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Gene: Lrrc9 (leucine rich repeat containing 9) Rattus norvegicus

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Symbol:

Lrrc9

Name:

leucine rich repeat containing 9

RGD ID:

1565716

Description:

Predicted to be located in cytoplasm. Orthologous to human LRRC9 (leucine rich repeat containing 9); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; copper atom.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

leucine-rich repeat-containing protein 9; LOC299129; RGD1565716; similar to RIKEN cDNA 4921529O18

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LRRC9 (leucine rich repeat containing 9)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Lrrc9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LRRC9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LRRC9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lrrc9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LRRC9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LRRC9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lrrc9 (leucine rich repeat containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Lrrc9 (leucine rich repeat containing 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LRRC9 (leucine rich repeat containing 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lrrc9 (leucine rich repeat containing 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lrrc9 (leucine rich repeat containing 9)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T05H4.3	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	T05H4.3	Alliance	DIOPT (OMA\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lrrc9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	96,746,972 - 96,831,840 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	96,761,246 - 96,845,259 (+)	Ensembl				GRCr8
mRatBN7.2	6	91,017,739 - 91,095,847 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	91,017,736 - 91,100,237 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	91,395,998 - 91,454,907 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	91,695,458 - 91,754,369 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	91,123,408 - 91,182,324 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	95,205,131 - 95,290,848 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	95,205,153 - 95,285,893 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	104,642,902 - 104,727,642 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	94,737,480 - 94,799,457 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	89,487,325 - 89,546,059 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

6-propyl-2-thiouracil (EXP)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

epoxiconazole (ISO)

ethanol (ISO)

kojic acid (ISO)

nitrofen (EXP)

ozone (EXP)

paracetamol (ISO)

potassium dichromate (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Lrrc9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	96,746,972 - 96,831,840 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	96,761,246 - 96,845,259 (+)	Ensembl				GRCr8
mRatBN7.2	6	91,017,739 - 91,095,847 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	91,017,736 - 91,100,237 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	91,395,998 - 91,454,907 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	91,695,458 - 91,754,369 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	91,123,408 - 91,182,324 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	95,205,131 - 95,290,848 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	95,205,153 - 95,285,893 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	104,642,902 - 104,727,642 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	94,737,480 - 94,799,457 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	89,487,325 - 89,546,059 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

LRRC9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	59,919,713 - 60,066,817 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	59,919,713 - 60,066,817 (+)	Ensembl			hg38	GRCh38
GRCh37	14	60,386,431 - 60,533,535 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	59,456,620 - 59,599,833 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	40,435,670 - 40,579,626 (+)	NCBI		Celera
Cytogenetic Map	14	q23.1	NCBI
HuRef	14	40,549,877 - 40,693,769 (+)	NCBI		HuRef
CHM1_1	14	60,325,689 - 60,469,556 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	54,125,062 - 54,272,758 (+)	NCBI		T2T-CHM13v2.0

Lrrc9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	72,481,391 - 72,561,269 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	72,488,640 - 72,577,524 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	72,434,617 - 72,517,913 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	72,441,866 - 72,530,750 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	73,542,853 - 73,611,552 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	73,360,771 - 73,416,077 (+)	NCBI		MGSCv36	mm8
Celera	12	73,557,281 - 73,625,977 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	30.2	NCBI

LRRC9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	61,051,111 - 61,202,324 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	60,267,625 - 60,418,838 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	40,521,523 - 40,670,672 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	58,785,493 - 58,932,918 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	58,785,493 - 58,932,770 (+)	Ensembl			panPan2	panpan1.1

