Gene: C16h13orf46 (similar to human chromosome 13 open reading frame 46) Rattus norvegicus
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Symbol:
C16h13orf46
Name:
similar to human chromosome 13 open reading frame 46
RGD ID:
1565445
Description:
Orthologous to human C13orf46 (chromosome 13 open reading frame 46); INTERACTS WITH aristolochic acid A (ortholog); Dibutyl phosphate (ortholog); Licochalcone B (ortholog).
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC290876; LOC290876; MGC116066; similar to RIKEN cDNA 1700029H14; uncharacterized protein C13orf46 homolog; uncharacterized protein LOC290876
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 82,677,041 - 82,689,807 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 16 82,677,641 - 82,689,806 (+) Ensembl GRCr8 mRatBN7.2 16 75,974,501 - 75,987,629 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 75,975,463 - 75,987,628 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 16 81,256,071 - 81,268,237 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 84,709,042 - 84,721,208 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 79,957,804 - 79,969,974 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 81,301,810 - 81,315,504 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 81,301,810 - 81,313,976 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 16 80,790,212 - 80,802,877 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 16 80,830,334 - 80,842,500 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 16 73,783,575 - 73,795,739 (+) NCBI Celera Cytogenetic Map 16 q12.5 NCBI
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References
Additional References at PubMed
Genomics
Comparative Map Data
C16h13orf46 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 82,677,041 - 82,689,807 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 16 82,677,641 - 82,689,806 (+) Ensembl GRCr8 mRatBN7.2 16 75,974,501 - 75,987,629 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 75,975,463 - 75,987,628 (+) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 16 81,256,071 - 81,268,237 (+) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 84,709,042 - 84,721,208 (+) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 79,957,804 - 79,969,974 (+) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 81,301,810 - 81,315,504 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 81,301,810 - 81,313,976 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 16 80,790,212 - 80,802,877 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 16 80,830,334 - 80,842,500 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 16 73,783,575 - 73,795,739 (+) NCBI Celera Cytogenetic Map 16 q12.5 NCBI
C13orf46 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 13 113,926,514 - 113,974,076 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 13 113,953,705 - 113,974,076 (-) Ensembl hg38 GRCh38 GRCh37 13 114,743,219 - 114,743,487 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 13 q34 NCBI HuRef 13 94,772,869 - 94,780,825 (+) NCBI HuRef T2T-CHM13v2.0 13 113,137,335 - 113,186,857 (-) NCBI T2T-CHM13v2.0
1700029H14Rik (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 13,600,722 - 13,612,555 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 13,600,733 - 13,612,461 (-) Ensembl GRCm39 Ensembl GRCm39 GRCm38 8 13,550,722 - 13,562,555 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 13,550,733 - 13,562,461 (-) Ensembl mm10 GRCm38 MGSCv37 8 13,550,733 - 13,562,448 (-) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 8 13,550,710 - 13,562,382 (-) NCBI MGSCv36 mm8 Celera 8 13,717,555 - 13,729,266 (-) NCBI Celera Cytogenetic Map 8 A1.1 NCBI cM Map 8 6.26 NCBI
CUNH13orf46 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955404 227,623 - 237,174 (+) Ensembl ChiLan1.0 NW_004955404 227,635 - 237,264 (+) NCBI ChiLan1.0 ChiLan1.0
LOC100988799 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 14 115,428,670 - 115,447,803 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 13 114,131,018 - 114,141,106 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 13 95,013,254 - 95,032,741 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 13 114,095,930 - 114,116,686 (-) NCBI PanPan1.1 PanPan1.1 panPan2
C22H13orf46 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 22 61,082,388 - 61,091,176 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 22 61,082,405 - 61,091,041 (-) Ensembl canFam3 CanFam3.1 Dog10K_Boxer_Tasha 22 60,791,329 - 60,802,775 (-) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 22 61,769,035 - 61,778,267 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 22 61,769,491 - 61,778,134 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 22 61,204,495 - 61,215,773 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 22 61,211,737 - 61,223,042 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 22 61,238,040 - 61,249,454 (-) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
CUNH13orf46 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
C11H13orf46 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 11 78,942,261 - 78,949,344 (-) Ensembl susScr11 Sscrofa11.1 Sscrofa11.1 11 78,941,204 - 78,946,314 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 11 86,667,640 - 86,668,718 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
C3H13orf46 (Chlorocebus sabaeus - green monkey)
CUNH13orf46 (Heterocephalus glaber - naked mole-rat)
C13H13orf46 (Rattus rattus - black rat)
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 101 Count of miRNA genes: 73 Interacting mature miRNAs: 88 Transcripts: ENSRNOT00000057803 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction