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Gene: Lsm11 (LSM11, U7 small nuclear RNA associated) Rattus norvegicus

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Symbol:

Lsm11

Name:

LSM11, U7 small nuclear RNA associated

RGD ID:

1565523

Description:

Predicted to enable U7 snRNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; positive regulation of G1/S transition of mitotic cell cycle; and regulation of chromatin organization. Predicted to be located in nucleus. Predicted to be part of U7 snRNP; histone pre-mRNA 3'end processing complex; and telomerase holoenzyme complex. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human LSM11 (LSM11, U7 small nuclear RNA associated); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC501688; RGD1565523; similar to U7 snRNA-associated Sm-like protein Lsm11; U7 snRNA-associated Sm-like protein LSm11; U7 snRNP-specific Sm-like protein LSM11

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LSM11 (LSM11, U7 small nuclear RNA associated)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lsm11 (U7 snRNP-specific Sm-like protein LSM11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lsm11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LSM11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LSM11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lsm11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LSM11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LSM11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lsm11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lsm11 (LSM11, U7 small nuclear RNA associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CCL23 (C-C motif chemokine ligand 23)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LSM11 (LSM11, U7 small nuclear RNA associated)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lsm11 (U7 snRNP-specific Sm-like protein LSM11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lsm11 (LSM11, U7 small nuclear RNA associated)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C49H3.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Lsm11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Lsm11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lsm11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lsm11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	30,869,168 - 30,887,275 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	30,872,054 - 30,887,269 (-)	Ensembl				GRCr8
mRatBN7.2	10	30,367,841 - 30,385,956 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	30,370,727 - 30,385,944 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	35,100,167 - 35,113,094 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	3,638,608 - 3,651,535 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	30,074,335 - 30,087,280 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	31,023,561 - 31,041,700 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	31,028,697 - 31,041,626 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	30,844,898 - 30,862,998 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	31,070,515 - 31,084,314 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	29,826,974 - 29,839,899 (-)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 8 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (EXP)

aldehydo-D-glucose (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

coumarin (ISO)

Cuprizon (EXP)

D-glucose (ISO)

DDE (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fenamidone (ISO)

flusilazole (ISO)

folic acid (ISO)

FR900359 (ISO)

glucose (ISO)

hexaconazole (ISO)

L-methionine (ISO)

lead(0) (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

paraquat (ISO)

pentanal (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triadimefon (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP,ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA 3'-end processing by stem-loop binding and cleavage (IEA,ISO)

mRNA processing (IEA)

positive regulation of G1/S transition of mitotic cell cycle (IEA,ISO)

regulation of chromatin organization (IEA,ISO)

Cellular Component

histone pre-mRNA 3'end processing complex (IEA,ISO)

nuclear body (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

ribonucleoprotein complex (IEA)

telomerase holoenzyme complex (IEA,ISO)

U7 snRNP (IEA,ISO)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

U7 snRNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11574479	PMID:12477932	PMID:12975319	PMID:16914750	PMID:18082603	PMID:19470752

Genomics

Comparative Map Data

Lsm11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	30,869,168 - 30,887,275 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	30,872,054 - 30,887,269 (-)	Ensembl				GRCr8
mRatBN7.2	10	30,367,841 - 30,385,956 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	30,370,727 - 30,385,944 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	35,100,167 - 35,113,094 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	3,638,608 - 3,651,535 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	30,074,335 - 30,087,280 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	31,023,561 - 31,041,700 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	31,028,697 - 31,041,626 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	30,844,898 - 30,862,998 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	31,070,515 - 31,084,314 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	29,826,974 - 29,839,899 (-)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

LSM11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	157,743,712 - 157,760,709 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	157,743,712 - 157,760,709 (+)	Ensembl			hg38	GRCh38
GRCh37	5	157,170,720 - 157,187,717 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	157,103,333 - 157,116,324 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	157,103,332 - 157,116,324	NCBI
Celera	5	153,197,357 - 153,210,338 (+)	NCBI		Celera
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	152,259,367 - 152,272,348 (+)	NCBI		HuRef
CHM1_1	5	156,603,456 - 156,616,438 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	158,262,719 - 158,279,702 (+)	NCBI		T2T-CHM13v2.0