LRRC9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	35,060,998 - 35,180,457 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	35,070,326 - 35,183,059 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	34,815,164 - 34,972,710 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	35,293,998 - 35,451,701 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	35,294,313 - 35,415,410 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	34,906,677 - 35,064,091 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	34,982,133 - 35,140,804 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	35,343,089 - 35,500,967 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lrrc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	69,900,796 - 69,987,448 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	4,211,172 - 4,286,904 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	4,211,395 - 4,290,406 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	188,966,688 - 189,081,731 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	188,966,569 - 189,081,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	210,042,874 - 210,141,699 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	37,137,179 - 37,285,073 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	37,145,492 - 37,283,543 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	25,382,941 - 25,528,961 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	86,504,628 - 86,577,599 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lrrc9
611 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	11
Count of miRNA genes:	10
Interacting mature miRNAs:	11
Transcripts:	ENSRNOT00000007339
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
4889933	Bss88	Bone structure and strength QTL 88	3.8		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	6	53684921	98684921	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
5684963	Bss99	Bone structure and strength QTL 99	3.1		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	6	53684921	98684921	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
5684992	Bmd83	Bone mineral density QTL 82	4.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	6	53684921	98684921	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	4	62	147	65	66	35	21	35	6	204	102	1	130	54	86	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005505472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005505473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005505474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007339 ⟹ ENSRNOP00000007339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	96,761,246 - 96,835,989 (+)	Ensembl
mRatBN7.2 Ensembl	6	91,017,736 - 91,100,237 (+)	Ensembl
Rnor_6.0 Ensembl	6	95,205,153 - 95,285,893 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138925 ⟹ ENSRNOP00000108393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	96,761,246 - 96,845,259 (+)	Ensembl

RefSeq Acc Id:

NM_001191613 ⟹ NP_001178542

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	96,761,279 - 96,820,399 (+)	NCBI
mRatBN7.2	6	91,025,377 - 91,084,501 (+)	NCBI
Rnor_6.0	6	95,219,523 - 95,274,366 (+)	NCBI
Rnor_5.0	6	104,642,902 - 104,727,642 (+)	NCBI
Celera	6	89,487,325 - 89,546,059 (+)	NCBI

Sequence:

show sequence

ATGATTGAAAGTGAACACTTTAATCGAGGTGAAATCATTAAAGAACTGTGTTTGTGCAATGGTT
TATCTTATGAGATGGTTGGACAAGAAGGATCAGATACTTCAAAACTGGAGATGTTCTTTTCAGG
GTATCCCCGAATAGTTGGATTATCACTGTTTCATAATTTATCAAGTCTTACAATTGTTGCTCAA
GATATAAAGGAAATTTCAGGGCTAGAGACTTGCTTACGGCTTAAGGAACTTTGGATTGCTGAGT
GCTGCATAGAGAAAATTGAAGGCCTTCACGGATGTAGAAATTTGGAAAAATTATATTTATATTA
CAATAAAATTTCCAAAATAGAAAATTTAGAGAAGTTAATAAAATTGGAAGTTCTGTGGCTGAAC
CACAACACGATAAGAAATATTGAGGGCTTGCAGACTTTGAAGAATCTAAAAGACCTCAACCTTG
CGGGGAACCTAATAAGCAGCATTGGTCGATGTCTCGATCCCAATGAACAACTGGAAAAACTAAA
CCTTTCTGGAAATCAAATTACTTCTTTCAAGGACCTTACTAACTTGACCAAGCTCCCTCGCTTA
AAGGATTTATCTCTGAATGACCCTCAGTATAAATCAAATCCAGTGTGTCAGCTGTGTAACTACT
CCACCCACGTGTTGTATCACCTGCCTTCTCTTCAACGACTTGACACGTTTGACGTATCAGCAAA
GCAAATCAAGGAGCTGGCAGATTCAACAGCAATGAAAAAAATAATGTATTATAACATGAGAATA
AAAACTGTTCAGAGACATCTGAATGAAGAACTTGAAAAACTGAATGACAGGAAATGCAAGTTAC
AGAAGCTACCGGAAGAACGGATAAAATTATTCAACTTTGCAAAGAAAACATTAGAACGGGAACT
GGCTGAACTCAAGATCTCTGGCAAAGGGCAGAGTGATACTGCACCAGAGGCCGAGAAAGCCCGG
AATAGTGAGACTCTCACACAGGAATCGGTTCTGCAGCAGAAGATACTGACCAAGCTGAATGCCC
TGGACGACAGAGTCATGTTCTGGAACAAGAAGCTACATGAAATTGAAGCAATTTATCGTACTGA
AGTAAAACAGAAGAAGAAGAGCCATGGCTTACTGACCCCATTTCTGCTCACGGAGCTGGAGACC
GTGGGGAACATCCATTTTGAGGAAGGCACTCGAGCTGATGAATGGTTTAATTCCTGCTATGAAC
TAATTCTCTCACGTTTCTGCACCTGGGACTTCAGAGCATACGGCATCACAGGGGTGAAAGTCAA
GCGTGTCATTAAAGTCAACAACCGTATTCTGAGACTGAGATTTGAAGAGAAATTCCAAAAGTGT
TTGGATCTAGAGGACATACAAGATTCAGAGAGCTATCGAAAGATGCTGGAATGCCTCTTCTACG
TCTTTGATCCTGAAGTGACAGTAAAGAAAAAGCATCTGCTACAAATACTTGAGAGGGGATTCAA
AGACAGCGACACAAGCAAGCCCCCTCTTAGAAAGGAAGCTGTTACCCTTGTGAACAGCCTCAGT
ATGTGTGAGTGCCCCCGAATCGAGTTCCTCCAGCAGAAGTATAAAGAGGAGAAGAAAAGCCCAT
CAGAGAGCGACCTCTACAGACACGGCACCATCCTCATTGCGAAGGTTTTTCTTGGCCAGAGTAT
TCAGGCTCGTGACCAGGAACCCATCAGTAAAGCCAACTACCCCATGGTTAACTCGGTGTTTGTT
