Esyt2 (extended synaptotagmin 2) - Rat Genome Database

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Gene: Esyt2 (extended synaptotagmin 2) Rattus norvegicus
Analyze
Symbol: Esyt2
Name: extended synaptotagmin 2
RGD ID: 1565705
Description: Predicted to enable calcium ion binding activity; identical protein binding activity; and phospholipid binding activity. Predicted to be involved in endocytosis; endoplasmic reticulum-plasma membrane tethering; and lipid transport. Predicted to be located in cytoplasmic side of plasma membrane and endoplasmic reticulum-plasma membrane contact site. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ESYT2 (extended synaptotagmin 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: extended synaptotagmin protein 2; extended synaptotagmin-2; extended synaptotagmin-like protein 2; LOC102549308; LOC299488; RGD1565705; similar to chr2 synaptotagmin; uncharacterized LOC102549308
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,359,870 - 143,455,600 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6143,362,694 - 143,455,593 (+)EnsemblGRCr8
mRatBN7.26137,219,653 - 137,312,590 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,219,707 - 137,312,590 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6140,655,026 - 140,747,900 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06137,279,460 - 137,372,479 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06137,827,394 - 137,920,275 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06144,156,021 - 144,248,374 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,156,175 - 144,245,545 (+)Ensemblrn6Rnor6.0
Rnor_5.06153,092,679 - 153,184,797 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46143,566,626 - 143,657,881 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6134,884,876 - 134,977,669 (+)NCBICelera
Cytogenetic Map6q33NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17360437   PMID:19893752   PMID:19946888   PMID:22206666   PMID:23791178   PMID:24373768   PMID:24847877   PMID:25468996   PMID:27044890   PMID:30220461   PMID:33450132  


Genomics

Comparative Map Data
Esyt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,359,870 - 143,455,600 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6143,362,694 - 143,455,593 (+)EnsemblGRCr8
mRatBN7.26137,219,653 - 137,312,590 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,219,707 - 137,312,590 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6140,655,026 - 140,747,900 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06137,279,460 - 137,372,479 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06137,827,394 - 137,920,275 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06144,156,021 - 144,248,374 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,156,175 - 144,245,545 (+)Ensemblrn6Rnor6.0
Rnor_5.06153,092,679 - 153,184,797 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46143,566,626 - 143,657,881 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6134,884,876 - 134,977,669 (+)NCBICelera
Cytogenetic Map6q33NCBI
ESYT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387158,730,997 - 158,829,509 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7158,730,995 - 158,830,253 (-)Ensemblhg38GRCh38
GRCh377158,523,688 - 158,622,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367158,216,450 - 158,315,080 (-)NCBIBuild 36Build 36hg18NCBI36
Celera7152,956,246 - 153,054,446 (-)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7152,262,280 - 152,361,043 (-)NCBIHuRef
CHM1_17158,532,008 - 158,630,482 (-)NCBICHM1_1
T2T-CHM13v2.07159,954,852 - 160,053,446 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27157,728,008 - 157,826,023 (-)NCBI
Esyt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912116,242,903 - 116,354,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12116,244,816 - 116,354,670 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812116,279,283 - 116,390,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12116,281,196 - 116,391,050 (+)Ensemblmm10GRCm38
MGSCv3712117,519,695 - 117,611,571 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612110,482,451 - 110,573,901 (+)NCBIMGSCv36mm8
MGSCv3612116,723,231 - 116,815,107 (+)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1262.65NCBI
Esyt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955579971,653 - 1,022,661 (-)Ensembl
ChiLan1.0NW_004955579971,556 - 1,052,575 (-)NCBIChiLan1.0ChiLan1.0
ESYT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26195,225,524 - 195,323,926 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1747,235,790 - 47,334,166 (-)NCBINHGRI_mPanPan1
PanPan1.17162,006,323 - 162,102,994 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7162,009,537 - 162,104,844 (-)EnsemblpanPan2panpan1.1
ESYT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11620,719,115 - 20,802,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1620,718,499 - 20,811,468 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1621,223,940 - 21,305,821 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01622,450,105 - 22,533,819 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1622,450,113 - 22,542,245 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11620,817,634 - 20,899,737 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01621,401,967 - 21,484,081 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01621,456,093 - 21,538,247 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Esyt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118567,316 - 627,505 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936856641,138 - 695,188 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936856641,863 - 702,152 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESYT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18565,145 - 643,307 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.118565,137 - 643,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.218801,262 - 864,983 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ESYT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121126,757,748 - 126,792,986 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21126,754,260 - 126,793,320 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607223,156,031 - 23,214,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Esyt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624800310,275 - 411,660 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624800310,362 - 413,636 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Esyt2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17119,686,542 - 119,780,712 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:20
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000006582
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
RH134571  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,312,302 - 137,312,484 (+)MAPPERmRatBN7.2
Rnor_6.06144,248,087 - 144,248,268NCBIRnor6.0
Rnor_5.06153,184,510 - 153,184,691UniSTSRnor5.0
RGSC_v3.46143,659,861 - 143,660,042UniSTSRGSC3.4
Celera6134,977,382 - 134,977,563UniSTS
RH 3.4 Map6919.9UniSTS
Cytogenetic Map6q33UniSTS
AI229438  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,311,731 - 137,311,948 (+)MAPPERmRatBN7.2
Rnor_6.06144,247,516 - 144,247,732NCBIRnor6.0
Rnor_5.06153,183,939 - 153,184,155UniSTSRnor5.0
RGSC_v3.46143,659,290 - 143,659,506UniSTSRGSC3.4
Celera6134,976,811 - 134,977,027UniSTS
RH 3.4 Map6919.0UniSTS
Cytogenetic Map6q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002726849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006582   ⟹   ENSRNOP00000006582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,362,716 - 143,455,593 (+)Ensembl
mRatBN7.2 Ensembl6137,219,707 - 137,312,590 (+)Ensembl
Rnor_6.0 Ensembl6144,156,175 - 144,245,545 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117706   ⟹   ENSRNOP00000086527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,362,694 - 143,455,592 (+)Ensembl
mRatBN7.2 Ensembl6137,219,707 - 137,312,590 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000125844   ⟹   ENSRNOP00000111452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,362,716 - 143,455,592 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139772   ⟹   ENSRNOP00000109126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,362,722 - 143,455,593 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145580   ⟹   ENSRNOP00000099023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,362,694 - 143,455,592 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159360   ⟹   ENSRNOP00000099847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,362,716 - 143,455,593 (+)Ensembl
RefSeq Acc Id: NM_001271169   ⟹   NP_001258098
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,362,724 - 143,455,600 (+)NCBI
mRatBN7.26137,219,707 - 137,312,590 (+)NCBI
RefSeq Acc Id: XM_039112112   ⟹   XP_038968040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
mRatBN7.26137,219,657 - 137,312,584 (+)NCBI
RefSeq Acc Id: XM_039112113   ⟹   XP_038968041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
mRatBN7.26137,219,657 - 137,312,584 (+)NCBI
RefSeq Acc Id: XM_039112114   ⟹   XP_038968042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
mRatBN7.26137,219,657 - 137,312,584 (+)NCBI
RefSeq Acc Id: XM_039112119   ⟹   XP_038968047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,441,061 (+)NCBI
mRatBN7.26137,219,653 - 137,298,051 (+)NCBI
RefSeq Acc Id: XM_039112120   ⟹   XP_038968048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,441,061 (+)NCBI
mRatBN7.26137,219,654 - 137,298,051 (+)NCBI
RefSeq Acc Id: XM_063261796   ⟹   XP_063117866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