Lsm11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	45,819,096 - 45,835,762 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	45,819,096 - 45,835,762 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	45,928,266 - 45,944,996 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	45,928,269 - 45,944,935 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	45,741,771 - 45,758,437 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	45,774,503 - 45,788,358 (-)	NCBI		MGSCv36	mm8
Celera	11	50,516,932 - 50,533,598 (-)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	27.46	NCBI

Lsm11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	11,870,524 - 11,879,041 (+)	Ensembl
ChiLan1.0	NW_004955408	11,871,335 - 11,879,041 (+)	NCBI	ChiLan1.0	ChiLan1.0

LSM11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	152,923,995 - 152,978,389 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	151,063,534 - 151,117,998 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	153,129,385 - 153,182,170 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	159,749,818 - 159,767,000 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

LSM11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	52,532,660 - 52,546,273 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	52,423,864 - 52,437,536 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	52,967,380 - 52,981,084 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	52,972,260 - 52,981,060 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	52,794,903 - 52,808,529 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	52,901,127 - 52,914,811 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	53,418,930 - 53,432,599 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lsm11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	106,996,960 - 107,009,451 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936515	5,448,490 - 5,459,295 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LSM11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	65,590,120 - 65,600,566 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	65,587,502 - 65,600,605 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	71,438,534 - 71,452,600 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LSM11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	60,151,661 - 60,166,074 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	60,152,784 - 60,164,483 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	17,464,320 - 17,478,237 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lsm11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	31,723,022 - 31,730,724 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	31,720,054 - 31,730,809 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lsm11
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	28,654,875 - 28,671,623 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lsm11
138 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	717
Count of miRNA genes:	298
Interacting mature miRNAs:	395
Transcripts:	ENSRNOT00000007267
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
631531	Iresp2	Immunoglobin response QTL2	6.3		blood immunoglobulin E amount (VT:0002492)	serum immunoglobulin E level (CMO:0002101)	10	23422121	32490778	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	29377046	52699134	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH133067

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	30,387,929 - 30,388,115 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	31,043,648 - 31,043,833	NCBI	Rnor6.0
Rnor_5.0	10	30,864,985 - 30,865,170	UniSTS	Rnor5.0
RGSC_v3.4	10	31,086,338 - 31,086,523	UniSTS	RGSC3.4
Celera	10	29,841,921 - 29,842,106	UniSTS
RH 3.4 Map	10	337.61	UniSTS
Cytogenetic Map	10	q21	UniSTS

RH136783

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	30,370,815 - 30,371,002 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	31,026,536 - 31,026,722	NCBI	Rnor6.0
Rnor_5.0	10	30,847,873 - 30,848,059	UniSTS	Rnor5.0
RGSC_v3.4	10	31,068,811 - 31,068,997	UniSTS	RGSC3.4
Celera	10	29,824,813 - 29,824,999	UniSTS
RH 3.4 Map	10	312.1	UniSTS
Cytogenetic Map	10	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007267 ⟹ ENSRNOP00000007267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	30,872,054 - 30,887,269 (-)	Ensembl
mRatBN7.2 Ensembl	10	30,370,727 - 30,385,944 (-)	Ensembl
Rnor_6.0 Ensembl	10	31,028,697 - 31,041,626 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147861 ⟹ ENSRNOP00000111519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	30,873,357 - 30,887,269 (-)	Ensembl

RefSeq Acc Id:

NM_001173384 ⟹ NP_001166855

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	30,874,304 - 30,887,233 (-)	NCBI
mRatBN7.2	10	30,372,977 - 30,385,908 (-)	NCBI
Rnor_6.0	10	31,028,697 - 31,041,626 (-)	NCBI
Rnor_5.0	10	30,844,898 - 30,862,998 (-)	NCBI
Celera	10	29,826,974 - 29,839,899 (-)	NCBI

