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Gene: Mid2 (midline 2) Rattus norvegicus

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Symbol:

Mid2

Name:

midline 2

RGD ID:

1565674

Description:

Predicted to enable several functions, including microtubule binding activity; protein homodimerization activity; and transcription coactivator activity. Predicted to be involved in several processes, including host-mediated suppression of symbiont invasion; negative regulation of viral transcription; and positive regulation of canonical NF-kappaB signal transduction. Predicted to be located in cytoplasm and cytoskeleton. Predicted to colocalize with microtubule. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 101. Orthologous to human MID2 (midline 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC363502; midline-2; probable E3 ubiquitin-protein ligase MID2; RGD1565674; similar to Trim1 alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MID2 (midline 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Mid2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mid2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MID2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MID2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mid2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MID2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MID2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mid2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mid2 (midline 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MID1 (midline 1)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Mid2 (midline 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MID2 (midline 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mid2 (midline 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mid2 (midline 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mid2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	109,143,057 - 109,245,257 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	109,143,253 - 109,245,255 (+)	Ensembl				GRCr8
mRatBN7.2	X	104,354,692 - 104,456,757 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,355,316 - 104,453,473 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	106,484,643 - 106,582,790 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	109,983,989 - 110,082,138 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	107,531,877 - 107,629,899 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	112,019,897 - 112,121,980 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	112,020,646 - 112,121,943 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	52,479,569 - 52,581,663 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	128,496,689 - 128,595,233 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	43,484,990 - 43,583,167 (-)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

non-syndromic X-linked intellectual disability 101 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

ethylparaben (ISO)

FR900359 (ISO)

iron dichloride (ISO)

methcathinone (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

host-mediated suppression of symbiont invasion (IEA,ISO)

innate immune response (IEA,ISO)

negative regulation of viral transcription (IEA,ISO)

positive regulation of autophagy (IEA,ISO)

positive regulation of canonical NF-kappaB signal transduction (IEA,ISO)

positive regulation of DNA-templated transcription (IEA)

protein K48-linked ubiquitination (IEA,ISO)

protein localization to microtubule (IBA,IEA,ISO)

suppression of viral release by host (IEA,ISO)

Cellular Component

cytoskeleton (IEA)

microtubule (IBA,IEA,ISO)

Molecular Function

enzyme binding (IEA,ISO)

identical protein binding (ISO)

metal ion binding (IEA)

microtubule binding (IBA,IEA,ISO)

phosphoprotein binding (IEA,ISO)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

transcription coactivator activity (IEA,ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10400986	PMID:11806752	PMID:18248090	PMID:19056867	PMID:23077300	PMID:25416956	PMID:26347139

Genomics

Comparative Map Data

Mid2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	109,143,057 - 109,245,257 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	109,143,253 - 109,245,255 (+)	Ensembl				GRCr8
mRatBN7.2	X	104,354,692 - 104,456,757 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,355,316 - 104,453,473 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	106,484,643 - 106,582,790 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	109,983,989 - 110,082,138 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	107,531,877 - 107,629,899 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	112,019,897 - 112,121,980 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	112,020,646 - 112,121,943 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	52,479,569 - 52,581,663 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	128,496,689 - 128,595,233 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	43,484,990 - 43,583,167 (-)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

MID2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	107,825,735 - 107,931,637 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	107,825,755 - 107,931,637 (+)	Ensembl			hg38	GRCh38
GRCh37	X	107,068,965 - 107,174,867 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	106,956,116 - 107,057,077 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	107,540,045 - 107,645,826 (+)	NCBI		Celera
Cytogenetic Map	X	q22.3	NCBI
HuRef	X	96,692,632 - 96,797,758 (+)	NCBI		HuRef
CHM1_1	X	106,979,937 - 107,085,716 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	106,262,471 - 106,368,728 (+)	NCBI		T2T-CHM13v2.0

Mid2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	139,565,326 - 139,668,464 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	139,565,348 - 139,668,464 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	140,664,304 - 140,767,715 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	140,664,599 - 140,767,715 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	137,212,567 - 137,302,254 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	136,011,320 - 136,114,080 (+)	NCBI		MGSCv36	mm8
Celera	X	123,937,263 - 124,027,053 (+)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	61.35	NCBI

Mid2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	7,973,211 - 8,088,427 (-)	Ensembl
ChiLan1.0	NW_004955490	7,977,771 - 8,168,912 (-)	NCBI	ChiLan1.0	ChiLan1.0

MID2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	107,301,285 - 107,405,554 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	107,304,702 - 107,413,484 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	96,917,731 - 97,026,545 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	107,290,776 - 107,393,162 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	107,290,776 - 107,393,162 (+)	Ensembl			panPan2	panpan1.1

MID2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	81,267,037 - 81,467,613 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	81,296,249 - 81,463,210 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	67,387,281 - 67,588,271 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	82,914,364 - 83,116,618 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	82,942,999 - 83,112,209 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	80,374,592 - 80,575,813 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	82,086,451 - 82,288,627 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	81,878,438 - 82,081,198 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	80,731,399 - 80,828,234 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	6,829,729 - 6,926,571 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	6,833,328 - 6,926,531 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MID2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	88,294,067 - 88,393,742 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	88,294,032 - 88,394,885 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	102,730,773 - 102,831,117 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MID2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	95,664,705 - 95,760,256 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	95,665,380 - 95,764,762 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	20,771,575 - 20,871,556 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mid2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	8,536,953 - 8,650,805 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624803	8,536,946 - 8,650,775 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mid2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	93,082,103 - 93,179,939 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mid2
476 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	35
Count of miRNA genes:	29
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000020145
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	88	59	6	352	188	11	140	81	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079841 ⟹ ENSRNOP00000069903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	109,143,820 - 109,241,973 (+)	Ensembl
mRatBN7.2 Ensembl	X	104,355,316 - 104,453,473 (+)	Ensembl
Rnor_6.0 Ensembl	X	112,020,646 - 112,121,943 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118902 ⟹ ENSRNOP00000101518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	109,143,253 - 109,245,255 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143485 ⟹ ENSRNOP00000107382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	109,143,820 - 109,241,973 (+)	Ensembl