RefSeq Acc Id: XM_063261797   ⟹   XP_063117867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
RefSeq Acc Id: XM_063261798   ⟹   XP_063117868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
RefSeq Acc Id: XM_063261799   ⟹   XP_063117869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,359,870 - 143,455,594 (+)NCBI
RefSeq Acc Id: XM_063261800   ⟹   XP_063117870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,362,732 - 143,455,594 (+)NCBI
RefSeq Acc Id: XM_063261801   ⟹   XP_063117871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,404,374 - 143,455,594 (+)NCBI
Ensembl Acc Id: ENSRNOP00000006582   ⟸   ENSRNOT00000006582
RefSeq Acc Id: XP_038968047   ⟸   XM_039112119
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038968048   ⟸   XM_039112120
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038968040   ⟸   XM_039112112
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968041   ⟸   XM_039112113
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038968042   ⟸   XM_039112114
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A660 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001258098   ⟸   NM_001271169
- UniProtKB: D3ZJ32 (UniProtKB/TrEMBL),   A6KDL4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086527   ⟸   ENSRNOT00000117706
RefSeq Acc Id: XP_063117866   ⟸   XM_063261796
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117867   ⟸   XM_063261797
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117868   ⟸   XM_063261798
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117869   ⟸   XM_063261799
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063117870   ⟸   XM_063261800
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063117871   ⟸   XM_063261801
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000109126   ⟸   ENSRNOT00000139772
Ensembl Acc Id: ENSRNOP00000099023   ⟸   ENSRNOT00000145580
Ensembl Acc Id: ENSRNOP00000111452   ⟸   ENSRNOT00000125844
Ensembl Acc Id: ENSRNOP00000099847   ⟸   ENSRNOT00000159360
Protein Domains
C2   SMP-LTD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJ32-F1-model_v2 AlphaFold D3ZJ32 1-845 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694909
Promoter ID:EPDNEW_R5432
Type:initiation region
Name:Esyt2_1
Description:extended synaptotagmin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06144,156,083 - 144,156,143EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565705 AgrOrtholog
BioCyc Gene G2FUF-35513 BioCyc
Ensembl Genes ENSRNOG00000032391 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006582 ENTREZGENE
  ENSRNOT00000006582.9 UniProtKB/TrEMBL
  ENSRNOT00000117706 ENTREZGENE
  ENSRNOT00000117706.2 UniProtKB/TrEMBL
  ENSRNOT00000125844.1 UniProtKB/TrEMBL
  ENSRNOT00000139772 ENTREZGENE
  ENSRNOT00000139772.1 UniProtKB/TrEMBL
  ENSRNOT00000145580 ENTREZGENE
  ENSRNOT00000145580.1 UniProtKB/TrEMBL
  ENSRNOT00000159360.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2C_KIAA1228 UniProtKB/TrEMBL
  Ext_Synaptotagmin_C2A UniProtKB/TrEMBL
  Ext_Synaptotagmin_C2B UniProtKB/TrEMBL
  Extended_Synaptotagmin UniProtKB/TrEMBL
  SMP_LBD UniProtKB/TrEMBL
  Synaptotagmin_SMP UniProtKB/TrEMBL
NCBI Gene 299488 ENTREZGENE
PANTHER EXTENDED SYNAPTOTAGMIN-2 UniProtKB/TrEMBL
  EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
  SMP_LBD UniProtKB/TrEMBL
PhenoGen Esyt2 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
  SMP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032391 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A8I6A660 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L6B6_RAT UniProtKB/TrEMBL
  A0ABK0L8J3_RAT UniProtKB/TrEMBL
  A0ABK0LKG4_RAT UniProtKB/TrEMBL
  A0ABK0LUM0_RAT UniProtKB/TrEMBL
  A6KDL4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJ32 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Esyt2  extended synaptotagmin 2  LOC102549308  uncharacterized LOC102549308  Data merged from RGD:7562036 737654 PROVISIONAL
2016-06-22 Esyt2  extended synaptotagmin 2  Esyt2  extended synaptotagmin protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-15 Esyt2  extended synaptotagmin protein 2  Esyt2  extended synaptotagmin-like protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-17 LOC102549308  uncharacterized LOC102549308      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-10-12 Esyt2  extended synaptotagmin-like protein 2  RGD1565705  similar to chr2 synaptotagmin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565705  similar to chr2 synaptotagmin   RGD1565705_predicted  similar to chr2 synaptotagmin (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565705_predicted  similar to chr2 synaptotagmin (predicted)  LOC299488  similar to chr2 synaptotagmin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC299488  similar to chr2 synaptotagmin      Symbol and Name status set to provisional 70820 PROVISIONAL