Sequence:

show sequence

TTCAAACATGGAGGAGCGCGAGTGGGGGGCGAGGTCGGCTCGCGCCGGCAGCCCAGCCAGCCCG
CCCAGCCCGCGGCTGGACGTCAGCTCCTACAGCTTCGACCCGCTGCTGGCCCTGTACGCGCCGC
GCCTGCCGCCCATTCCTTACCCCAACGCTCCCTGCTTCAACAACGTGGCGGAGTACGAGAGCTT
CCTGAAGGGCGGGCGCACCGGGCGCGGTCGAGCTCGGGGCACGGGAGAGCCGGCCTCGGCGGGA
ACCTCCACCGGAACCTCCACGGGAGCCGGGACCTCGTCCAGGGCCCGTCGCCGAGCCGCGCCCA
CCCCGGATCCCGAGCGCATCCAGCGCCTGCGCCGGCTCATGGTGGTCAAGGAGGACACGGACGG
CACGGCCGGGTCGCGACGCCAGGGCCCGGGGCGCAGCAAGAAGGCACCCCGCAACGTGCTCACG
CGGATGCCCTTGCATGAGGGTAGCCCTCTGGGCGAGCTGCACCGCTGCATCCGAGAGGGGGTGA
AGGTGAACGTGCACATCCGCACTTTCAAGGGACTCCGCGGCGTCTGCACTGGCTTCCTCGTTGC
CTTCGACAAGTTCTGGAACATGGCCCTCACAGACGTGGATGAGACCTACCGTAAACCTGTCTTA
GGCAAAGCATACGAACGGGATTCTTCGCTGACTCTCACTAGGCTATTTGATCGGCTGAAACTCC
AAGATTCCAAAAAGGAAGCGGATTCCAAGTCTGCAGTGGAGGACTCCACCCTGTCTCGTTACTC
CCAGACATCTACTTGGAAGGTGGCTTCAGTGTGGGGACGAGGAGACACTGACCGAGGCTCACAC
AGGCGCTCCCGCTCCGTCCCTTCTTCCCTGCAGGCATCTGCAAGGGAGGAGTCCAGGTCTGAGC
TGTCAGGGAGGACTACACGGACAGAAGGGTCCAGTGTGGGAGGTACCTTCTCCAGGGCCACCAC
CCTTTCACGGGGCCAGTCCCGTAAGAAAAAGCGAAAGCCCAAGGTGGATTACCAGCAAGTGTTT
ACTCGACACATAAATCAGATTTTCATTCGAGGTGAGAATGTCCTGCTGGTTCATCTTGCACAGT
GAGCAGCTCAGCCCCACTTGACCTTTGGGTTTTAGAAATAAAGTGCATGAACTGTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006246151 ⟹ XP_006246213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	30,869,168 - 30,887,275 (-)	NCBI
mRatBN7.2	10	30,367,841 - 30,385,956 (-)	NCBI
Rnor_6.0	10	31,023,561 - 31,041,700 (-)	NCBI
Rnor_5.0	10	30,844,898 - 30,862,998 (-)	NCBI

Sequence:

show sequence

GCTGCGGCTGCGCAGTGCCGCCCTCTGGCGGCCCGGTTCCTTTCTCCCGCCCATCGGCTTCGGC
TTGCGGGCCTTTCAAACATGGAGGAGCGCGAGTGGGGGGCGAGGTCGGCTCGCGCCGGCAGCCC
AGCCAGCCCGCCCAGCCCGCGGCTGGACGTCAGCTCCTACAGCTTCGACCCGCTGCTGGCCCTG
TACGCGCCGCGCCTGCCGCCCATTCCTTACCCCAACGCTCCCTGCTTCAACAACGTGGCGGAGT
ACGAGAGCTTCCTGAAGGGCGGGCGCACCGGGCGCGGTCGAGCTCGGGGCACGGGAGAGCCGGC
CTCGGCGGGAACCTCCACCGGAACCTCCACGGGAGCCGGGACCTCGTCCAGGGCCCGTCGCCGA
GCCGCGCCCACCCCGGATCCCGAGCGCATCCAGCGCCTGCGCCGGCTCATGGTGGTCAAGGAGG
ACACGGACGGCACGGCCGGGTCGCGACGCCAGGGCCCGGGGCGCAGCAAGAAGGCACCCCGCAA
CGTGCTCACGCGGATGCCCTTGCATGAGGGTAGCCCTCTGGGCGAGCTGCACCGCTGCATCCGA
GAGGGGGTGAAGGTGAACGTGCACATCCGCACTTTCAAGGGACTCCGCGGCGTCTGCACTGGCT
TCCTCGTTGCCTTCGACAAGTTCTGGAACATGCTATTTGATCGGCTGAAACTCCAAGATTCCAA
AAAGGAAGCGGATTCCAAGTCTGCAGTGGAGGACTCCACCCTGTCTCGTTACTCCCAGACATCT
ACTTGGAAGGTGGCTTCAGTGTGGGGACGAGGAGACACTGACCGAGGCTCACACAGGCGCTCCC
GCTCCGTCCCTTCTTCCCTGCAGGCATCTGCAAGGGAGGAGTCCAGGTCTGAGCTGTCAGGGAG
GACTACACGGACAGAAGGGTCCAGTGTGGGAGGTACCTTCTCCAGGGCCACCACCCTTTCACGG
GGCCAGTCCCGTAAGAAAAAGCGAAAGCCCAAGGTGGATTACCAGCAAGTGTTTACTCGACACA
TAAATCAGATTTTCATTCGAGGTGAGAATGTCCTGCTGGTTCATCTTGCACAGTGAGCAGCTCA
GCCCCACTTGACCTTTGGGTTTTAGAAATAAAGTGCATGAACTGTTCCTATGCTATATCCTAGT
ATCCCAAACAGTGTGAGTCGAAGTGGTTCCCGCTGGTCCTGCCCATGCAGAGCACAGAGCTGGC
TCACCCTCTGGAAGGACAGGTCAGCAGTTCTAACCAGGCAACAGCCATTCACAGGACATGCTCT
GACGGGCTGCCACTGGCTGCTCCAGAGTCTCAAGTGTAAGCACTTTGCTTTGACTTAGGGTCCC
AGTACAAGTGGACTCCACTCCGTGGAAACCTCAGGAGTGTCTGAGAAGGAATAATTTCATTTCC
AAAGGCTAGCGCTCTGAGCACAATGAGTTTGATCTTACGATGATCGTGTTCGAGCCGTGTAAAT
TGCCCAAGATCCCGCAGCCATATCTTGGAACTGATCTTCTACATCATTCTCTCTTGATCAAGAA
ATGAAATTTTTTATCCTTTGAATATTAATAAGGTCTAGGAAAGTTACCAGCTTATGAAGGAGTT
AAGCTCAGCTAGGTGGTTGTTCCAAGCAGCAGTGGTAAGCTCTCTGCTCTGCCCCCTCATCCCC
TGGGAAGGCATGCAGAAGCTTGTCGCCCTCACCAGAGGTGGCCTCTGCACATGGCACACCAGAT
GGGACTGTCCCGAACTTGTGGCTTGTCCTCTCCGACTCCTGTGGCATGGTGCTAGTGCATGTGA
CCTGTGCTGTCACCCCATGTGTTATGTGTGACCTGTCCTGATGCGCCCTTCCTGTCTGACTTCA
GAGAGTTCTACATGAACTCAGTAATGCACATCTCTCTCACTGCTGGGAGTTGCCTTTCCAGGCG
GGCCTGGCCTTGTGTAGAAAGTCTCAGAATGGTGTCACCGAAAGAGGGGTCATACTTTATTCCC
TGTGTCAAGCCAGTGAGGTTCTTAGAAAGAAAGATGGGTGTGTCCTAAGGGCCCTTGACTCCCA
TTTATGCTTGAGTGTCAGGAATACCAAAGGACCCGGGTTGCTCCTACTTGAATTATATCAGCGT
ATGCTTTTCAGTCACTAGTACAGACTGGCCTGCATCTTGACATAGACTGTTAGGCACCATTGAC
