Cxhxorf38 (similar to human chromosome X open reading frame 38) - Rat Genome Database

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Gene: Cxhxorf38 (similar to human chromosome X open reading frame 38) Rattus norvegicus
Analyze
Symbol: Cxhxorf38
Name: similar to human chromosome X open reading frame 38
RGD ID: 1565685
Description: Orthologous to human CXorf38 (chromosome X open reading frame 38); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC317344; LOC317344; RGD1565685; similar to RIKEN cDNA 1810030O07; uncharacterized protein CXorf38 homolog; uncharacterized protein LOC317344
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,800,935 - 12,823,632 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX12,802,377 - 12,814,198 (+)EnsemblGRCr8
mRatBN7.2X10,128,070 - 10,150,904 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX10,129,657 - 10,150,900 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX10,311,146 - 10,332,257 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,808,307 - 13,829,420 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X10,077,428 - 10,098,584 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X11,082,668 - 11,105,588 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX11,084,317 - 11,105,588 (+)Ensemblrn6Rnor6.0
Rnor_5.0X11,881,213 - 11,904,145 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X22,209,323 - 22,230,716 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX10,654,376 - 10,675,615 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:34800366  


Genomics

Comparative Map Data
Cxhxorf38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,800,935 - 12,823,632 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX12,802,377 - 12,814,198 (+)EnsemblGRCr8
mRatBN7.2X10,128,070 - 10,150,904 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX10,129,657 - 10,150,900 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX10,311,146 - 10,332,257 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,808,307 - 13,829,420 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X10,077,428 - 10,098,584 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X11,082,668 - 11,105,588 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX11,084,317 - 11,105,588 (+)Ensemblrn6Rnor6.0
Rnor_5.0X11,881,213 - 11,904,145 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X22,209,323 - 22,230,716 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX10,654,376 - 10,675,615 (+)NCBICelera
Cytogenetic MapXq12NCBI
CXorf38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X40,626,921 - 40,647,561 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX40,626,921 - 40,647,569 (-)Ensemblhg38GRCh38
GRCh37X40,486,173 - 40,506,813 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X40,373,984 - 40,391,721 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X40,245,297 - 40,263,031NCBI
CeleraX44,626,483 - 44,646,806 (-)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX38,197,224 - 38,236,929 (-)NCBIHuRef
CHM1_1X40,518,647 - 40,538,963 (-)NCBICHM1_1
T2T-CHM13v2.0X40,028,466 - 40,048,779 (-)NCBIT2T-CHM13v2.0
1810030O07Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X12,521,118 - 12,540,175 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX12,521,118 - 12,539,907 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X12,654,879 - 12,673,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX12,654,879 - 12,673,668 (-)Ensemblmm10GRCm38
MGSCv37X12,232,010 - 12,250,672 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X11,811,843 - 11,830,505 (-)NCBIMGSCv36mm8
CeleraX10,348,775 - 10,367,528 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX7.5NCBI
CUNHXorf38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555651,963,196 - 1,983,171 (+)Ensembl
ChiLan1.0NW_0049555651,963,195 - 1,983,171 (+)NCBIChiLan1.0ChiLan1.0
CXHXorf38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X42,273,296 - 42,293,669 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X42,276,672 - 42,296,970 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,074,757 - 33,095,049 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X40,780,832 - 40,798,628 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX40,777,829 - 40,798,628 (-)EnsemblpanPan2panpan1.1
CXHXorf38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,101,755 - 35,121,453 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX35,106,819 - 35,121,385 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX22,450,012 - 22,469,735 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,150,143 - 35,169,858 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX35,152,854 - 35,169,780 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X35,229,210 - 35,248,925 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,201,904 - 35,221,627 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,244,707 - 35,264,423 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CXHXorf38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X27,420,047 - 27,437,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,259,928 - 7,278,725 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,260,094 - 7,278,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXHXorf38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,328,653 - 36,351,826 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X36,330,684 - 36,351,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X40,428,897 - 40,450,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXHXorf38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X37,788,826 - 37,809,922 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX37,788,702 - 37,809,007 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660762,986,612 - 3,006,929 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNHXorf38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,906,980 - 14,924,250 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476214,906,973 - 14,927,869 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
CXHXorf38
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X8,715,280 - 8,737,463 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cxhxorf38
58 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:40
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000031808
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149314046933Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat

Markers in Region
RH134557  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X12,823,190 - 12,823,381 (+)Marker Load Pipeline
mRatBN7.2X10,150,462 - 10,150,653 (+)MAPPERmRatBN7.2
Rnor_6.0X11,105,114 - 11,105,337NCBIRnor6.0
Rnor_5.0X11,903,671 - 11,903,894UniSTSRnor5.0
RGSC_v3.4X22,230,275 - 22,230,465UniSTSRGSC3.4
CeleraX10,675,173 - 10,675,364UniSTS
RH 3.4 MapX33.3UniSTS
Cytogenetic MapXq13UniSTS
RH143076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X10,147,650 - 10,147,949 (+)MAPPERmRatBN7.2
Rnor_6.0X11,102,302 - 11,102,600NCBIRnor6.0
Rnor_5.0X11,900,859 - 11,901,157UniSTSRnor5.0
RGSC_v3.4X22,227,463 - 22,227,761UniSTSRGSC3.4
CeleraX10,672,361 - 10,672,659UniSTS
RH 3.4 MapX39.3UniSTS
Cytogenetic MapXq13UniSTS
BM383929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X10,144,002 - 10,144,170 (+)MAPPERmRatBN7.2
Rnor_6.0X11,098,654 - 11,098,821NCBIRnor6.0
Rnor_5.0X11,897,211 - 11,897,378UniSTSRnor5.0
RGSC_v3.4X22,223,660 - 22,223,827UniSTSRGSC3.4
CeleraX10,668,713 - 10,668,880UniSTS
RH 3.4 MapX36.7UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000031808   ⟹   ENSRNOP00000033524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX11,084,317 - 11,105,544 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093745   ⟹   ENSRNOP00000076260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX12,802,377 - 12,814,198 (+)Ensembl
mRatBN7.2 EnsemblX10,129,657 - 10,150,900 (+)Ensembl
Rnor_6.0 EnsemblX11,084,317 - 11,105,588 (+)Ensembl
RefSeq Acc Id: NM_001126286   ⟹   NP_001119758
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,802,394 - 12,823,632 (+)NCBI
mRatBN7.2X10,129,662 - 10,150,904 (+)NCBI
Rnor_6.0X11,084,317 - 11,105,588 (+)NCBI
Rnor_5.0X11,881,213 - 11,904,145 (+)NCBI
RGSC_v3.4X22,209,323 - 22,230,716 (+)RGD
CeleraX10,654,376 - 10,675,615 (+)RGD
Sequence:
RefSeq Acc Id: XM_017602061   ⟹   XP_017457550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,800,935 - 12,823,632 (+)NCBI
mRatBN7.2X10,128,070 - 10,150,904 (+)NCBI
Rnor_6.0X11,082,668 - 11,105,221 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099758   ⟹   XP_038955686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,803,895 - 12,823,632 (+)NCBI
mRatBN7.2X10,130,203 - 10,150,904 (+)NCBI
RefSeq Acc Id: XM_063280042   ⟹   XP_063136112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,800,935 - 12,817,086 (+)NCBI
RefSeq Acc Id: XM_063280043   ⟹   XP_063136113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,800,935 - 12,817,086 (+)NCBI
RefSeq Acc Id: XM_063280044   ⟹   XP_063136114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,802,253 - 12,803,879 (+)NCBI
RefSeq Acc Id: XR_005497979
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,800,935 - 12,823,632 (+)NCBI
mRatBN7.2X10,128,070 - 10,150,904 (+)NCBI
RefSeq Acc Id: XR_005497980
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,800,935 - 12,823,632 (+)NCBI
mRatBN7.2X10,128,070 - 10,150,904 (+)NCBI
RefSeq Acc Id: NP_001119758   ⟸   NM_001126286
- UniProtKB: B1WBZ6 (UniProtKB/TrEMBL),   A6JZZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457550   ⟸   XM_017602061
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000033524   ⟸   ENSRNOT00000031808
Ensembl Acc Id: ENSRNOP00000076260   ⟸   ENSRNOT00000093745
RefSeq Acc Id: XP_038955686   ⟸   XM_039099758
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063136112   ⟸   XM_063280042
- Peptide Label: isoform X1
- UniProtKB: B1WBZ6 (UniProtKB/TrEMBL),   A6JZZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136113   ⟸   XM_063280043
- Peptide Label: isoform X1
- UniProtKB: B1WBZ6 (UniProtKB/TrEMBL),   A6JZZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136114   ⟸   XM_063280044
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBZ6-F1-model_v2 AlphaFold B1WBZ6 1-320 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701721
Promoter ID:EPDNEW_R12236
Type:multiple initiation site
Name:RGD1565685_1
Description:similar to RIKEN cDNA 1810030O07
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X11,084,318 - 11,084,378EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565685 AgrOrtholog
BioCyc Gene G2FUF-3065 BioCyc
Ensembl Genes ENSRNOG00000023187 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000093745 ENTREZGENE
  ENSRNOT00000093745.3 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9025517 IMAGE-MGC_LOAD
InterPro DUF4559 UniProtKB/TrEMBL
KEGG Report rno:317344 UniProtKB/TrEMBL
MGC_CLONE MGC:187741 IMAGE-MGC_LOAD
NCBI Gene 317344 ENTREZGENE
PANTHER PTHR35083 UniProtKB/TrEMBL
  RGD1565685 PROTEIN UniProtKB/TrEMBL
Pfam DUF4559 UniProtKB/TrEMBL
PhenoGen Cxhxorf38 PhenoGen
RatGTEx ENSRNOG00000023187 RatGTEx
UniProt A6JZZ9 ENTREZGENE, UniProtKB/TrEMBL
  B1WBZ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cxhxorf38  similar to human chromosome X open reading frame 38  RGD1565685  similar to RIKEN cDNA 1810030O07  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1565685  similar to RIKEN cDNA 1810030O07   RGD1565685_predicted  similar to RIKEN cDNA 1810030O07 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565685_predicted  similar to RIKEN cDNA 1810030O07 (predicted)  LOC317344  similar to RIKEN cDNA 1810030O07  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317344  similar to RIKEN cDNA 1810030O07      Symbol and Name status set to provisional 70820 PROVISIONAL