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Gene: Synpo2l (synaptopodin 2-like) Rattus norvegicus

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Symbol:

Synpo2l

Name:

synaptopodin 2-like

RGD ID:

1565434

Description:

Predicted to enable actin binding activity. Predicted to be involved in several processes, including positive regulation of Rho protein signal transduction; positive regulation of stress fiber assembly; and sarcomere organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in Z disc; actin cytoskeleton; and nucleus. Orthologous to human SYNPO2L (synaptopodin 2 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305675; RGD1565434; similar to synaptopodin 2-like; synaptopodin 2-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYNPO2L (synaptopodin 2 like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Synpo2l (synaptopodin 2-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Synpo2l (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYNPO2L (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYNPO2L (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Synpo2l (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYNPO2L (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYNPO2L (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Synpo2l (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Synpo2l (synaptopodin 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SYNPO2L (synaptopodin 2 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Synpo2l (synaptopodin 2-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	synpo2lb (synaptopodin 2-like b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	synpo2la (synaptopodin 2-like a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1674	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	synpo2l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	synpo2l	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,681,224 - 3,690,673 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	3,681,104 - 3,690,673 (+)	Ensembl				GRCr8
mRatBN7.2	15	3,631,974 - 3,641,429 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,631,834 - 3,641,429 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	3,642,161 - 3,651,606 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,028,637 - 5,038,079 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,640,972 - 3,650,415 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,064,706 - 4,074,151 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,064,706 - 4,072,635 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	8,165,795 - 8,175,373 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	3,857,420 - 3,865,349 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	952,778 - 962,215 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aldehydo-D-glucose (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

cantharidin (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

D-glucose (ISO)

diquat (ISO)

doxorubicin (ISO)

fucoxanthin (ISO)

gentamycin (EXP)

glucose (ISO)

manganese(II) chloride (EXP)

N-methyl-4-phenylpyridinium (EXP)

naled (ISO)

naphthalene (ISO)

ozone (EXP)

perfluorooctanoic acid (EXP)

progesterone (ISO)

sunitinib (ISO)

testosterone (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heart morphogenesis (ISO)

positive regulation of actin filament bundle assembly (IBA)

positive regulation of Rho protein signal transduction (ISO)

positive regulation of stress fiber assembly (ISO)

sarcomere organization (ISO)

Cellular Component

actin cytoskeleton (IBA)

cytoplasm (IEA)

nucleus (IBA,ISO)

organelle (IEA)

Z disc (IBA,ISO)

Molecular Function

actin binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20215401	PMID:29206857	PMID:35352799

Genomics

Comparative Map Data

Synpo2l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,681,224 - 3,690,673 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	3,681,104 - 3,690,673 (+)	Ensembl				GRCr8
mRatBN7.2	15	3,631,974 - 3,641,429 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,631,834 - 3,641,429 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	3,642,161 - 3,651,606 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,028,637 - 5,038,079 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,640,972 - 3,650,415 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,064,706 - 4,074,151 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,064,706 - 4,072,635 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	8,165,795 - 8,175,373 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	3,857,420 - 3,865,349 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	952,778 - 962,215 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

SYNPO2L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,644,886 - 73,656,029 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,644,881 - 73,663,803 (-)	Ensembl			hg38	GRCh38
GRCh37	10	75,404,644 - 75,415,787 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	75,075,296 - 75,080,793 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	75,075,295 - 75,080,793	NCBI
Celera	10	68,690,238 - 68,701,428 (-)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	69,398,153 - 69,409,343 (-)	NCBI		HuRef
CHM1_1	10	75,686,395 - 75,697,582 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,516,308 - 74,527,453 (-)	NCBI		T2T-CHM13v2.0

Synpo2l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,709,013 - 20,718,422 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,709,014 - 20,718,422 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	20,658,945 - 20,668,354 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,658,946 - 20,668,354 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	21,478,640 - 21,487,528 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,447,970 - 19,456,858 (-)	NCBI		MGSCv36	mm8
Celera	14	17,042,162 - 17,051,061 (-)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.53	NCBI

Synpo2l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	18,177,867 - 18,188,983 (+)	Ensembl
ChiLan1.0	NW_004955437	18,177,867 - 18,186,772 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNPO2L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,820,535 - 85,831,913 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,825,857 - 85,840,508 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	70,192,289 - 70,204,008 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	72,648,952 - 72,660,184 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	72,648,952 - 72,660,184 (-)	Ensembl			panPan2	panpan1.1

SYNPO2L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	24,168,030 - 24,177,710 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	24,169,707 - 24,177,813 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	24,305,570 - 24,315,236 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	24,448,146 - 24,457,808 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	24,448,151 - 24,464,766 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	24,345,386 - 24,355,030 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,545,915 - 24,555,569 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,900,946 - 24,910,606 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Synpo2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	56,913,572 - 56,925,652 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,407,754 - 5,418,368 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,407,767 - 5,418,368 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNPO2L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	76,456,168 - 76,466,641 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	76,456,170 - 76,466,661 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,583,031 - 82,593,284 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNPO2L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	57,629,836 - 57,650,458 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	57,631,111 - 57,646,400 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	18,212,812 - 18,223,759 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Synpo2l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	7,247,838 - 7,255,815 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	7,245,825 - 7,255,926 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Synpo2l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	90,466,188 - 90,473,974 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Synpo2l
19 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	44
Count of miRNA genes:	40
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000011956
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
1300142	Bp191	Blood pressure QTL 191	3.14		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	15	1	15177511	Rat