CCTCAGAGACACATGCTAAGACAAAGAACTTGTGATTGTGGATATCGGCAGTACAAATGGTTTG
TCTTTGACCACGACCTGGTTTTGCCAGAGTACATCGTTGAGTTTGAGTATACTACAGTGGTCAA
AGTCCACTCTTTATTTTCCACATTAAACAATGTTATTCTAGAAGAAGGCAAAAAGTATTCTGAA
GGATTAGTATTCTCGCAGGATTTGAAGTTTGACGATGAAGTTCTGAAGATGGAGCCCAGGATTA
AGCCCCGCCCAAAACTCATTAGTTTGGATGAGAAGACAATAATTTCCCTTGCTAGGACTAATAT
TTATAGCCATATTGTGAATCTGAATCTACATGGGAATAGCTTGAGTAAACTGAGAGATCTTTCC
AAGTTAACTGGGCTTCGAAAACTGAACATTAGCTTTAACGAGTTTACTTGCTTAGATGATGTCT
ACCACTTGTACAACCTAGAGTATCTGGACGCCAGCCATAACCATGTGATAACCCTGGAGGGCTT
CCGAGGCCTGATGAAGCTGAAGCATTTAGACTTGAGCTGGAATCAGCTCAAGAAGACAGGCGAA
GAGATCAACGTGCTGTGCAAACACACCACCAGCCTCCTCACCCTGGACATCCAGCACAACCCCT
GGCAGAAGCCAGCCACATTGAGGCTGAGTGTTATTGGCAGACTAAAGACTCTTACGCACTTAGA
CGGACTCCTCATCTCTGAAGAAGAAACCAGAGCAGCTCTGAAATTCATTAGTGGAACAAAGATT
ACTCAGTTAACTCTCTTACAGCATTCTAGCTCTAAAGAGGAAAGACCTCGGATGCTCAGTATAT
GGCCTTCTGCCAAAATTCTGACCCAGATTTCAAAGTTAGGACCCCACTTTCATCTGACTGGGAA
CTGGTACTTGAAGATAACTGCCTTAAATTTAGATGGACAACATCTCTTTGAAATCACAAATCTA
GAAAAATTGGAGAATTTGAAATGGGCATCGTTCAGCAATAATAACCTCTCCAAAATGGAAGGCC
TTGAGTCCTGTGTCAACCTGGAGGAGCTCACATTAGATGGCAACTGCATCTCAAAGATAGAAGG
CATCACCAGGCTGACCAAACTAAGCCGCCTCAGCATGAACAACAACCTTCTCACCGGCCTGGAG
AAGCACACGTTTGATAACATGCTTCATCTCCACTCCCTCTCTCTCGAGAACAACAGGATCACAT
CACTGAGCGCTTTACAAAAGACATTCACTCTGATCGAGTTGTACATAAGCAATAACTACATAGC
CGTGAACCAAGAGATCTACAACTTAAAGGGTTTATGCAACTTGGTCATTCTAGACATGTATGGA
AACATTATTATATGGAACCAAGAAAACTACCGGCTGTTTGTAATATTTCATCTTTCTGAACTGA
AGGCCTTGGATGGAATGTCAATTGAACCATCAGAGACTGAGAATGCAAAAGATTTGTTTGGTGG
TCGTCTCACCTCTGACATGATTGCTGAACGACAAGGACACTCAAACTTTGTCCAAATGCAAGAG
CTAAACTGGACCTCCTCATCCATCAGGACTGTGGATCTGATTCCTGTTGACCACTTCAGGAATG
TGAGCAATGTGAATCTCCAGAACAACAACCTCACGTCATTCAGTGGCCTCATCTACCTGCCCAA
TGTGAAGGCACGTGGCTGCCGAGCCATATTTGCCCTCAAAGACTTCAGCACAAGTTTTAATCTT
CATTTACATTAAACTGTATTCCTTATTAA

