Septin12 (septin 12) - Rat Genome Database

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Gene: Septin12 (septin 12) Rattus norvegicus
Analyze
Symbol: Septin12
Name: septin 12
RGD ID: 1565511
Description: Predicted to enable several functions, including GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in cytoskeleton-dependent cytokinesis and intracellular protein localization. Predicted to be located in several cellular components, including midbody; perinuclear region of cytoplasm; and sperm annulus. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Human ortholog(s) of this gene implicated in spermatogenic failure 10. Orthologous to human SEPTIN12 (septin 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC363542; Sept12; septin-12; similar to Hypothetical protein FLJ25410
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,087,354 - 11,097,036 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1011,086,863 - 11,097,034 (+)EnsemblGRCr8
mRatBN7.21010,580,900 - 10,590,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,581,008 - 10,590,581 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1015,289,092 - 15,298,675 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,777,915 - 14,787,498 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,447,225 - 10,456,795 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,774,702 - 10,784,276 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,774,639 - 10,784,277 (+)Ensemblrn6Rnor6.0
Rnor_5.0109,541,597 - 9,551,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41010,692,377 - 10,707,562 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera109,545,217 - 9,554,814 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell division site  (IBA)
cytoplasm  (IEA)
cytoskeleton  (IEA)
microtubule cytoskeleton  (IBA,IEA,ISO)
midbody  (IEA,ISO,ISS)
motile cilium  (IEA)
perinuclear region of cytoplasm  (IEA,ISO,ISS)
septin complex  (IBA,IEA,ISO)
septin ring  (IBA)
sperm annulus  (IEA,ISO)
spindle  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Sept12 is a component of the mammalian sperm tail annulus. Steels JD, etal., Cell Motil Cytoskeleton. 2007 Oct;64(10):794-807.
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18047794   PMID:18443421   PMID:22275165   PMID:25588830  


