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Gene: Vsig1 (V-set and immunoglobulin domain containing 1) Rattus norvegicus

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Symbol:

Vsig1

Name:

V-set and immunoglobulin domain containing 1

RGD ID:

1565570

Description:

Predicted to be involved in maintenance of gastrointestinal epithelium. Predicted to act upstream of or within epithelial cell morphogenesis. Predicted to be located in plasma membrane. Predicted to be active in basolateral plasma membrane. Orthologous to human VSIG1 (V-set and immunoglobulin domain containing 1); INTERACTS WITH 17beta-estradiol; bisphenol A; vinclozolin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC315920; MGC114516; similar to RIKEN cDNA 4930405J24; V-set and immunoglobulin domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	109,395,406 - 109,428,612 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	109,395,035 - 109,428,624 (+)	Ensembl				GRCr8
mRatBN7.2	X	104,607,031 - 104,640,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,607,031 - 104,639,249 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	106,736,345 - 106,768,561 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	110,235,703 - 110,267,919 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	107,789,739 - 107,821,925 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	112,268,786 - 112,303,849 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	112,270,986 - 112,303,846 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	128,750,376 - 128,782,154 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	43,302,084 - 43,334,283 (-)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

4,4'-sulfonyldiphenol (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

camptothecin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

fulvestrant (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-Nitrosopyrrolidine (ISO)

Nutlin-3 (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

propanal (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

epithelial cell morphogenesis (IEA,ISO)

maintenance of gastrointestinal epithelium (IBA,IEA,ISO)

Cellular Component

basolateral plasma membrane (IBA,ISO)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:21991385

Genomics

Comparative Map Data

Vsig1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	109,395,406 - 109,428,612 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	109,395,035 - 109,428,624 (+)	Ensembl				GRCr8
mRatBN7.2	X	104,607,031 - 104,640,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,607,031 - 104,639,249 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	106,736,345 - 106,768,561 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	110,235,703 - 110,267,919 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	107,789,739 - 107,821,925 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	112,268,786 - 112,303,849 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	112,270,986 - 112,303,846 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	128,750,376 - 128,782,154 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	43,302,084 - 43,334,283 (-)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

VSIG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	108,018,879 - 108,079,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	108,044,970 - 108,079,184 (+)	Ensembl			hg38	GRCh38
GRCh37	X	107,288,295 - 107,322,414 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	107,174,856 - 107,209,070 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	107,094,344 - 107,128,558	NCBI
Celera	X	107,759,672 - 107,793,886 (+)	NCBI		Celera
Cytogenetic Map	X	q22.3	NCBI
HuRef	X	96,911,024 - 96,945,061 (+)	NCBI		HuRef
CHM1_1	X	107,199,027 - 107,233,291 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	106,456,465 - 106,516,780 (+)	NCBI		T2T-CHM13v2.0

Vsig1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	139,808,357 - 139,840,221 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	139,808,357 - 139,840,221 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	140,907,608 - 140,939,472 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	140,907,608 - 140,939,472 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	137,442,147 - 137,474,011 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	136,253,984 - 136,285,322 (+)	NCBI		MGSCv36	mm8
Celera	X	124,163,008 - 124,194,683 (+)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	61.62	NCBI

Vsig1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	7,837,397 - 7,871,588 (-)	Ensembl
ChiLan1.0	NW_004955490	7,837,846 - 7,871,540 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSIG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	107,526,291 - 107,560,308 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	107,529,895 - 107,563,826 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	97,030,289 - 97,177,080 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	107,513,181 - 107,547,170 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	107,513,181 - 107,547,170 (+)	Ensembl			panPan2	panpan1.1

VSIG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	81,574,202 - 81,618,242 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	81,574,025 - 81,616,879 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	67,694,985 - 67,739,070 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	83,223,396 - 83,267,781 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	83,223,363 - 83,266,418 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	80,682,761 - 80,726,838 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	82,395,332 - 82,439,388 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	82,187,480 - 82,231,918 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vsig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	80,919,499 - 80,950,165 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	6,708,049 - 6,738,306 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	6,708,049 - 6,738,358 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSIG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	88,500,715 - 88,534,961 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	88,468,498 - 88,534,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

VSIG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	95,871,312 - 95,926,718 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	95,904,516 - 95,924,884 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	20,963,711 - 21,025,092 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vsig1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	8,422,036 - 8,457,102 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624803	8,421,863 - 8,457,044 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vsig1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	93,323,824 - 93,357,690 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vsig1
246 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	28
Count of miRNA genes:	26
Interacting mature miRNAs:	28
Transcripts:	ENSRNOT00000020974
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	7	31	121	58	57	26	76	26	6	251	132	6	102	71	88	31	7	7