TTACAAACTTTTGTTTATACTTGCTCTGTCTTAGATAACTTATGTTCAGAGGGAGAATGAGAAG
TAGCTAGTTAGTCCAAATGTATGTTTGAATAGAACATTTCCCCTGCCGGGTCTTTCAATAGCAT
TGGTAAGCCCTCTGAGAAGCAGGGTAAATCAAGTTTAGAGACTGGGACACTTGGTTCTTCTGTT
AGCTGGACCACTGCCTCATCAGACAATGAAAAGTCAGCAGACGTGCCTCAGTTTCCCCATCAGA
CACCTACCTCACCAGGGCACTGTGGCAGAGTTTCAGGAAGACATTTTACAGCCTCTAAGCATAT
CTAAGTGCCGTGAATACATTTCCTTATTCTAGAGTATAGCTCTGTAAAACTTCTTGTTCTGTGA
GTGAGGCAGGTGCTGTATAAGAAAGCGATCTTCCAGCTGTCATTTCTGGTCCTGTAGCCTCCAT
CAGAGGACTATGAGAGCTTCCTGGTCTGTCTCTCCTCTAGAAAGAAGCAGGAGTTCTCAGAGGA
ACACCTTCATCTAGGAGAAAGTGACTCTCTCCGCTGCTGCCCCACATCCCAGGCCTGCTTTTCA
AGGGTATCTGTTCTGGTACTGCAGGGAGAATATGCAGCTAAAAGCACAGATCCCAAAGGGGATT
TCTGGGCTTGTCTCTTCTCACTTTACCTGTTTTTATTTCCAGTTGTATCTACATTTAAAGGCAG
GGCAGGTGCACTGGAAGCTCTGGTAAAGACTCAAGCTCAAAGCTCTTTATCCTGTAGTCTAAAT
TCTCCTCGGCCTCCTGGGCCAGGTCTGTTGTTCAGTTGCTTTGCTCACCCATCAGTCTGGAGCG
CCTCTCAAGCCTTGCTCCCTGTGTGGCTCTGCACCCCCATCTGCCCTGTCCCCCTTAGGTAGAA
GCTAGAATGGATGCTCTTTCCCCGACTGTGTAGAGATGTGCAATCCAAAGGAATTGAGGGGTTT
CTGTCCATCCTAGTGAGCTCCTGGTGCCAACCTCATGTTAGCATACAGCTTCTCACATTTCTAT
AAGGTCTGATTTATAATTCCCCTCAACATGACAACTCTCTGTGAAAACTGTCTTTGAATTTGTG
TTCTAATTTGCGTAATTCGGACAATGATTCAGAAATGAACACTCTTTAGGAAATGTGCAGTTTT
GTGCAAAGCATGGCAATTATTTTTTAGAAAAGTCAATTTAATAAACTATTGCCTCTAGTTTTGG
AACAATTTTCAAAAATAAAGAAAAATAGGTCCTAATAATGTTCTGCTTCTCCAAATATCACAGA
TATCACAGGTCATCTGTGAGTCACTGTAGTGACTTGGGGGATGGGGAACTGTGCTGGGTGCTTC
ATGGTGGTCCCTGTGCTCTGTTCATGAGACCCTGAGTTCAGTCTCTGGCCTGGATGAATGAGTG
AGTCAATGAGTCACTGGCTGAAGTTTTCCTTCTGAGAAAAAAAGAACCCAGGAAAAGGGGTTGG
TGAGGTCACCTAGAAGATGCATCCCTTTCCACTAAGGAGTCGCACAATTCAAGAACGGAATAGA
ACCTCTTCACTTGTGTTCTGTGGGGGTTACAGTTCTCTTACGGATACACTTTACTTTTGAATAA
ATGGCTCTGATTGTTCAAACTAATTTCTAGCCATCTGAATAATTCACAGAATATAACTATTTTT
ATTTTTTTTTGAAACAGTCTCACTGTGTCTGCCTGTCTGGGCTGGAACTCACTAAGTAGACCAG
GCTAGTTTCAGACTCACAGATCTGCCTGCCATTGCTATAACTAAAGAGGTGTCCTACCACCCTT
TGACTCAGCCATTAATGTTACCAGCTTGGCCACAGTTCTTGTGCTCAGCTTGAAGAGAAATTAC
ATGTGGGCAAGTATTACCATCTGAACAGGCTGTTAAAGGTTCATGCTCAAATGTAAGGGAGACA
ACACACAGGACAGGACAGGGCAGGACAGGGCAGGACAGGGGCCCTGGGTGCTGTCCAAGAACTA
AGGAATACAACTTAAATAGAGAAAGGGAGCCTGGTTATACAGGCCCAGTCAGCCCATTGTACAG
AGGCCTAGATTTCTCCGTGTGTCTCGGTGGCTGGGTTGATGGAGTGGTCTGTGTGCTTCTGTCA
GTGCTTTTGCAGAAGCTGCTGGCTGTGCTCATACCACCAGGAATATCCTTGTGTTGGTCAAGTT
CAGACATGATCCATATAGGTCACAGGAAAGCCGGGGAGTGGGGGAAGGTTACATGTGGGAGTAC
TGTTTGAAAGAAGTATGCATTAAATGGGCAGAGTTAATGTAGAACCATTTCTGTGTCCACAAAG
CCGTCCTTATACTCCATATCAGTACAGCTGTCACCTGGGTTGTCTGTCTTAGTGTCTGGGAGGC
CTGAGGTTTCCCTTAGGACCAGCAGGTGGTTTGTGAAATGCTTAGCCAGTTAGCATCTGAGGCA
GGGATCTGAAGGAGTCTGTGTCTTGCTCTTTCTTTGCCTGCTGCCCATGAAGGCAGAGAGCTTT
CTGGTGTGGGTGCCCATGAACTCTTGCTGGGAGCTGCTGTCGGATCAGAAGCAGCCTCATCTGC
CTTGGCATAGAAAGAGTGCTCCTTCGGGCTGTCAGGTCATGAGCTCTGGGCTGCCCTTACTCCT
CATCAGCCTCACAGAGGTCTGTGCCGACACTTCTGCCCTTTAAGACAAAACAATAGACCCAGCA
TGAGTGGAAGTGGGTGTCTGTTTGCACCATTCCCGTGACAGCCATGCAGGCAAAATCATGAAAT
ACACTTGGTTCTGTAAATTGCTTCTTTAAATGTCCTGTAGATTTTTTCCTGTAAGAAAAAAATT
AAAAGTATTCAAAGACAGCTAGCTGTCACTGGTGCTCCCCCAAAGGGTTTCATCCCTTATGTGC
TTTTTATGAATGAAATGGTTGCGGTGCGAGAGTTAATGGAAGAAAGAGTCTGGTGGTATAGAGT
AGTTTGAGAGATGTCTTCATTTTTCTCTTCCTGCCCCGTATCTGAAATGCATGCAGCCTACTGT
CGGTAACCTTGTTCACCTGTATCTCTCTTGCCCAGAAGGCTTTCCTCAGTGTTTGGAAGTAAAA
CCATCTCCTCTGGCCCGTGTGGGAAAGGCTCTTAAGCCTGCTTTCTGGCAAGCCTTACTTTCTG
GCAAATTGGTGGATTTCAGAAAAGCCTTGGGGGGCTTGGGGATTTAGCTCAGTGGTAGAGCGCT
TGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCTCAGCTCCGGGGAAAAAAAAAATGTATAAAA
AGATAAGCCTTGGGCTCCTGTCACGGTTCTCTGATGAGGGGTTGGGCCTCCTTACCCCGCCAAC
GTCTTGAGTATTTTTCAAATGTCTGTCATTTCTCTTGCACTTTCCTAATAAAAGTGAAAGCCCT
CTGTCAAGAAAAGGGGGCAAGAAAACTCAGCAAACCTCAGACGCTTGAGGTCTGTAAGCTGCAG
CGTCCTGGCTCCCTGAGAACACTGTCTGCAAATACGGGCACCCCCAGGGAAGGCTGGGAGTTTG
GTTCCTGGCAGCCACTTCTGATTGAGTCCTTGGGAGCAAATGTCTGATGCTGTATTTTCAGAAC
TGTGAGGAGATGACTGGGAACTCTTGGGGTTGCTTCAGGTGATTGATCGCCTGATTTCAGAGCA
GCTGGTCCCCTTTTCTGTTTTCCCCACAGGAAAGCAAGACAGCCACGCCCTAAAACACGCACAC
GTGTAATCCCTCAGGCAGGTCCCTGTGAGTTCCAGGCCAGTCTAAGCTACAGAGGGAAAGTGTC
TCAAAAAACTAAAATGACAGCAACCAAAAGTAACTTGCTTATTCAGTACAGACATGTGAAGACT
CTGTCTGGCAACTGTGTCCCCTCTGCACCGTGACTCCGTGATTTTGTGGGCAGGGCTGAAGCCG
GATGACTCTAGGAGTGCTGATACGGCAAGGGATATAAGAACCCCCGACTAACCTCATCTATCAC
CCCTTGTCGTTAGGTTTGGGACCCTTCTCGTTGAGGGGCCTGCTGCTCGACCTTTGCAATGTTC
TGCTTTTGATATGTGTCAGATGGGAGTCTGGAAACTATAATAAATATGATTGTATCCATTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001166855	(Get FASTA)	NCBI Sequence Viewer
	XP_006246213	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58837	(Get FASTA)	NCBI Sequence Viewer
	EDM04158	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007267
	ENSRNOP00000007267.4
	ENSRNOP00000111519
	ENSRNOP00000111519.1