hide sequence

RefSeq Acc Id:

XM_039111997 ⟹ XP_038967925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	96,753,646 - 96,820,399 (+)	NCBI
mRatBN7.2	6	91,017,740 - 91,084,501 (+)	NCBI

RefSeq Acc Id:

XM_063261711 ⟹ XP_063117781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	96,746,972 - 96,820,399 (+)	NCBI

RefSeq Acc Id:

XR_005505472

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	96,753,647 - 96,831,840 (+)	NCBI
mRatBN7.2	6	91,017,739 - 91,095,847 (+)	NCBI

RefSeq Acc Id:

XR_005505473

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	96,753,647 - 96,797,176 (+)	NCBI
mRatBN7.2	6	91,017,740 - 91,061,276 (+)	NCBI

RefSeq Acc Id:

XR_005505474

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	96,753,646 - 96,793,888 (+)	NCBI
mRatBN7.2	6	91,017,739 - 91,057,988 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178542	(Get FASTA)	NCBI Sequence Viewer
	XP_038967925	(Get FASTA)	NCBI Sequence Viewer
	XP_063117781	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM03591	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007339.7
	ENSRNOP00000108393.1

RefSeq Acc Id:

NP_001178542 ⟸ NM_001191613

- UniProtKB:

A6HC36 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQ
DIKEISGLETCLRLKELWIAECCIEKIEGLHGCRNLEKLYLYYNKISKIENLEKLIKLEVLWLN
HNTIRNIEGLQTLKNLKDLNLAGNLISSIGRCLDPNEQLEKLNLSGNQITSFKDLTNLTKLPRL
KDLSLNDPQYKSNPVCQLCNYSTHVLYHLPSLQRLDTFDVSAKQIKELADSTAMKKIMYYNMRI
KTVQRHLNEELEKLNDRKCKLQKLPEERIKLFNFAKKTLERELAELKISGKGQSDTAPEAEKAR
NSETLTQESVLQQKILTKLNALDDRVMFWNKKLHEIEAIYRTEVKQKKKSHGLLTPFLLTELET
VGNIHFEEGTRADEWFNSCYELILSRFCTWDFRAYGITGVKVKRVIKVNNRILRLRFEEKFQKC
LDLEDIQDSESYRKMLECLFYVFDPEVTVKKKHLLQILERGFKDSDTSKPPLRKEAVTLVNSLS
MCECPRIEFLQQKYKEEKKSPSESDLYRHGTILIAKVFLGQSIQARDQEPISKANYPMVNSVFV
PQRHMLRQRTCDCGYRQYKWFVFDHDLVLPEYIVEFEYTTVVKVHSLFSTLNNVILEEGKKYSE
GLVFSQDLKFDDEVLKMEPRIKPRPKLISLDEKTIISLARTNIYSHIVNLNLHGNSLSKLRDLS
KLTGLRKLNISFNEFTCLDDVYHLYNLEYLDASHNHVITLEGFRGLMKLKHLDLSWNQLKKTGE
EINVLCKHTTSLLTLDIQHNPWQKPATLRLSVIGRLKTLTHLDGLLISEEETRAALKFISGTKI
TQLTLLQHSSSKEERPRMLSIWPSAKILTQISKLGPHFHLTGNWYLKITALNLDGQHLFEITNL
EKLENLKWASFSNNNLSKMEGLESCVNLEELTLDGNCISKIEGITRLTKLSRLSMNNNLLTGLE
KHTFDNMLHLHSLSLENNRITSLSALQKTFTLIELYISNNYIAVNQEIYNLKGLCNLVILDMYG
NIIIWNQENYRLFVIFHLSELKALDGMSIEPSETENAKDLFGGRLTSDMIAERQGHSNFVQMQE
LNWTSSSIRTVDLIPVDHFRNVSNVNLQNNNLTSFSGLIYLPNVKARGCRAIFALKDFSTSFNL
HLH

hide sequence

Ensembl Acc Id:

ENSRNOP00000007339 ⟸ ENSRNOT00000007339

RefSeq Acc Id:	XP_038967925 ⟸ XM_039111997
- Peptide Label:	isoform X1
- UniProtKB:	A6HC36 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117781 ⟸ XM_063261711
- Peptide Label:	isoform X1
- UniProtKB:	A6HC36 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108393 ⟸ ENSRNOT00000138925

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAU7-F1-model_v2	AlphaFold	D4AAU7	1-1377	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694657

Promoter ID:

EPDNEW_R5181

Type:

single initiation site

Name:

Lrrc9_1

Description:

leucine rich repeat containing 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	95,205,198 - 95,205,258	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565716	AgrOrtholog
BioCyc Gene	G2FUF-37149	BioCyc
Ensembl Genes	ENSRNOG00000005409	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007339	ENTREZGENE
	ENSRNOT00000007339.9	UniProtKB/TrEMBL
	ENSRNOT00000138925.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_4	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	SDS22/Internalin_LRR	UniProtKB/TrEMBL
NCBI Gene	299129	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED	UniProtKB/TrEMBL
	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9	UniProtKB/TrEMBL
Pfam	LRR_4	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
	LRR_9	UniProtKB/TrEMBL
PhenoGen	Lrrc9	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005409	RatGTEx
SMART	LRR_BAC	UniProtKB/TrEMBL
	LRR_SD22	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	Outer arm dynein light chain 1	UniProtKB/TrEMBL
UniProt	A0ABK0LCM6_RAT	UniProtKB/TrEMBL
	A6HC36	ENTREZGENE, UniProtKB/TrEMBL
	D4AAU7_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Lrrc9	leucine rich repeat containing 9	RGD1565716_predicted	similar to RIKEN cDNA 4921529O18 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565716_predicted	similar to RIKEN cDNA 4921529O18 (predicted)	LOC299129	similar to RIKEN cDNA 4921529O18	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC299129	similar to RIKEN cDNA 4921529O18			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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