Genomics

Comparative Map Data
Septin12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,087,354 - 11,097,036 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1011,086,863 - 11,097,034 (+)EnsemblGRCr8
mRatBN7.21010,580,900 - 10,590,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,581,008 - 10,590,581 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1015,289,092 - 15,298,675 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,777,915 - 14,787,498 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,447,225 - 10,456,795 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,774,702 - 10,784,276 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,774,639 - 10,784,277 (+)Ensemblrn6Rnor6.0
Rnor_5.0109,541,597 - 9,551,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41010,692,377 - 10,707,562 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera109,545,217 - 9,554,814 (+)NCBICelera
Cytogenetic Map10q12NCBI
SEPTIN12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,777,606 - 4,791,828 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,777,606 - 4,788,398 (-)Ensemblhg38GRCh38
GRCh37164,827,607 - 4,838,346 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,767,675 - 4,778,348 (-)NCBIBuild 36Build 36hg18NCBI36
Celera165,036,441 - 5,047,169 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,793,813 - 4,804,752 (-)NCBIHuRef
CHM1_1164,828,375 - 4,839,366 (-)NCBICHM1_1
T2T-CHM13v2.0164,807,061 - 4,821,315 (-)NCBIT2T-CHM13v2.0
Septin12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,804,722 - 4,815,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,804,722 - 4,815,716 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38164,986,858 - 4,997,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,986,858 - 4,997,852 (-)Ensemblmm10GRCm38
MGSCv37164,988,178 - 4,997,872 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36164,903,406 - 4,913,100 (-)NCBIMGSCv36mm8
Celera165,619,651 - 5,629,157 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.49NCBI
Septin12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,705,034 - 12,719,140 (+)Ensembl
ChiLan1.0NW_00495544212,704,546 - 12,717,905 (+)NCBIChiLan1.0ChiLan1.0
SEPTIN12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,304,771 - 5,319,124 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,094,920 - 9,109,246 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,701,796 - 3,713,170 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,867,208 - 4,877,772 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,867,217 - 4,877,772 (-)EnsemblpanPan2panpan1.1
SEPTIN12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,630,038 - 36,641,920 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,630,117 - 36,641,924 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha638,022,271 - 38,034,129 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0636,832,990 - 36,844,902 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl636,833,088 - 36,844,906 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,627,017 - 36,639,138 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,519,918 - 36,531,836 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0636,922,144 - 36,934,271 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Septin12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,899,316 - 106,908,352 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365304,744,818 - 4,750,521 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365304,744,772 - 4,750,495 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPT12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,606,716 - 37,627,196 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1337,604,669 - 37,617,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,677,098 - 38,688,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,448,098 - 4,465,389 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606826,201,456 - 26,213,054 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,633,154 - 2,644,880 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248242,633,025 - 2,645,557 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Septin12
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1916,908,290 - 16,918,494 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Septin12
51 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:50
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000061208
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH140311  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22013,338,298 - 13,338,484 (+)MAPPERmRatBN7.2
Rnor_6.02014,287,786 - 14,287,971NCBIRnor6.0
Rnor_5.02016,471,060 - 16,471,245UniSTSRnor5.0
RGSC_v3.42013,839,044 - 13,839,229UniSTSRGSC3.4
RGSC_v3.41010,701,451 - 10,701,636UniSTSRGSC3.4
Celera2014,823,755 - 14,823,940UniSTS
RH 3.4 Map20154.26UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 5 5 41 37 41 20 14 20 6 105 35 1 27 35 50 21 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000061208   ⟹   ENSRNOP00000057921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1011,086,863 - 11,097,034 (+)Ensembl
mRatBN7.2 Ensembl1010,581,008 - 10,590,581 (+)Ensembl
Rnor_6.0 Ensembl1010,774,639 - 10,784,277 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111695   ⟹   ENSRNOP00000088547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1011,087,423 - 11,097,021 (+)Ensembl
mRatBN7.2 Ensembl1010,581,008 - 10,590,576 (+)Ensembl
RefSeq Acc Id: NM_001100865   ⟹   NP_001094335
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,087,462 - 11,097,036 (+)NCBI
mRatBN7.21010,581,008 - 10,590,582 (+)NCBI
Rnor_6.01010,774,702 - 10,784,276 (+)NCBI
Rnor_5.0109,541,597 - 9,551,204 (+)NCBI
Celera109,545,217 - 9,554,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086446   ⟹   XP_038942374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,087,354 - 11,096,825 (+)NCBI
mRatBN7.21010,580,900 - 10,590,372 (+)NCBI
RefSeq Acc Id: XM_039086447   ⟹   XP_038942375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,087,354 - 11,096,825 (+)NCBI
mRatBN7.21010,580,900 - 10,590,372 (+)NCBI
RefSeq Acc Id: XM_039086448   ⟹   XP_038942376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,087,354 - 11,097,027 (+)NCBI
mRatBN7.21010,580,900 - 10,590,395 (+)NCBI
RefSeq Acc Id: NP_001094335   ⟸   NM_001100865
- UniProtKB: Q4V8G5 (UniProtKB/Swiss-Prot),   A6K4P8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057921   ⟸   ENSRNOT00000061208
RefSeq Acc Id: XP_038942376   ⟸   XM_039086448
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A6R7 (UniProtKB/TrEMBL),   A6K4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942374   ⟸   XM_039086446
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038942375   ⟸   XM_039086447
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000088547   ⟸   ENSRNOT00000111695
Protein Domains
Septin-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V8G5-F1-model_v2 AlphaFold Q4V8G5 1-356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696966
Promoter ID:EPDNEW_R7491
Type:initiation region
Name:Sept12_1
Description:septin 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01010,774,682 - 10,774,742EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565511 AgrOrtholog
BioCyc Gene G2FUF-26055 BioCyc
Ensembl Genes ENSRNOG00000003137 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000061208 ENTREZGENE
  ENSRNOT00000061208.3 UniProtKB/Swiss-Prot
  ENSRNOT00000111695 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7453644 IMAGE-MGC_LOAD
InterPro G_SEPTIN_dom UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Septin UniProtKB/Swiss-Prot
KEGG Report rno:363542 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114446 IMAGE-MGC_LOAD
NCBI Gene 363542 ENTREZGENE
PANTHER SEPTIN UniProtKB/Swiss-Prot
Pfam Septin UniProtKB/Swiss-Prot
PhenoGen Septin12 PhenoGen
PIRSF Septin UniProtKB/Swiss-Prot
PROSITE G_SEPTIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003137 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I6A6R7 ENTREZGENE, UniProtKB/TrEMBL
  A6K4P8 ENTREZGENE, UniProtKB/TrEMBL
  A6K4P9 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8G5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Septin12  septin 12  Sept12  septin 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Sept12  septin 12  LOC363542  similar to Hypothetical protein FLJ25410  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC363542  similar to Hypothetical protein FLJ25410      Symbol and Name status set to provisional 70820 PROVISIONAL