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000082652 ⟹ ENSRNOP00000075185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	109,395,035 - 109,428,616 (+)	Ensembl
mRatBN7.2 Ensembl	X	104,607,031 - 104,639,249 (+)	Ensembl
Rnor_6.0 Ensembl	X	112,270,993 - 112,303,846 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091441 ⟹ ENSRNOP00000073037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	109,395,613 - 109,428,624 (+)	Ensembl
mRatBN7.2 Ensembl	X	104,607,031 - 104,639,249 (+)	Ensembl
Rnor_6.0 Ensembl	X	112,270,986 - 112,303,570 (+)	Ensembl

RefSeq Acc Id:

NM_001037784 ⟹ NP_001032873

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,395,518 - 109,427,736 (+)	NCBI
mRatBN7.2	X	104,607,031 - 104,639,252 (+)	NCBI
Rnor_6.0	X	112,270,993 - 112,303,849 (+)	NCBI
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI
RGSC_v3.4	X	128,750,376 - 128,782,154 (+)	RGD
Celera	3	43,302,084 - 43,334,283 (-)	NCBI

Sequence:

show sequence

AGCAAGCTTAAGGAGGCCTATTTGCTTGGTGATGCCCAGCTGATAAGACAGGCAAACCTCCCTG
TGATTGAAGAAGCCAATTTGAAACTCAGCCTAGTTCAGGCGGCCTTCAGACTGGCACCTGCTGC
TCCAGGCGACTTTCAGCATGATGGTGTTTGCATTTTGGAAGGTCTTTCTGATCTTAAACTGCCT
TGCAGGTCAGGTCAATATGGTGCAAGTGACCATCCCAGACACTTTTGTGAATGTGACTGTTGGA
TCTAATGTTACTCTTCTCTGCCTGTATACCACCACTGTGACATCCCTGGAAAAGCTTTCAATCC
AATGGTCTTTCTTCCACAATAAGGAAATGGAGCCAATATCCATCTACTACTCTGAAGGTGGACA
GGCTTCAGCTATTGGGCAATTCAAGGATCGAATAATAGGGGCTACTAATCCTGGTAATGCATCT
ATCACCATATTGCATATGCAGCCAGCAGACAGTGGAATTTACATATGTGATGTCAACAATCCTC
CAGATTTTTTTGGAAAAAACCAAGGCATCCTTGACGTCACTGTCTTAGTCAAACCTTCCAAGCC
CTTTTGTTCCATCCAAGGAAGACCAGAAGCAGGCCACCCTATTTCCTTGTCTTGCCTTTCTGCC
TTTGGAACACCATCTCCTGTGTATTACTGGTATAAGATTGAGGGGAACACCATTGTGCCAGTAA
AAGAAAGCTTCAACTCAGCCACTGGAGTTTTGGATATTGGAAATCTAACAAATTTTGAAAAAGG
TTATTACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAATTGATTTAACCTCT
TCAGATCCAGAAGTCGGAATCATCATTGGAGCCTTGGTCGGTGCCCTGACTGGAGCTGCTATCA
TCATCTGTGTCGTGTACTTTGCCAGGAACAAAGTTAAATCCAAGCAAAAGAATTTAAATTCCAG
CACAGAGCTTGAGCCAATGACAAAAGTACACCATTCCCGACAAAATGAGGCTATTCCAGCGGGT
GGCATCCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCCAGCCACAACACTGAACCTACCA
CTGCAGTCTTGGAGCCAGAATATGAGCCTAATCCCCCGCTGGAAACTGCCACACAGCCTGACCC
TGAACCAGAGGGTTCAGGGCCGATGCCAGTGCCTGAGACGGAGATTCAACTGCAGCCAGAGATG
GAGCTGGAACCGGAGACAGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTCAACCTGAGCTTGAGT
CAGAGCTTGAGCCCGACCCCCAGTCTGGAGTAATAGTTGAGCCTATGCGTGAGGAGGAAAAGGA
AACAGTTAAGGCATAAACAGTAAGGCACGGCATTGAAGTATGGCAGTTCCCAGTAAAGAACCCA
TTCCTGGCTTTTAAAATTCGATGGACTTAACCAGCCCCCAGTTTGTCCGACCATCATGGACAAT
GTTCATCTAACAACATGCTCATTCCAACCATTAATCCAAAATAAAGAAATCAAGGTTACTAGTA
AAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234243 ⟹ XP_006234305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,395,406 - 109,428,612 (+)	NCBI
mRatBN7.2	X	104,607,079 - 104,640,128 (+)	NCBI
Rnor_6.0	X	112,268,786 - 112,303,554 (+)	NCBI
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI

Sequence:

show sequence

GCAGAAACCAAGGAGAAGTGTTTTTTAGTGCCATCCTCCCCCAATCTTGCTCAGGTTACTTTCT
TATACTCCCCAGGATACTGGACTCGGCATCTCCCACATCACTCATTAAAGAAATATTATGTAAA
CTTGCCTACAGGCCAATCTCATGGAGGCATTTCTCAGTTAAGAGTCTACCTTCTCAGATACATC
TAGGTTTATCTCAAGATGACAAAAATCAACCAGGACAGCCAGTTATATTGCCAATCTACTATGG
TCATGTATGGAACATAGGAAGAAACATATAAGCCCGTGATTAACGAACAGCATACCCAAGAGGA
AGAATAGGCCATGAGTTTCAGAGGGAGTGGGAAAGAAGAATGGGAAGAATTATAGTGAGGAAAA
GGGGAGCAGAAATGAGGTAAATACAGTGCTCATATATTGAAAATTTCAACAATGACTACAAAGG
AATAAAATAGAAAATAGCTACCTCTAAACACGCTCTCTCTATTTCACTGTCTTGCCAACAGAAA
TGTCAATGGCTTTTAGTGAAAACGGTGGGTCTTTTGGAGCCTTTATGCACTTAGAAGCCAAGGC
TTAATATCCAAGGTTCAGGAGAGCTGGTGTGGACCCCCAGAGAGCAATCCTTATAAGCTGTCCT
CTGGTGCAGAACTTCGCCATAAATTTTCTCATTGATTAATTCTCTTGATCAGAAATTTAGTTGG
AGGACACCAGCCATTGATCATCAGTAGTGTGAACAGATTGCAAATTGTTCATAAATAGTATTGT
TGCCTTGATACTGGCATTTTACAAATGGTGATGTTTCCTGGAGGAATACAGATAGAAAGGAAAA
AGAAATTTGGAGTATGAGATCTCTGTGGAGTGCATGCCCCTTAACGACAGCCCAGAAACTCACA
GGACTAAGGATGTAGGCTCGGAAAGCAAAGTAGGTATCAAGGGCATGCAATATTTATTTACAAA
AAAATTGTCCTGTGCATAATTCCTGCCGTGAAGGGGAAAATGGTTTTCTCTGCCATCTGTTGTT
TTTTTCTCTTCATCCCCATTCTTTATGGCATGGTACCCAAAATTAAGCTGGATTTCAAGTAAGG
TCTGCATAGGACAAAGGCTTTGATTCATCACATTGCTTCTGCAAGAATATGAATTATCAGGTAT
ATTTTGAGACACACTATTTCTTAAGTTAGGACTTTCCTGTATAAGAATTGATCTTTCTCCCTGA
AGGGGCTCACTATTCCTAGAAGAGGTCACAAGCAGTGAATTTAGGTGAGTCTCAGTTAATAATA
GGAAACTATGGGGGAGCAATCGAGTATCAACTGCCCAATAGCAATTGACTGCCAGCCAAATGTG
AATTTAGGCCAGGGGTATTTAAGGGAGAACTGACATGTACATTTACAAAATCTAAGAATGTGCT
CAGACAGCAAGATGAGGGAGTGCAAGACTCTGAGGATGAGAAGTCCTTAAGGTTTTGGCATCAG
ACATAGATGTGGATAGGGACGTCTGAAAGGAGAAGTTAGGTTTTATAGAAGTGAAAGGGTTTTC
TGAAGAGGGGGGAATTCACTTGGCTAAAGAAAGATGGAAGTGAAATCGTTTTCTTGTAAATGAA
AGTTCATAAAACATGATTTGAAATGAGTGCTCTTTGTCTGACTAAACACTTCGAGCAATAAATC
TTTTCAGCACTTACTGTGACTATAATTCAGATATAATGAAGACCAGATCATGAAAAGCTGGGAA
TCAAGAAGGACCCCGGACTTCTTGTTGACAGTCCAGTTCATGGAGAGTGTTACTGAAAATGCCT
TATTAGAGTTGAGAGACATTAGCCTGAGACTGGTACAAATTATTACACAGGATAAAGGAGAAAG
AAATGCAGGAGACCATTCAGGAAGCTGCTGCTATAGGCTAACGTTATGTCTAGGACATAATGAA
AGCAGCAGGTTGGACATGGGACAAATCTACCATTCATTTTAGAAGCAGCAGGACCAAGACATCT
TATGGGAAGAACTGGAGGAGGTCCTTCAAGTACAACTTCTTTTTTTATTTCAAGAGTTGATTTT
AAACAATGCAACCTAAGAGAATCTGTGAACAAAGAGCTGGAAGGACTTAAGTGTGTGGTTTATT
ATTAACACAGTAGCAAATATATCAAGGGAACACACCCGGGGGAAAAGTGTTTCAAATAAACACA
GATCTGTTCAGAGAGAAGTCAGTGCCCAATAAGCAAGCTTAAGGAGGCCTATTTGCTTGGTGAT
GCCCAGCTGATAAGACAGGCAAACCTCCCTGTGATTGAAGAAGCCAATTTGAAACTCAGCCTAG
TTCAGGCGGCCTTCAGACTGGCACCTGCTGCTCCAGGCGACTTTCAGCATGATGGTGTTTGCAT
TTTGGAAGGTCTTTCTGATCTTAAACTGCCTTGCAGGTCAGGTCAATATGGTGCAAGTGACCAT
CCCAGACACTTTTGTGAATGTGACTGTTGGATCTAATGTTACTCTTCTCTGCCTGTATACCACC
ACTGTGACATCCCTGGAAAAGCTTTCAATCCAATGGTCTTTCTTCCACAATAAGGAAATGGAGC
CAATATCCCCTGGCTCGCACCCCAAAACTGAGTGTATGGAGGAAAAGGCAGTCAGTCAGTGTCT
AAAAATGATGCATTCAAGAGACGCTCGGGGAAGATGTAGCTGGACCTCTCAGATCTACTACTCT
GAAGGTGGACAGGCTTCAGCTATTGGGCAATTCAAGGATCGAATAATAGGGGCTACTAATCCTG
GTAATGCATCTATCACCATATTGCATATGCAGCCAGCAGACAGTGGAATTTACATATGTGATGT
CAACAATCCTCCAGATTTTTTTGGAAAAAACCAAGGCATCCTTGACGTCACTGTCTTAGTCAAA
CCTTCCAAGCCCTTTTGTTCCATCCAAGGAAGACCAGAAGCAGGCCACCCTATTTCCTTGTCTT
GCCTTTCTGCCTTTGGAACACCATCTCCTGTGTATTACTGGTATAAGATTGAGGGGAACACCAT
TGTGCCAGTAAAAGAAAGCTTCAACTCAGCCACTGGAGTTTTGGATATTGGAAATCTAACAAAT
TTTGAAAAAGGTTATTACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAATTG
ATTTAACCTCTTCAGATCCAGAAGTCGGAATCATCATTGGAGCCTTGGTCGGTGCCCTGACTGG
AGCTGCTATCATCATCTGTGTCGTGTACTTTGCCAGGAACAAAGTTAAATCCAAGCAAAAGAAT
TTAAATTCCAGCACAGAGCTTGAGCCAATGACAAAAGTACACCATTCCCGACAAAATGAGGCTA
TTCCAGCGGGTGGCATCCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCCAGCCACAACAC
TGAACCTACCACTGCAGTCTTGGAGCCAGAATATGAGCCTAATCCCCCGCTGGAAACTGCCACA
CAGCCTGACCCTGAACCAGAGGGTTCAGGGCCGATGCCAGTGCCTGAGACGGAGATTCAACTGC
AGCCAGAGATGGAGCTGGAACCGGAGACAGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTCAACC
TGAGCTTGAGTCAGAGCTTGAGCCCGACCCCCAGTCTGGAGTAATAGTTGAGCCTATGCGTGAG
GAGGAAAAGGAAACAGTTAAGGCATAAACAGTAAGGCACGGCATTGAAGTATGGCAGTTCCCAG
TAAAGAACCCATTCCTGGCTTTTAAAATTCGATGGACTTAACCAGCCCCCAGTTTGTCCGACCA
TCATGGACAATGTTCATCTAACAACATGCTCATTCCAACCA

hide sequence

RefSeq Acc Id:

XM_006234245 ⟹ XP_006234307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,411,907 - 109,428,612 (+)	NCBI
mRatBN7.2	X	104,623,439 - 104,640,128 (+)	NCBI
Rnor_6.0	X	112,284,875 - 112,303,554 (+)	NCBI
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI

Sequence:

show sequence

AAAAATAAAACAAAATCTAGAGAAATTTTTAGTTTTCCCTTCTCATGACCATGTCTGGAACTCT
TAATCCTCCTTCAAAGGATTCTGAGGGTTATAGCTGCTCTGACCAGGATAGTGGCCAGCTTTTG
TCTCATGTCTATCTTCCTCGCTTCAAAATCATTGCATTAAAAAGCAATCCACCCTGAGGCCCAG
TGTTTCCCAGGACCCAGGGCCAGATACTGTGCCTCAATGACCTCTCTAGGTCCATAGAAACTGC
TCTTTCCATAAACCCTCTGATCCTAAGGACATAGTGTCCATTTGGACTTCTTTTCAGAAATGCC
CTGTGTCTAAAAATATGGACAGATTCACTCTATCCCTTAGGGGATAATCTCTGAAAACGTACCT
GGTACAAGCAGACTAACCAGGAAGTTTTGGGAAATCTGGTACCTCTCTGTCCATAGATGCTTCC
TTTTTTTTGTCTCCCTTGTTATTGCTAAAAGTAGTGACAACACTTACCCATGAACAAAATGCAC
ACTGATACTGCTTAACATGGCCTTGTTAGATAGTTATCTCCTACAATCCATTTAATATAATAGA
AGAAATCCTTCGCCATTCTCATATCCACAACATGTCTCCAATTTGGACAACTACTTCCCCAGAA
TTGACTGTCTGTATTTTTTGGCTTCTTACATTTTAAAACCTGTTTTGTCCTATGCAGGTAGCAT
TATTTTGAATGTTTCTATAACTTTAAGGAGGGTTGGTTTCATCATTTCAGGGGAATTTAATAAT
GGAGAGGGCATTGATTTGATTTTGATTGTCCTTAGTGACATTTGGTGGGCACTAGCTAGAGATG
TTAAATGCTCTACAATACATGCAACAGAGCCACACAACAAATTGCCCAAAGTGCTACTGTTGCT
ATCAGAGAAGAACCTTACAATTCTCCCATCTCTTTGTACTAATGCAGGTCCATTCTGGGCTTCA
TTTCATTTCTGTTGAAGAAGTATACCCAAGCAGGGATCTTCCACGATTTTATCCAAAATAGTCA
CTCAAATGGTGGACATCTCAAGCAAATAGCAGAGAGCCTTTTTGTGGCATTCTATTTCTGTTGT
GTATAGGCATAGCCTCCATAGCAGAGACCTGAGAAATCTCTGGGCCTGAAGCCTTTTGCCACTT
TCCAATCCATGTCTAGTTGCTTTGGGAGCAAAAGCAAGGAGCTGGAAAGGAGGGAAAAGGAAAG
AATGTGCGGTTTAGCTGTGGACTCCCAGGCTTCCATATCTCCCAAAGGAACCTGGAAAGCAGTT
CTGGAAGCTAATGGCATTTAGTAAATCCAACTCTGACTTAAATAGAAAGCAGATGGGATCCTTT
CACGCCTTCTTGCTTATACATCAAGCCTCTAGTTTGAGAGCAGTGGTGCAAACTTGAGGCAACA
ACTGGCTACCAGCTGCACAGCCTTGTGTGACTAGAAACTTGGCATCAGAGGCAGAGGAAGGCTG
CTGTGCAGAAACCAGGAACCTACAGTGCAGCTGGAGAATGAAACTGTTCAGCGTAGGAAGCACC
AGACCAGGGAATGGCAGTGACTGGCATGAGGTAGAAAGGAAGACTATCATATGCAATGGAATGG
TCCCAAAGGGGACAGTAAATCATCCCCCTTGTCTTGGGCAAGACTGAGAATGTTCTCTTAATGT
ATACTATGGGAGACCTAAGGCTTGGATTCCAGGTCTGATTGTAAATTGACTGTGTGAACTCAGG
AAAAATCACTTCCTCTCTTAGGGCCTCAGTGTCATCTGTAATAGATGAGAATGAATCAGAGTTT
GCAAACTGGAGGCCTTGGGGCCTGGTTTGGCTAACAGATGTATTTGGGTTGGCTAGGCAAGCAT
CTTGTTTCCACAGGTTATGCCAGCTCCTCAGTAATAAATACCACGGTCCCCGGTCCCCTCTGGC
CTTCTTAAGCCTACCCATACTTATAGACTGACCCTGCCCCAGCTTCTTCTCATATTTCCAGTAT
CCAGCCAGCCCCTGATAGCTCCTGAACCTCTGTGACATGAACTAAGTGATCTGACAGAGGACGC
AATCACTAATAGCCTCTTGTGACTCTACCCAACAGCCACCAACAAAGAGGGCAAGAAGAGGAGA
TGTTGAGAGAAAGCAGGGCTTTTGGTCATGAACATGAACACAGGCAGCAATGGGTATCATTTTA
ACAAGTCCTACTTTAGGAAACATTGGCATGGATTTTCTTGAAGCAGGGTTCCCCTCATTCCTGC
CAAGGATGTGGCCTGTTGAACACACGAGGCTTTTCCTTGGCATCAGTTGTAACTTGTAGTCCTT
CCAGAGTTATTAGATAAACAGTTTGGAGAAAGCATTCTTTTCTTGTTTTCTTCCTAAGAATAAT
GATAAGTCAGTGGACTTGCCCAAGCAGAAAGTCCCTTCATCTACCTGTCTGGCTAACATTTGCG
ACTCTCCTCTTCAGATAACAGCCTGAACTCCAAGTCTTCTGTCTCATCTCTTTAGTGTCTATGC
CTGTGAGGGAAATATTGATTGGATTGCAGTAATCTAATAATCTAGTAAGGAGCTTGATGGAAGG
GGTGATGGATCAGTTACATGTCTGAGACCTCATTGTTTACTTACGTGTCACTTTCCCCTTGATT
CAGGTCCCACTAGGAGACTTGCTTCTTTCCATTTAATTTTTGTTTAAATTTTATTTATTTGTTC
TTTATTAAGACAAAGTCTTCCCTGTAAGTCATTCTGGCTGTGTACTTGTGATCATTTTTGATTC
CAAACATATGCCACCATGACACTTCTAAAACTTAGTCCTTGTCTAAAAGGTTCTCTTGGAGCCT
CGTCTCTGCAAAATTGAGGTCCTTTCACCTAGCCTCTCTAGAACTTTCTGTGGCAAGATTGATG
TTGCATCTCATTGTGACATCATCAAACATCATAAAACAGGGCTGACTTGTTTCTTCTTGGGAGC
AGAGGAACTGGCCAGAGGCATAGGTTGGAAGGGGCTGTCTTGATGGCAGTGGCCTGGGCTCCAG
ATCTACTACTCTGAAGGTGGACAGGCTTCAGCTATTGGGCAATTCAAGGATCGAATAATAGGGG
CTACTAATCCTGGTAATGCATCTATCACCATATTGCATATGCAGCCAGCAGACAGTGGAATTTA
CATATGTGATGTCAACAATCCTCCAGATTTTTTTGGAAAAAACCAAGGCATCCTTGACGTCACT
GTCTTAGTCAAACCTTCCAAGCCCTTTTGTTCCATCCAAGGAAGACCAGAAGCAGGCCACCCTA
TTTCCTTGTCTTGCCTTTCTGCCTTTGGAACACCATCTCCTGTGTATTACTGGTATAAGATTGA
GGGGAACACCATTGTGCCAGTAAAAGAAAGCTTCAACTCAGCCACTGGAGTTTTGGATATTGGA
AATCTAACAAATTTTGAAAAAGGTTATTACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTT
CCTGTGAAATTGATTTAACCTCTTCAGATCCAGAAGTCGGAATCATCATTGGAGCCTTGGTCGG
TGCCCTGACTGGAGCTGCTATCATCATCTGTGTCGTGTACTTTGCCAGGAACAAAGTTAAATCC
AAGCAAAAGAATTTAAATTCCAGCACAGAGCTTGAGCCAATGACAAAAGTACACCATTCCCGAC
AAAATGAGGCTATTCCAGCGGGTGGCATCCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGC
CAGCCACAACACTGAACCTACCACTGCAGTCTTGGAGCCAGAATATGAGCCTAATCCCCCGCTG
GAAACTGCCACACAGCCTGACCCTGAACCAGAGGGTTCAGGGCCGATGCCAGTGCCTGAGACGG
AGATTCAACTGCAGCCAGAGATGGAGCTGGAACCGGAGACAGAGCCTGAGCCTGAGCCTGAGCC
TGAGCCTCAACCTGAGCTTGAGTCAGAGCTTGAGCCCGACCCCCAGTCTGGAGTAATAGTTGAG
CCTATGCGTGAGGAGGAAAAGGAAACAGTTAAGGCATAAACAGTAAGGCACGGCATTGAAGTAT
GGCAGTTCCCAGTAAAGAACCCATTCCTGGCTTTTAAAATTCGATGGACTTAACCAGCCCCCAG
TTTGTCCGACCATCATGGACAATGTTCATCTAACAACATGCTCATTCCAACCA

hide sequence

RefSeq Acc Id:

XM_006234246 ⟹ XP_006234308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	109,414,807 - 109,428,612 (+)	NCBI
mRatBN7.2	X	104,626,297 - 104,640,128 (+)	NCBI
Rnor_6.0	X	112,289,435 - 112,303,554 (+)	NCBI
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI

Sequence:

show sequence

ACTGAATTACATCATTACTTCCCTCCCTCTCCTGTCTCCAACCTCCCCCCCATCTTTACTTTAC
CCCTTGGTCCCTCTTAAATTCACGATTATTTTTCTCTTATAATTATTATATGTGAATAAATATG
TAACTCACCAAGTCCATATAGTGCTATCCATATGTATATAATTTTGAAGCTGGCCACTTGGCAT
TGAATAACCAATTAAAGGACTCATCACGGGTCGTGGAGAGAATCCTGATTCTCCCTCTTTCAGT
AGTCACTAAGGTCCCTGTAGCTCTTCTTTGTAATGTTTTGATCATATTTACCCCCGTCCACTTT
TCCAGGTCCACTACCTCCCTTCCCTAGCCACTTTTTGTGTCCTCTCTTTTTTCTACCCATCGAA
TCCTATTTGTGCTGCCAATATGTTCTTGAATGGGTGACCTTCACTGGAGTGTGCTTGACTGACT
TCTCAGGGACAGTATTCTTAAAGCCAACTCTCCCTCTCCCAGCAGCTATCAGTTGCCAATTGCT
TCTTCGCTAGGGGTGGACTTCATGCCCGCCTTTTCTCTCCATGCTGGGATTTGGTCTTTCTTGA
TCTTCCTTGAGCGTGTATTAAAAGACAGTCTTGTTATATAACTTAGGTGATTCTCAAAATCCTA
GTGCTCCTGTTTCAGCTTTCCAAGAGAATGAGACTTTAGCTTTATGCCACTGCTTGACTCGAGT
CCAGTATATTGTAATGATGACCAAAATGGATCCTGTCCCCTCAGATGAGTCATCTGAAGTTCTT
TATTCTCTTATTTGACATGGAGAGAAAGAGGGTAGCTAACATGGACCAAGTGCACTGTTGGCCT
TTTACTAGTTTATGTGGATTTATCTTACCACTAGGAAAGAATGAGACCAAGTGATTTCTCAAGG
AATATTCTGACCTGAAGTTTTTCATTTCTAACAAACAGAAAAAAATCCATGTGTGATTATCTAA
TAGGTACATGTGCATGAAAGGGACATGGACATTTAAACTTCTAGGGAAAGCAGTCTTATTGGGC
AAGGTAAATGTGAGTCAGAAGTTCATAAAGTGGTAAATATCTCTTGAGATGTATCTTATCTGTG
TTTATATGAAGAGCTTCTACTGGGTAGATTGAGCAGGTCTTGTTCTCCTAACCCAAGGCTAGAA
ATTAAATTCTCTGAACTCCAATTGTCATTCTCTTCTGCCCTGCCCTAGTGACGTCACAGAGCTA
TTAGGAGGCAAATGAAGATAATGGCTACCAACAACAATCTACTACTCTGAAGGTGGACAGGCTT
CAGCTATTGGGCAATTCAAGGATCGAATAATAGGGGCTACTAATCCTGGTAATGCATCTATCAC
CATATTGCATATGCAGCCAGCAGACAGTGGAATTTACATATGTGATGTCAACAATCCTCCAGAT
TTTTTTGGAAAAAACCAAGGCATCCTTGACGTCACTGTCTTAGTCAAACCTTCCAAGCCCTTTT
GTTCCATCCAAGGAAGACCAGAAGCAGGCCACCCTATTTCCTTGTCTTGCCTTTCTGCCTTTGG
AACACCATCTCCTGTGTATTACTGGTATAAGATTGAGGGGAACACCATTGTGCCAGTAAAAGAA
AGCTTCAACTCAGCCACTGGAGTTTTGGATATTGGAAATCTAACAAATTTTGAAAAAGGTTATT
ACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAATTGATTTAACCTCTTCAGA
TCCAGAAGTCGGAATCATCATTGGAGCCTTGGTCGGTGCCCTGACTGGAGCTGCTATCATCATC
TGTGTCGTGTACTTTGCCAGGAACAAAGTTAAATCCAAGCAAAAGAATTTAAATTCCAGCACAG
AGCTTGAGCCAATGACAAAAGTACACCATTCCCGACAAAATGAGGCTATTCCAGCGGGTGGCAT
CCAGCTAGAAGGAACTCTGCCATCTTCCATCCATGCCAGCCACAACACTGAACCTACCACTGCA
GTCTTGGAGCCAGAATATGAGCCTAATCCCCCGCTGGAAACTGCCACACAGCCTGACCCTGAAC
CAGAGGGTTCAGGGCCGATGCCAGTGCCTGAGACGGAGATTCAACTGCAGCCAGAGATGGAGCT
GGAACCGGAGACAGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTCAACCTGAGCTTGAGTCAGAG
CTTGAGCCCGACCCCCAGTCTGGAGTAATAGTTGAGCCTATGCGTGAGGAGGAAAAGGAAACAG
TTAAGGCATAAACAGTAAGGCACGGCATTGAAGTATGGCAGTTCCCAGTAAAGAACCCATTCCT
GGCTTTTAAAATTCGATGGACTTAACCAGCCCCCAGTTTGTCCGACCATCATGGACAATGTTCA
TCTAACAACATGCTCATTCCAACCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032873	(Get FASTA)	NCBI Sequence Viewer
	XP_006234305	(Get FASTA)	NCBI Sequence Viewer
	XP_006234307	(Get FASTA)	NCBI Sequence Viewer
	XP_006234308	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98943	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073037
	ENSRNOP00000075185
	ENSRNOP00000075185.1
GenBank Protein	Q4KLY3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001032873 ⟸ NM_001037784
- Peptide Label:	precursor
- UniProtKB:	Q4KLY3 (UniProtKB/Swiss-Prot), A6HLR1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVFAFWKVFLILNCLAGQVNMVQVTIPDTFVNVTVGSNVTLLCLYTTTVTSLEKLSIQWSFFH NKEMEPISIYYSEGGQASAIGQFKDRIIGATNPGNASITILHMQPADSGIYICDVNNPPDFFGK NQGILDVTVLVKPSKPFCSIQGRPEAGHPISLSCLSAFGTPSPVYYWYKIEGNTIVPVKESFNS ATGVLDIGNLTNFEKGYYQCTAINSLGNSSCEIDLTSSDPEVGIIIGALVGALTGAAIIICVVY FARNKVKSKQKNLNSSTELEPMTKVHHSRQNEAIPAGGIQLEGTLPSSIHASHNTEPTTAVLEP EYEPNPPLETATQPDPEPEGSGPMPVPETEIQLQPEMELEPETEPEPEPEPEPQPELESELEPD PQSGVIVEPMREEEKETVKA hide sequence

RefSeq Acc Id:	XP_006234305 ⟸ XM_006234243
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4G7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVFAFWKVFLILNCLAGQVNMVQVTIPDTFVNVTVGSNVTLLCLYTTTVTSLEKLSIQWSFFH NKEMEPISPGSHPKTECMEEKAVSQCLKMMHSRDARGRCSWTSQIYYSEGGQASAIGQFKDRII GATNPGNASITILHMQPADSGIYICDVNNPPDFFGKNQGILDVTVLVKPSKPFCSIQGRPEAGH PISLSCLSAFGTPSPVYYWYKIEGNTIVPVKESFNSATGVLDIGNLTNFEKGYYQCTAINSLGN SSCEIDLTSSDPEVGIIIGALVGALTGAAIIICVVYFARNKVKSKQKNLNSSTELEPMTKVHHS RQNEAIPAGGIQLEGTLPSSIHASHNTEPTTAVLEPEYEPNPPLETATQPDPEPEGSGPMPVPE TEIQLQPEMELEPETEPEPEPEPEPQPELESELEPDPQSGVIVEPMREEEKETVKA hide sequence

RefSeq Acc Id:

XP_006234307 ⟸ XM_006234245

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQPADSGIYICDVNNPPDFFGKNQGILDVTVLVKPSKPFCSIQGRPEAGHPISLSCLSAFGTPS
PVYYWYKIEGNTIVPVKESFNSATGVLDIGNLTNFEKGYYQCTAINSLGNSSCEIDLTSSDPEV
GIIIGALVGALTGAAIIICVVYFARNKVKSKQKNLNSSTELEPMTKVHHSRQNEAIPAGGIQLE
GTLPSSIHASHNTEPTTAVLEPEYEPNPPLETATQPDPEPEGSGPMPVPETEIQLQPEMELEPE
TEPEPEPEPEPQPELESELEPDPQSGVIVEPMREEEKETVKA

hide sequence

RefSeq Acc Id:

XP_006234308 ⟸ XM_006234246

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQPADSGIYICDVNNPPDFFGKNQGILDVTVLVKPSKPFCSIQGRPEAGHPISLSCLSAFGTPS
PVYYWYKIEGNTIVPVKESFNSATGVLDIGNLTNFEKGYYQCTAINSLGNSSCEIDLTSSDPEV
GIIIGALVGALTGAAIIICVVYFARNKVKSKQKNLNSSTELEPMTKVHHSRQNEAIPAGGIQLE
GTLPSSIHASHNTEPTTAVLEPEYEPNPPLETATQPDPEPEGSGPMPVPETEIQLQPEMELEPE
TEPEPEPEPEPQPELESELEPDPQSGVIVEPMREEEKETVKA

hide sequence

Ensembl Acc Id:

ENSRNOP00000075185 ⟸ ENSRNOT00000082652

Ensembl Acc Id:

ENSRNOP00000073037 ⟸ ENSRNOT00000091441

Protein Domains

Ig-like Ig-like C2-type Ig-like V-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLY3-F1-model_v2	AlphaFold	Q4KLY3	1-404	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565570	AgrOrtholog
BioCyc Gene	G2FUF-1531	BioCyc
Ensembl Genes	ENSRNOG00000054219	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000082652	ENTREZGENE
	ENSRNOT00000082652.2	UniProtKB/Swiss-Prot
	ENSRNOT00000091441	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7456980	IMAGE-MGC_LOAD
InterPro	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
	Myelin_P0-rel	UniProtKB/Swiss-Prot
	VSIG1	UniProtKB/Swiss-Prot
KEGG Report	rno:315920	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114516	IMAGE-MGC_LOAD
NCBI Gene	315920	ENTREZGENE
PANTHER	PTHR44974	UniProtKB/Swiss-Prot
	V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	Ig_3	UniProtKB/Swiss-Prot
	V-set	UniProtKB/Swiss-Prot
PhenoGen	Vsig1	PhenoGen
PRINTS	MYELINP0	UniProtKB/Swiss-Prot
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000054219	RatGTEx
SMART	IGc2	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0A0G2K4G7	ENTREZGENE, UniProtKB/TrEMBL
	A6HLR1	ENTREZGENE, UniProtKB/TrEMBL
	Q4KLY3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Vsig1	V-set and immunoglobulin domain containing 1	LOC315920	similar to RIKEN cDNA 4930405J24	Symbol and Name updated	1299863	APPROVED
2006-02-09	LOC315920	similar to RIKEN cDNA 4930405J24			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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