RefSeq Acc Id:

NP_001166855 ⟸ NM_001173384

- UniProtKB:

B0BNI4 (UniProtKB/TrEMBL), A6HDQ3 (UniProtKB/TrEMBL), F7FQ27 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEREWGARSARAGSPASPPSPRLDVSSYSFDPLLALYAPRLPPIPYPNAPCFNNVAEYESFLK
GGRTGRGRARGTGEPASAGTSTGTSTGAGTSSRARRRAAPTPDPERIQRLRRLMVVKEDTDGTA
GSRRQGPGRSKKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFD
KFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSKKEADSKSAVEDSTLSRYSQT
STWKVASVWGRGDTDRGSHRRSRSVPSSLQASAREESRSELSGRTTRTEGSSVGGTFSRATTLS
RGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ

hide sequence

RefSeq Acc Id:

XP_006246213 ⟸ XM_006246151

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEEREWGARSARAGSPASPPSPRLDVSSYSFDPLLALYAPRLPPIPYPNAPCFNNVAEYESFLK
GGRTGRGRARGTGEPASAGTSTGTSTGAGTSSRARRRAAPTPDPERIQRLRRLMVVKEDTDGTA
GSRRQGPGRSKKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFD
KFWNMLFDRLKLQDSKKEADSKSAVEDSTLSRYSQTSTWKVASVWGRGDTDRGSHRRSRSVPSS
LQASAREESRSELSGRTTRTEGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFI
RGENVLLVHLAQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000007267 ⟸ ENSRNOT00000007267

Ensembl Acc Id:

ENSRNOP00000111519 ⟸ ENSRNOT00000147861

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BNI4-F1-model_v2	AlphaFold	B0BNI4	1-360	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697121

Promoter ID:

EPDNEW_R7646

Type:

multiple initiation site

Name:

Lsm11_1

Description:

LSM11, U7 small nuclear RNA associated

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	31,041,628 - 31,041,688	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565523	AgrOrtholog
BioCyc Gene	G2FUF-25382	BioCyc
Ensembl Genes	ENSRNOG00000005450	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007267	ENTREZGENE
	ENSRNOT00000007267.8	UniProtKB/TrEMBL
	ENSRNOT00000147861	ENTREZGENE
	ENSRNOT00000147861.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.100	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7385359	IMAGE-MGC_LOAD
InterPro	IPR047575	UniProtKB/TrEMBL
	Lsm11	UniProtKB/TrEMBL
	Lsm11_M	UniProtKB/TrEMBL
	LSM_dom_euk/arc	UniProtKB/TrEMBL
	LSM_related_domain	UniProtKB/TrEMBL
KEGG Report	rno:501688	UniProtKB/TrEMBL
MGC_CLONE	MGC:188298	IMAGE-MGC_LOAD
NCBI Gene	501688	ENTREZGENE
PANTHER	PTHR21415	UniProtKB/TrEMBL
	U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11	UniProtKB/TrEMBL
PhenoGen	Lsm11	PhenoGen
PROSITE	PS52002	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005450	RatGTEx
SMART	SM00651	UniProtKB/TrEMBL
Superfamily-SCOP	Sm_like_riboprot	UniProtKB/TrEMBL
UniProt	A0ABK0LKS5_RAT	UniProtKB/TrEMBL
	A6HDQ3	ENTREZGENE, UniProtKB/TrEMBL
	B0BNI4	ENTREZGENE
	F7FQ27	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B0BNI4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-18	Lsm11	LSM11, U7 small nuclear RNA associated	Lsm11	U7 snRNP-specific Sm-like protein LSM11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Lsm11	U7 snRNP-specific Sm-like protein LSM11	RGD1565523_predicted	similar to U7 snRNA-associated Sm-like protein Lsm11 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565523_predicted	similar to U7 snRNA-associated Sm-like protein Lsm11 (predicted)	LOC501688	similar to U7 snRNA-associated Sm-like protein Lsm11	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501688	similar to U7 snRNA-associated Sm-like protein Lsm11			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM