI
mRatBN7.2979,763,192 - 79,853,934 (+)NCBI
RefSeq Acc Id: XM_063266995   ⟹   XP_063123065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,211,648 - 87,328,448 (+)NCBI
RefSeq Acc Id: NP_001178740   ⟸   NM_001191811
- UniProtKB: A0A8I6AGX4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018882   ⟸   ENSRNOT00000018882
RefSeq Acc Id: XP_038939308   ⟸   XM_039083380
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939310   ⟸   XM_039083382
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939309   ⟸   XM_039083381
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000087628   ⟸   ENSRNOT00000102924
RefSeq Acc Id: XP_063123065   ⟸   XM_063266995
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000105259   ⟸   ENSRNOT00000146930

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LZ44-F1-model_v2 AlphaFold F1LZ44 1-354 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696787
Promoter ID:EPDNEW_R7311
Type:initiation region
Name:Sgpp2_1
Description:sphingosine-1-phosphate phosphatase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0984,203,004 - 84,203,064EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565739 AgrOrtholog
BioCyc Gene G2FUF-27025 BioCyc
BioCyc Pathway PWY3DJ-11470 [sphingosine and sphingosine-1-phosphate metabolism] BioCyc
BioCyc Pathway Image PWY3DJ-11470 BioCyc
Ensembl Genes ENSRNOG00000037695 Ensembl
  ENSRNOG00000069992 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000102924.2 UniProtKB/TrEMBL
  ENSRNOT00000146930 ENTREZGENE
  ENSRNOT00000146930.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidic acid phosphatase type 2/haloperoxidase UniProtKB/TrEMBL
InterPro P_Acid_Pase_2/haloperoxi_sf UniProtKB/TrEMBL
  P_Acid_Pase_2/haloperoxidase UniProtKB/TrEMBL
KEGG Report rno:301543 UniProtKB/TrEMBL
NCBI Gene 301543 ENTREZGENE
PANTHER SPHINGOSINE-1-PHOSPHATE PHOSPHATASE 2 UniProtKB/TrEMBL
  SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE UniProtKB/TrEMBL
Pfam PAP2 UniProtKB/TrEMBL
PhenoGen Sgpp2 PhenoGen
RatGTEx ENSRNOG00000037695 RatGTEx
  ENSRNOG00000069992 RatGTEx
SMART acidPPc UniProtKB/TrEMBL
Superfamily-SCOP SSF48317 UniProtKB/TrEMBL
UniProt A0A8I6AGX4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LUJ0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Sgpp2  sphingosine-1-phosphate phosphatase 2  Sgpp2  sphingosine-1-phosphate phosphotase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sgpp2  sphingosine-1-phosphate phosphotase 2  RGD1565739_predicted  similar to Sphingosine-1-phosphate phosphotase 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565739_predicted  similar to Sphingosine-1-phosphate phosphotase 2 (predicted)  LOC301543  similar to Sphingosine-1-phosphate phosphotase 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC301543  similar to Sphingosine-1-phosphate phosphotase 2      Symbol and Name status set to provisional 70820 PROVISIONAL