RefSeq Acc Id:

NM_001191889 ⟹ NP_001178818

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,143,820 - 109,241,973 (+)	NCBI
mRatBN7.2	X	104,355,316 - 104,453,473 (+)	NCBI
Rnor_6.0	X	112,020,565 - 112,118,696 (+)	NCBI
Rnor_5.0	3	52,479,569 - 52,581,663 (-)	NCBI
Celera	3	43,484,990 - 43,583,167 (-)	NCBI

Sequence:

show sequence

CAGCGGAGAAGGCGGGCGGCGGCCTAGAGTGGTGGTGGCGGCGGCGGCGGCAGCGACAGCGGCC
CGGGAGCTTGCGCGGGAGCCCGAGCCAGCTTGCTGTGGAGGCCAGCGAGCGCACGGCGCTTCCC
GGCGCGCGTAGGAGATGGCTGACACCCGGGAACAATATGGGTGAGAGCCCAGCCTCTGCGGTTC
TTAATGCCTCAGCAGGATTATTTTCACTAAAGATGGAAACACTGGAGTCTGAATTGACCTGTCC
AATCTGCCTCGAGTTGTTTGAAGACCCCCTTCTGCTCCCTTGTGCTCACAGCCTATGTTTTAGC
TGTGCTCACCGCATCCTGGTCTCAAGCTGCAGCTCCGGTGAATCCATTGAACCCATTACTGCTT
TTCAGTGTCCTACATGCAGGTATGTTATCTCGCTGAATCACCGGGGCCTGGATGGCCTCAAGAG
GAATGTGACCCTGCAGAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCT
CCAAGTGAGAGCCGTCGGGAGAGGACTTACAGGCCTGGTTCCGCCATGTCGAGTGAGCGAATTG
CATGTCAGTTCTGTGAGCAGGACCCTCCGAGAGATGCTGTAAAGACATGCATCACCTGTGAGGT
CTCCTACTGTGACCGGTGCCTTCGGGCCACACACCCCAACAAGAAACCTTTCACGAGCCATCGC
CTGGTGGAACCAGTTTCAGACACACATCTTCGAGGGATTACCTGTCTGGACCATGAGAATGAGA
AGGTGAACATGTACTGTGTATCTGATGACCAATTGATCTGTGCCTTATGCAAACTGGTGGGTCG
TCACCGAGACCATCAGGTCGCTTCTCTGAATGATCGATTTGAGAAACTAAAGCAAACTCTCGAG
ATGAACCTCACCAACCTGGTTAAGCGCAACAGCGAACTAGAAAATCAAATGGCCAAACTAATAC
AGATCTGCCAGCAAGTTGAGGTGAATACTGCTATGCACGAGGCAAAACTTATGGAAGAGTGTGA
CGAGCTGGTAGAGATCATCCAGCAGAGGAAACAAATGATTGCCGTCAAAATCAAAGAGACAAAG
GTTATGAAACTGAGAAAGTTGGCCCAGCAGGTTGCTAATTGCCGCCAGTGTCTTGAACGGTCAA
CAGTCCTCATCAACCAGGCTGAGCATATCCTAAAGGAAAACGACCAAGCTCGCTTTCTGCAGTC
TGCAAAAAATATTGCCGAGAGGGTCGCTATGGCAACTGCATCTTCGCAAGTTCTGATTCCAGAC
ATCAATTTTAATGATGCCTTTGAAAACTTTGCTTTAGATTTTTCTAGAGAAAAGAAACTATTGG
AGGGGCTAGACTATTTAACAGCTCCAAACCCACCATCTATCCGAGAAGAACTCTGTACTGCTTC
CCATGACACCATTACGGTCCACTGGATCTCAGACGACGAGTTCAGCATCAGCTCCTATGAGCTT
CAGTACACCATATTCACTGGCCAGGCTAACTTCATCAGTAAGTCATGGTGTAGTTGGGGCCTGT
GGCCAGAGATAAGGAAATGTAAGGAAGCAGTAAGCTGCTCAAGACTGGCCGGTGCGCCACGAGG
CCTGTACAATTCAGTGGACAGCTGGATGATTGTGCCCAACATTAAGCAGAACCATTACACAGTC
CATGGACTCCAGAGTGGGACACGCTACATCTTTATTGTGAAAGCCATAAATCAAGCAGGCAGCC
GGAACAGTGAACCCACCAGGCTAAAAACAAACAGCCAACCATTTAAACTAGATCCCAAAATGAC
TCACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGATGGAGAAGGACGAGAGCTCTCTGAAG
AAGAGCCACACTCCGGAGAGATTTAGTGGCACGGGGTGTTATGGGGCAGCAGGAAATATATTCA
TTGACAGTGGCTGCCACTACTGGGAGGTGGTCATGGGTTCTTCAACATGGTATGCAATCGGTAT
TGCCTACAAATCAGCTCCAAAGAACGAGTGGATTGGCAAGAATGCCTCTTCCTGGGTCTTCTCT
CGATGCAACAGTCACTTCGTGGTGCGACATAACAACAAGGAAATGCTGGTGGATGTGCCCCCAC
AGTTGAAGCGTCTAGGCGTCCTCTTGGATTATGACAACAACATGCTGTCTTTCTATGACCCAGC
TAACTCTCTCCATCTTCATACTTTTGATGTTACCTTCATTCTTCCAGTTTGTCCAACATTCACA
ATCTGGAACAAATCCCTAATGATCCTGTCTGGCTTGCCTGCCCCAGATTTTATTGATTATCCTG
AGCGGCAGGAATGCAACTGCAGGCCTCAAGAATCCCCGTATGTGTCGGGGATGAAAGCTTGTCA
TTAAGTGTCAAGAGAGCATGTAAGTCGCTGGCTCTCCGGTTCAGCACTTCTGCCCTTCTCAAGC
CTCCATTAGTGCTCCATATATGAGATACAAACTAAAGTTCGTTGGGAGCACCCAAAATAACTAG
ATATTGTAGACTTAATTTTTGTGCATTGAAACTTATGTTTGAATTCATGTATTGAGTTACTCAG
AACAAATTAATCTGAATGGTCTGGGTTCATGCCACCAGGGAAGAATTTTAGAGAATATCTCTGG
CGTCATT

hide sequence

RefSeq Acc Id:

XM_006234247 ⟹ XP_006234309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,143,416 - 109,245,257 (+)	NCBI
mRatBN7.2	X	104,354,900 - 104,456,757 (+)	NCBI
Rnor_6.0	X	112,020,142 - 112,121,980 (+)	NCBI
Rnor_5.0	3	52,479,569 - 52,581,663 (-)	NCBI

Sequence:

show sequence

TGCTCAGGTTTCTCCGGTCACTCCTGCCAGGGGGAGAAAACATGTAAGCGCGCCTCCAGAGGAG
GGGCACGGGGAGCTGGGAGTGGCGGGGGCGGCGGAAGGTGAGCCTAGGAAGGTGGCCCAGCGCC
CCTTCTGCCCGGGCCCCTCCCCGTGCTCCCTTAGGGTGTCAGTCTCCGCTCCGCTTGCCCCCAC
TCCACCCTCCTTTCGAAGGGATTGCCTTTTTTTTCCTCTGCGGCGGCGGAAATGACAGTGTGGT
GCTGCGGTGGTGTCATGGAGCTGCCTCTGGACTGAGAGGCGAAAACTCTTTAAGTTTAGCCCGG
GAGACCTAGACGCCGGAACGTCGCGGTCTCCGTGCTGTCTCCCGTGGGGCGCGCGGGCTGGCGG
ATCCCGGCTGCTGCGCGGCGGCAACGGCGGCGGCGGCCGCAGCGGAGAAGGCGGGCGGCGGCCT
AGAGTGGTGGTGGCGGCGGCGGCGGCAGCGACAGCGGCCCGGGAGCTTGCGCGGGAGCCCGAGC
CAGCTTGCTGTGGAGGCCAGCGAGCGCACGGCGCTTCCCGGCGCGCGTAGGAGATGGCTGACAC
CCGGGAACAATATGGGTGAGAGCCCAGCCTCTGCGGTTCTTAATGCCTCAGCAGGATTATTTTC
ACTAAAGATGGAAACACTGGAGTCTGAATTGACCTGTCCAATCTGCCTCGAGTTGTTTGAAGAC
CCCCTTCTGCTCCCTTGTGCTCACAGCCTATGTTTTAGCTGTGCTCACCGCATCCTGGTCTCAA
GCTGCAGCTCCGGTGAATCCATTGAACCCATTACTGCTTTTCAGTGTCCTACATGCAGGTATGT
TATCTCGCTGAATCACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCCTGCAGAACATTATT
GATCGCTTCCAGAAGGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGTCGGGAGAGGA
CTTACAGGCCTGGTTCCGCCATGTCGAGTGAGCGAATTGCATGTCAGTTCTGTGAGCAGGACCC
TCCGAGAGATGCTGTAAAGACATGCATCACCTGTGAGGTCTCCTACTGTGACCGGTGCCTTCGG
GCCACACACCCCAACAAGAAACCTTTCACGAGCCATCGCCTGGTGGAACCAGTTTCAGACACAC
ATCTTCGAGGGATTACCTGTCTGGACCATGAGAATGAGAAGGTGAACATGTACTGTGTATCTGA
TGACCAATTGATCTGTGCCTTATGCAAACTGGTGGGTCGTCACCGAGACCATCAGGTCGCTTCT
CTGAATGATCGATTTGAGAAACTAAAGCAAACTCTCGAGATGAACCTCACCAACCTGGTTAAGC
GCAACAGCGAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCAGCAAGTTGAGGTGAA
TACTGCTATGCACGAGGCAAAACTTATGGAAGAGTGTGACGAGCTGGTAGAGATCATCCAGCAG
AGGAAACAAATGATTGCCGTCAAAATCAAAGAGACAAAGGTTATGAAACTGAGAAAGTTGGCCC
AGCAGGTTGCTAATTGCCGCCAGTGTCTTGAACGGTCAACAGTCCTCATCAACCAGGCTGAGCA
TATCCTAAAGGAAAACGACCAAGCTCGCTTTCTGCAGTCTGCAAAAAATATTGCCGAGAGGGTC
GCTATGGCAACTGCATCTTCGCAAGTTCTGATTCCAGACATCAATTTTAATGATGCCTTTGAAA
ACTTTGCTTTAGATTTTTCTAGAGAAAAGAAACTATTGGAGGGGCTAGACTATTTAACAGCTCC
AAACCCACCATCTATCCGAGAAGAACTCTGTACTGCTTCCCATGACACCATTACGGTCCACTGG
ATCTCAGACGACGAGTTCAGCATCAGCTCCTATGAGCTTCAGTACACCATATTCACTGGCCAGG
CTAACTTCATCAGCCTGTACAATTCAGTGGACAGCTGGATGATTGTGCCCAACATTAAGCAGAA
CCATTACACAGTCCATGGACTCCAGAGTGGGACACGCTACATCTTTATTGTGAAAGCCATAAAT
CAAGCAGGCAGCCGGAACAGTGAACCCACCAGGCTAAAAACAAACAGCCAACCATTTAAACTAG
ATCCCAAAATGACTCACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGATGGAGAAGGACGA
GAGCTCTCTGAAGAAGAGCCACACTCCGGAGAGATTTAGTGGCACGGGGTGTTATGGGGCAGCA
GGAAATATATTCATTGACAGTGGCTGCCACTACTGGGAGGTGGTCATGGGTTCTTCAACATGGT
ATGCAATCGGTATTGCCTACAAATCAGCTCCAAAGAACGAGTGGATTGGCAAGAATGCCTCTTC
CTGGGTCTTCTCTCGATGCAACAGTCACTTCGTGGTGCGACATAACAACAAGGAAATGCTGGTG
GATGTGCCCCCACAGTTGAAGCGTCTAGGCGTCCTCTTGGATTATGACAACAACATGCTGTCTT
TCTATGACCCAGCTAACTCTCTCCATCTTCATACTTTTGATGTTACCTTCATTCTTCCAGTTTG
TCCAACATTCACAATCTGGAACAAATCCCTAATGATCCTGTCTGGCTTGCCTGCCCCAGATTTT
ATTGATTATCCTGAGCGGCAGGAATGCAACTGCAGGCCTCAAGAATCCCCGTATGTGTCGGGGA
TGAAAGCTTGTCATTAAGTGTCAAGAGAGCATGTAAGTCGCTGGCTCTCCGGTTCAGCACTTCT
GCCCTTCTCAAGCCTCCATTAGTGCTCCATATATGAGATACAAACTAAAGTTCGTTGGGAGCAC
CCAAAATAACTAGATATTGTAGACTTAATTTTTGTGCATTGAAACTTATGTTTGAATTCATGTA
TTGAGTTACTCAGAACAAATTAATCTGAATGGTCTGGGTTCATGCCACCAGGGAAGAATTTTAG
AGAATATCTCTGGCGTCATTGGAAAATTTAAAATTCCCAGTGATTTGGGAGTATAAATGATACT
GTTAGGAATTAGCCTTTCTAGCAATGGCTAGTGTGGCCAGGTAGAATTTGCACAGTGTCAAATT
ATCACTTATTGTATGTCACTTTTTAATAAACTAATGATTGAGGTGTTTTGGGAACATCATACAT
GTGCATATATAATATATAAAATGGCTGAATTCGTTTTATGAGCAAAATGACAGATAATTTTATC
TATTACATATACACAATAAACCTTAATTTGTGCATTTATATAAGAAATATATGGAAAAGGAAAA
TAAATCATAGTGTCCACTCCTAACCCCTAGGTGAAACATCACGGTTAGCCAGCATTTCTCTCTC
CTTCCCTTCAAGCCTTTCTTACCTCCCTCTTGTCTCACATGCACACACATGCAATCGAGACACA
GGAAGTGAGAAGAGCTCTTGGTTAGATGAGGAGAGATCTGGGGATATGATTGTACAGGAGATGC
TAATGCTACATAGAAAATCGATTCTGGTAGAAGGGTCTTGTGTAGCATAATTTCGTTGATATTA
ATGGAGGAGATTCATTTGAATTGTTAAAAATGTCATAGAATATTTCAAAGAAATATAGTTTTGT
TATTCTCAAATACAAAGTTACTAGAGTTAGGCTTAAGAATAGAGTTACATAATGGACTTTCTTC
AGAACTCGCCTTACTTGAGCAGTAAGAATGGAGTGTTACAGGTTCAATACCTATATGCATACAA
ATGTACTTATCTTTTCAGACGAAGCACTCCCGAAATGCTGTTTTCCTCAAGAGGTTCAATACTC
ATTAGTTTTGGAATTTTGTTTATACTCTTCATTCCCTTGCATTCCCTCCGTGACAAATAAAAAC
ATAAATTCCATCCTACTTTTCATCACAGAAATTGAGCTTCACAGTCTGTGATTTCACCAGTTCT
GTTTGCAGAGATTAATTAGAAATGCCAGAGAAATAGAGCCTTCTTCCAGGAGTCAAATCTACTC
CTTGGTACTTGTAAAATGATTACTACTGTGTAATTGTTAAGTGCTAGCAGTGGCCATTCCCTGG
ATTGTATGTAGCCTTGATACAGTGTCAAACGTTAGCCCCTCGTTCTACTAGCATGGAGGATTCT
TATTTGTTAATTTGTTCAATGATGCCACGTTACTGCTGATAGAATGCACATATTAGTAAAATGA
AGTCGTTGCTGTCAAATGTCTCACTCTTAATGCACAAGAGACGACATATCTCTGTGAGTCCCAC
CTAACGAACCTTCCGGATTGTTTGCTTACCTACCACAAAAAGCAAGGCCTGTGCCAATACAAAA
GGAAGACTCAGATTTACACGCCAGGTAACAAACTCAGTTTCTTTGACTTTAAAGGTTATGCGTA
CCTTACGGTTCATCAGGGAATGAGCAAACTCACTATAGCTGCCCATTCTACTTTTGACTGCAGC
TTAGACTGCTTTCCTTATCCCGTCTTTTCTGGTTAACTAGTGATCTCTGAAATTGGCTTTGTGG
CCCTCCGTGGCTCTCCCCTGGCACACTGAGCACTCTCCACATCCCAGCAACAATTAACGTCATA
TCAATGCCATCCTTGAAAGGCCCATTTTAGAGGCACTGTTAGTGATTTGTTCCTTAAAACAATT
GATTCTTGGCCCGTGCTCCTGATATACTTAATTAAAGTATCTGTGAACATAAGGAAACTTATAT
TTGGGACATGCTTCTCAGGTTATTCTGAATCACACAAAAGTTTAATGTATAATAATAATAATAA
TAATAATCTTCCCTAGAGTGAGACTAAGTTGGGGGTAAGGGCTGTGGCTTTTATTGTTGTATTT
TTAATACCCAGCACAGTGTCTGGAAAAAAGTAGTTGCCTGGCTAATGCTTGTGAAAGAATGTAT
GAATGATCAAAATTGCTCTGTTTAACTGTGATGTCCATTTGTGGTATTTGTTATCCTTGGGGGC
AAGTTGGTTACTTTTTTAGTCTGTATTGGTATTATTTTGTAAATGTACCAGGCCTTATACATAC
AAACGAACATTGTTGCAGATTGGCAGTTACGGAGAATCGTCTTTGGAGCATGTGACATCATTCT
ACCAGTTATAGCTCATATTTTCATGAACTCCAATGAACATTGTTGTTCTTCAAAGGTAGATTTA
AGCTTTAGTACAGGCAGAGTTACACCTACTGAATAAACAGAAAAATTAAATGGGGTTTGTGGGA
AACAAGAAGGCTTGGCTCTGAAATGCTAACTTCTGGGGCACGTAATGAAATGCATTCCAAGAAA
CAAAATGATGGCAAACCCCTCAGAGGGATATGTGAGTTCCAGTTATTGACTTCAGTAAACTTAA
GACTTTCCTAGAACACTGGCAATGGCAGGGACCAGAGGCGTCTGACTCTAGCTAAAGCCAGTTG
CACAAATGGGACATGACCATTCTGCATCTTCGAGAAAGATGATTCCATAACATGGTTGTTGCTT
TACTCGCTCTAACTATCCTGAACTTTTTCTCCTAGAAAATTATTTTCTGTCTGCAATTTATGCT
TGTTTCCACTTTTTATATCGTCTTATTAAAGAAAGCACAAACGAAAGCTAAGCTTGTTTTGAGA
CTACAAAAGAAATTTTAAACGCCACATTGATGTTCTTGCTACTTATAAGAGTAACTGCATCTGG
CTGTGTTTTTATTATGTTAATTCCATTGTGTGTCTTTGGATGCAGTGAAGTTCATATTGTAACA
GAATCACTTATATATGCTTTTCAGCTCAAACATTCTAGGTGAATCCTCTCAGTTTACATATTTG
TATATGACTACCTGGATGGATCAGTTCGTGGATGGACTTTTGAATAAGCTTAGATGCTGGAACC
CATTCCATCGAGGAATGGAAATATGCGAGGCAGGTAGACATGACCCACTCCCACACTTATTTGT
AGCTCCTGAAGCCAATTCCAGCCTCAGAGCCATTGGGCTGTGTTTGGCTGTGTATTACAAGTTG
GCCAGATTTATTGCCATCAGGTCCGGCAAAACTGCCTTTTATGGTGTGGTCTGCCAGCTTCAGA
AATATGCTGTGTTATTGTTATTGGCTAGAATATTTATTAGACTATTGTTGGACTATTTTTTATC
AAATGCTTTACCCCAGGCTTGTTTGTACTGGGAGCTCTGGACCAATAGTGTCTCTCCTAGTAAC
AGAAATATGAGCATCTGTGGATTACACAGTCTTACCCTCTCTAAAGATCCCAACCCATCCAAAT
GCTATATTATGAATTAAAATAAATATATATGTATTCATGA

hide sequence

RefSeq Acc Id:

XM_006234248 ⟹ XP_006234310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,143,173 - 109,245,257 (+)	NCBI
mRatBN7.2	X	104,354,692 - 104,456,757 (+)	NCBI
Rnor_6.0	X	112,019,897 - 112,121,980 (+)	NCBI
Rnor_5.0	3	52,479,569 - 52,581,663 (-)	NCBI

Sequence:

show sequence

AAGAGTTTGGCCACAGTCTTCCTTCTGTACTTCACACATACCACCCGCTCGCTTGTAGACGCGC
AAACACACACACACACACACACACACACACACACACATACACACACACACACACGCCTGTTCAG
TCAGTCCCCTTCTCCCCGTGTCTTCCATCAAGATGACAGGGTGCTGGAGAAAAGGCTGCTGGAA
TCAGCTGGTGAGAGCCCAGCCTCTGCGGTTCTTAATGCCTCAGCAGGATTATTTTCACTAAAGA
TGGAAACACTGGAGTCTGAATTGACCTGTCCAATCTGCCTCGAGTTGTTTGAAGACCCCCTTCT
GCTCCCTTGTGCTCACAGCCTATGTTTTAGCTGTGCTCACCGCATCCTGGTCTCAAGCTGCAGC
TCCGGTGAATCCATTGAACCCATTACTGCTTTTCAGTGTCCTACATGCAGGTATGTTATCTCGC
TGAATCACCGGGGCCTGGATGGCCTCAAGAGGAATGTGACCCTGCAGAACATTATTGATCGCTT
CCAGAAGGCTTCAGTCAGTGGGCCCAATTCTCCAAGTGAGAGCCGTCGGGAGAGGACTTACAGG
CCTGGTTCCGCCATGTCGAGTGAGCGAATTGCATGTCAGTTCTGTGAGCAGGACCCTCCGAGAG
ATGCTGTAAAGACATGCATCACCTGTGAGGTCTCCTACTGTGACCGGTGCCTTCGGGCCACACA
CCCCAACAAGAAACCTTTCACGAGCCATCGCCTGGTGGAACCAGTTTCAGACACACATCTTCGA
GGGATTACCTGTCTGGACCATGAGAATGAGAAGGTGAACATGTACTGTGTATCTGATGACCAAT
TGATCTGTGCCTTATGCAAACTGGTGGGTCGTCACCGAGACCATCAGGTCGCTTCTCTGAATGA
TCGATTTGAGAAACTAAAGCAAACTCTCGAGATGAACCTCACCAACCTGGTTAAGCGCAACAGC
GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCAGCAAGTTGAGGTGAATACTGCTA
TGCACGAGGCAAAACTTATGGAAGAGTGTGACGAGCTGGTAGAGATCATCCAGCAGAGGAAACA
AATGATTGCCGTCAAAATCAAAGAGACAAAGGTTATGAAACTGAGAAAGTTGGCCCAGCAGGTT
GCTAATTGCCGCCAGTGTCTTGAACGGTCAACAGTCCTCATCAACCAGGCTGAGCATATCCTAA
AGGAAAACGACCAAGCTCGCTTTCTGCAGTCTGCAAAAAATATTGCCGAGAGGGTCGCTATGGC
AACTGCATCTTCGCAAGTTCTGATTCCAGACATCAATTTTAATGATGCCTTTGAAAACTTTGCT
TTAGATTTTTCTAGAGAAAAGAAACTATTGGAGGGGCTAGACTATTTAACAGCTCCAAACCCAC
CATCTATCCGAGAAGAACTCTGTACTGCTTCCCATGACACCATTACGGTCCACTGGATCTCAGA
CGACGAGTTCAGCATCAGCTCCTATGAGCTTCAGTACACCATATTCACTGGCCAGGCTAACTTC
ATCAGTAAGTCATGGTGTAGTTGGGGCCTGTGGCCAGAGATAAGGAAATGTAAGGAAGCAGTAA
GCTGCTCAAGACTGGCCGGTGCGCCACGAGGCCTGTACAATTCAGTGGACAGCTGGATGATTGT
GCCCAACATTAAGCAGAACCATTACACAGTCCATGGACTCCAGAGTGGGACACGCTACATCTTT
ATTGTGAAAGCCATAAATCAAGCAGGCAGCCGGAACAGTGAACCCACCAGGCTAAAAACAAACA
GCCAACCATTTAAACTAGATCCCAAAATGACTCACAAGAAGTTGAAGATCTCCAATGATGGATT
GCAGATGGAGAAGGACGAGAGCTCTCTGAAGAAGAGCCACACTCCGGAGAGATTTAGTGGCACG
GGGTGTTATGGGGCAGCAGGAAATATATTCATTGACAGTGGCTGCCACTACTGGGAGGTGGTCA
TGGGTTCTTCAACATGGTATGCAATCGGTATTGCCTACAAATCAGCTCCAAAGAACGAGTGGAT
TGGCAAGAATGCCTCTTCCTGGGTCTTCTCTCGATGCAACAGTCACTTCGTGGTGCGACATAAC
AACAAGGAAATGCTGGTGGATGTGCCCCCACAGTTGAAGCGTCTAGGCGTCCTCTTGGATTATG
ACAACAACATGCTGTCTTTCTATGACCCAGCTAACTCTCTCCATCTTCATACTTTTGATGTTAC
CTTCATTCTTCCAGTTTGTCCAACATTCACAATCTGGAACAAATCCCTAATGATCCTGTCTGGC
TTGCCTGCCCCAGATTTTATTGATTATCCTGAGCGGCAGGAATGCAACTGCAGGCCTCAAGAAT
CCCCGTATGTGTCGGGGATGAAAGCTTGTCATTAAGTGTCAAGAGAGCATGTAAGTCGCTGGCT
CTCCGGTTCAGCACTTCTGCCCTTCTCAAGCCTCCATTAGTGCTCCATATATGAGATACAAACT
AAAGTTCGTTGGGAGCACCCAAAATAACTAGATATTGTAGACTTAATTTTTGTGCATTGAAACT
TATGTTTGAATTCATGTATTGAGTTACTCAGAACAAATTAATCTGAATGGTCTGGGTTCATGCC
ACCAGGGAAGAATTTTAGAGAATATCTCTGGCGTCATTGGAAAATTTAAAATTCCCAGTGATTT
GGGAGTATAAATGATACTGTTAGGAATTAGCCTTTCTAGCAATGGCTAGTGTGGCCAGGTAGAA
TTTGCACAGTGTCAAATTATCACTTATTGTATGTCACTTTTTAATAAACTAATGATTGAGGTGT
TTTGGGAACATCATACATGTGCATATATAATATATAAAATGGCTGAATTCGTTTTATGAGCAAA
ATGACAGATAATTTTATCTATTACATATACACAATAAACCTTAATTTGTGCATTTATATAAGAA
ATATATGGAAAAGGAAAATAAATCATAGTGTCCACTCCTAACCCCTAGGTGAAACATCACGGTT
AGCCAGCATTTCTCTCTCCTTCCCTTCAAGCCTTTCTTACCTCCCTCTTGTCTCACATGCACAC
ACATGCAATCGAGACACAGGAAGTGAGAAGAGCTCTTGGTTAGATGAGGAGAGATCTGGGGATA
TGATTGTACAGGAGATGCTAATGCTACATAGAAAATCGATTCTGGTAGAAGGGTCTTGTGTAGC
ATAATTTCGTTGATATTAATGGAGGAGATTCATTTGAATTGTTAAAAATGTCATAGAATATTTC
AAAGAAATATAGTTTTGTTATTCTCAAATACAAAGTTACTAGAGTTAGGCTTAAGAATAGAGTT
ACATAATGGACTTTCTTCAGAACTCGCCTTACTTGAGCAGTAAGAATGGAGTGTTACAGGTTCA
ATACCTATATGCATACAAATGTACTTATCTTTTCAGACGAAGCACTCCCGAAATGCTGTTTTCC
TCAAGAGGTTCAATACTCATTAGTTTTGGAATTTTGTTTATACTCTTCATTCCCTTGCATTCCC
TCCGTGACAAATAAAAACATAAATTCCATCCTACTTTTCATCACAGAAATTGAGCTTCACAGTC
TGTGATTTCACCAGTTCTGTTTGCAGAGATTAATTAGAAATGCCAGAGAAATAGAGCCTTCTTC
CAGGAGTCAAATCTACTCCTTGGTACTTGTAAAATGATTACTACTGTGTAATTGTTAAGTGCTA
GCAGTGGCCATTCCCTGGATTGTATGTAGCCTTGATACAGTGTCAAACGTTAGCCCCTCGTTCT
ACTAGCATGGAGGATTCTTATTTGTTAATTTGTTCAATGATGCCACGTTACTGCTGATAGAATG
CACATATTAGTAAAATGAAGTCGTTGCTGTCAAATGTCTCACTCTTAATGCACAAGAGACGACA
TATCTCTGTGAGTCCCACCTAACGAACCTTCCGGATTGTTTGCTTACCTACCACAAAAAGCAAG
GCCTGTGCCAATACAAAAGGAAGACTCAGATTTACACGCCAGGTAACAAACTCAGTTTCTTTGA
CTTTAAAGGTTATGCGTACCTTACGGTTCATCAGGGAATGAGCAAACTCACTATAGCTGCCCAT
TCTACTTTTGACTGCAGCTTAGACTGCTTTCCTTATCCCGTCTTTTCTGGTTAACTAGTGATCT
CTGAAATTGGCTTTGTGGCCCTCCGTGGCTCTCCCCTGGCACACTGAGCACTCTCCACATCCCA
GCAACAATTAACGTCATATCAATGCCATCCTTGAAAGGCCCATTTTAGAGGCACTGTTAGTGAT
TTGTTCCTTAAAACAATTGATTCTTGGCCCGTGCTCCTGATATACTTAATTAAAGTATCTGTGA
ACATAAGGAAACTTATATTTGGGACATGCTTCTCAGGTTATTCTGAATCACACAAAAGTTTAAT
GTATAATAATAATAATAATAATAATCTTCCCTAGAGTGAGACTAAGTTGGGGGTAAGGGCTGTG
GCTTTTATTGTTGTATTTTTAATACCCAGCACAGTGTCTGGAAAAAAGTAGTTGCCTGGCTAAT
GCTTGTGAAAGAATGTATGAATGATCAAAATTGCTCTGTTTAACTGTGATGTCCATTTGTGGTA
TTTGTTATCCTTGGGGGCAAGTTGGTTACTTTTTTAGTCTGTATTGGTATTATTTTGTAAATGT
ACCAGGCCTTATACATACAAACGAACATTGTTGCAGATTGGCAGTTACGGAGAATCGTCTTTGG
AGCATGTGACATCATTCTACCAGTTATAGCTCATATTTTCATGAACTCCAATGAACATTGTTGT
TCTTCAAAGGTAGATTTAAGCTTTAGTACAGGCAGAGTTACACCTACTGAATAAACAGAAAAAT
TAAATGGGGTTTGTGGGAAACAAGAAGGCTTGGCTCTGAAATGCTAACTTCTGGGGCACGTAAT
GAAATGCATTCCAAGAAACAAAATGATGGCAAACCCCTCAGAGGGATATGTGAGTTCCAGTTAT
TGACTTCAGTAAACTTAAGACTTTCCTAGAACACTGGCAATGGCAGGGACCAGAGGCGTCTGAC
TCTAGCTAAAGCCAGTTGCACAAATGGGACATGACCATTCTGCATCTTCGAGAAAGATGATTCC
ATAACATGGTTGTTGCTTTACTCGCTCTAACTATCCTGAACTTTTTCTCCTAGAAAATTATTTT
CTGTCTGCAATTTATGCTTGTTTCCACTTTTTATATCGTCTTATTAAAGAAAGCACAAACGAAA
GCTAAGCTTGTTTTGAGACTACAAAAGAAATTTTAAACGCCACATTGATGTTCTTGCTACTTAT
AAGAGTAACTGCATCTGGCTGTGTTTTTATTATGTTAATTCCATTGTGTGTCTTTGGATGCAGT
GAAGTTCATATTGTAACAGAATCACTTATATATGCTTTTCAGCTCAAACATTCTAGGTGAATCC
TCTCAGTTTACATATTTGTATATGACTACCTGGATGGATCAGTTCGTGGATGGACTTTTGAATA
AGCTTAGATGCTGGAACCCATTCCATCGAGGAATGGAAATATGCGAGGCAGGTAGACATGACCC
ACTCCCACACTTATTTGTAGCTCCTGAAGCCAATTCCAGCCTCAGAGCCATTGGGCTGTGTTTG
GCTGTGTATTACAAGTTGGCCAGATTTATTGCCATCAGGTCCGGCAAAACTGCCTTTTATGGTG
TGGTCTGCCAGCTTCAGAAATATGCTGTGTTATTGTTATTGGCTAGAATATTTATTAGACTATT
GTTGGACTATTTTTTATCAAATGCTTTACCCCAGGCTTGTTTGTACTGGGAGCTCTGGACCAAT
AGTGTCTCTCCTAGTAACAGAAATATGAGCATCTGTGGATTACACAGTCTTACCCTCTCTAAAG
ATCCCAACCCATCCAAATGCTATATTATGAATTAAAATAAATATATATGTATTCATGA

hide sequence

RefSeq Acc Id:

XM_063280153 ⟹ XP_063136223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,143,057 - 109,245,257 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178818	(Get FASTA)	NCBI Sequence Viewer
	NP_001421217	(Get FASTA)	NCBI Sequence Viewer
	NP_001421218	(Get FASTA)	NCBI Sequence Viewer
	NP_001421219	(Get FASTA)	NCBI Sequence Viewer
	XP_006234309	(Get FASTA)	NCBI Sequence Viewer
	XP_006234310	(Get FASTA)	NCBI Sequence Viewer
	XP_063136223	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069903
	ENSRNOP00000069903.2
	ENSRNOP00000101518
	ENSRNOP00000101518.1
	ENSRNOP00000107382.1

RefSeq Acc Id:

NP_001178818 ⟸ NM_001191889

- UniProtKB:

A0A0G2JWJ3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGESPASAVLNASAGLFSLKMETLESELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSSCSS
GESIEPITAFQCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRP
GSAMSSERIACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVSDTHLRG
ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRNSE
LENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRKLAQQVA
NCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQVLIPDINFNDAFENFAL
DFSREKKLLEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFI
SKSWCSWGLWPEIRKCKEAVSCSRLAGAPRGLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFI
VKAINQAGSRNSEPTRLKTNSQPFKLDPKMTHKKLKISNDGLQMEKDESSLKKSHTPERFSGTG
CYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIAYKSAPKNEWIGKNASSWVFSRCNSHFVVRHNN
KEMLVDVPPQLKRLGVLLDYDNNMLSFYDPANSLHLHTFDVTFILPVCPTFTIWNKSLMILSGL
PAPDFIDYPERQECNCRPQESPYVSGMKACH

hide sequence

RefSeq Acc Id:

XP_006234310 ⟸ XM_006234248

- Peptide Label:

isoform X3

- Sequence:

show sequence

METLESELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTCRYVIS
LNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPGSAMSSERIACQFCEQDPPR
DAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVSDTHLRGITCLDHENEKVNMYCVSDDQ
LICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRNSELENQMAKLIQICQQVEVNTA
MHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRKLAQQVANCRQCLERSTVLINQAEHIL
KENDQARFLQSAKNIAERVAMATASSQVLIPDINFNDAFENFALDFSREKKLLEGLDYLTAPNP
PSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISKSWCSWGLWPEIRKCKEAV
SCSRLAGAPRGLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTN
SQPFKLDPKMTHKKLKISNDGLQMEKDESSLKKSHTPERFSGTGCYGAAGNIFIDSGCHYWEVV
MGSSTWYAIGIAYKSAPKNEWIGKNASSWVFSRCNSHFVVRHNNKEMLVDVPPQLKRLGVLLDY
DNNMLSFYDPANSLHLHTFDVTFILPVCPTFTIWNKSLMILSGLPAPDFIDYPERQECNCRPQE
SPYVSGMKACH

hide sequence

RefSeq Acc Id:

XP_006234309 ⟸ XM_006234247

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGESPASAVLNASAGLFSLKMETLESELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSSCSS
GESIEPITAFQCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRP
GSAMSSERIACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVSDTHLRG
ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRNSE
LENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRKLAQQVA
NCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQVLIPDINFNDAFENFAL
DFSREKKLLEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFI
SLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKLDPKM
THKKLKISNDGLQMEKDESSLKKSHTPERFSGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIG
IAYKSAPKNEWIGKNASSWVFSRCNSHFVVRHNNKEMLVDVPPQLKRLGVLLDYDNNMLSFYDP
ANSLHLHTFDVTFILPVCPTFTIWNKSLMILSGLPAPDFIDYPERQECNCRPQESPYVSGMKAC
H

hide sequence

Ensembl Acc Id:

ENSRNOP00000069903 ⟸ ENSRNOT00000079841

RefSeq Acc Id:	XP_063136223 ⟸ XM_063280153
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000107382 ⟸ ENSRNOT00000143485

Ensembl Acc Id:

ENSRNOP00000101518 ⟸ ENSRNOT00000118902

Protein Domains

B box-type B30.2/SPRY COS Fibronectin type-III RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JWJ3-F1-model_v2	AlphaFold	A0A0G2JWJ3	1-705	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565674	AgrOrtholog
BioCyc Gene	G2FUF-1540	BioCyc
Ensembl Genes	ENSRNOG00000060542	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079841	ENTREZGENE
	ENSRNOT00000079841.3	UniProtKB/TrEMBL
	ENSRNOT00000118902	ENTREZGENE
	ENSRNOT00000118902.2	UniProtKB/TrEMBL
	ENSRNOT00000143485.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	4.10.830.40	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	B30.2/SPRY_sf	UniProtKB/TrEMBL
	B302	UniProtKB/TrEMBL
	Bbox_C	UniProtKB/TrEMBL
	Butyrophylin	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	COS_domain	UniProtKB/TrEMBL
	E3_ligase_FN3/SPRY	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	MID2	UniProtKB/TrEMBL
	MID2_Bbox1_Zfn	UniProtKB/TrEMBL
	MID2_Bbox2_Zfn	UniProtKB/TrEMBL
	Midline-1_COS	UniProtKB/TrEMBL
	SPRY/PRY_TRIM1	UniProtKB/TrEMBL
	SPRY_rcpt	UniProtKB/TrEMBL
	Znf-RING_LisH	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:363502	UniProtKB/TrEMBL
NCBI Gene	363502	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	UniProtKB/TrEMBL
	PTHR24099:SF12	UniProtKB/TrEMBL
Pfam	ANCHR-like_BBOX	UniProtKB/TrEMBL
	COS	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
	zf-B_box	UniProtKB/TrEMBL
	zf-RING_UBOX	UniProtKB/TrEMBL
PhenoGen	Mid2	PhenoGen
PRINTS	BUTYPHLNCDUF	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	COS	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
	ZF_BBOX	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000060542	RatGTEx
SMART	BBC	UniProtKB/TrEMBL
	BBOX	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	B-box zinc-binding domain	UniProtKB/TrEMBL
	ConA_like_lec_gl	UniProtKB/TrEMBL
	FN_III-like	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A0G2JWJ3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LKT0_RAT	UniProtKB/TrEMBL
	A0ABK0LNP2_RAT	UniProtKB/TrEMBL
	A6HLR4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Mid2	midline 2	Mid2_predicted	midline 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Mid2_predicted	midline 2 (predicted)	RGD1565674_predicted	similar to Trim1 alpha (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1565674_predicted	similar to Trim1 alpha (predicted)	LOC363502	similar to Trim1 alpha	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC363502	similar to Trim1 alpha			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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