Markers in Region

Synpo2l

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	3,684,944 - 3,685,095 (+)	Marker Load Pipeline
mRatBN7.2	15	3,635,694 - 3,635,844 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,068,427 - 4,068,576	NCBI	Rnor6.0
Rnor_5.0	15	8,169,645 - 8,169,794	UniSTS	Rnor5.0
RGSC_v3.4	15	3,861,141 - 3,861,290	UniSTS	RGSC3.4
Celera	15	958,345 - 958,494	UniSTS
Cytogenetic Map	15	p16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	12	67	150	72	71	40	39	40	6	276	139	11	128	79	92	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001305138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001305139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011956 ⟹ ENSRNOP00000011956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	3,681,104 - 3,690,673 (+)	Ensembl
mRatBN7.2 Ensembl	15	3,631,834 - 3,641,429 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,064,706 - 4,072,635 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118985 ⟹ ENSRNOP00000081435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	3,681,120 - 3,690,673 (+)	Ensembl
mRatBN7.2 Ensembl	15	3,635,667 - 3,641,429 (+)	Ensembl

RefSeq Acc Id:

NM_001305138 ⟹ NP_001292067

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,681,224 - 3,690,673 (+)	NCBI
mRatBN7.2	15	3,631,974 - 3,641,429 (+)	NCBI
Rnor_6.0	15	4,064,706 - 4,074,151 (+)	NCBI
Celera	15	952,778 - 962,215 (-)	NCBI

Sequence:

show sequence

ATGGGTGCTGAGGAGGAGGTGCAGGTCACATTAGCAGGGGGAGCACCCTGGGGCTTCCGGCTTC
AAGGGGGGGCCGAACAGAGGAAACCTTTACAGGTATCTAAGATCCGAAGACGCAGCCAGGCCGG
CAGATCAGGACTCCGGGAGAGGGACCAGCTCTTATCGATCAACGGGGTTTCTTGCACCGACTTC
TCCCATGCCAGTGCCATGACCCTCATCGATGCCTCAGGGCATCAGCTTGTCCTTACTGTGAGGA
GGGTAGCAGAGGAAGGGTCTGTGAGATCTCCGTCTCCAGGAGAGCTTCAGATGCTGTCACCCTT
ATCTCCATTGAGTCCTGAGCCCCCGGGTGCTCCTGTCACCCAAGCTCCTCAGCCAGGGAGCCTT
CGATCACCCCCTGACAGTGAGGCTTACTATGGAGAGACAGACAGTGATGTGGATGGCCCTGCCA
CACATGAGAAGCCACGCAGAACCCGCCGCCGAGGTCCTCCAAGGCCTTCCCTTCCAGGAGCTCC
ACCTGATGAGGTGTACCTGTCTGACAGCCCCGCAGAACCAGCGCCTGTTAAAACTGGCTCTCCC
AGCCAGGGTGACAGCCGTGTAAGCTCCCCATCTTGGGAGGAAGGGTCAGCCCTTCAGCCACCAC
CAGCAGAGGCCCTTCTGTTACCCCATGGTCCACTCCGGCCTGGTCCTCATCTCATCCCTATGGT
GGGCCCTGTCCCCCACCCAGTGGCAGAAGATCTCACTACCACCTATACCCAGAAGGCCAAGCAA
GCCAAACTGCAACGCGCGGAAAGCCTCCAAGAGAAGAGTGTGAAGGAGGCCAAGACCAAATGCC
GGACCATTGCATCCCTACTGACGGCAGCCCCCAACCCTCACTCCAAGGGGGTGCTTATGTTTAA
GAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAGTGAGTTTCGGGGCTGCAGCTGGGACAGGA
ACAGAGGAGGAGGAGGACGGCATCCCCCCAACGAGTGAGTCGGAGCTGGACGAGGAGGCCTTCT
CAGATGCCCGCAGCCTTACTAATCAATCCGACTGGGACAGCCCTTATCTAGACATGGAGCTGGC
TAGGGCTGGCTCAGGCATAGCAGAGAGTCAGAGCTCTGGACTGGGAGGACAGCTAAGTGAGGTC
TCTGGCCGAGGGGTACAGCTCTTTGAACAGCAGCGCCAAAGGGTAGCCTCCAGCTCCCAGGAGC
TGGCTCAGGTGGGCCCAGCAGCCATGCTTAATGGGCAGAGTCTGCAGTCCCCACCTCGAGCTCA
GAGTGCTCCCCCAGAGGCAGCGGTGCTTCCACTCAGCCCTTTGTCAGCCCCTGCAGCCAGCCCT
AGCCCCTTTCAGGATGGTGGAGCCCCCAGCCCTGCGCCAAGTATCTTTAACAGGTCAGCGAGAC
CTTTTACCCCAGGTTTACCAGGGCAACGGTCAGGCACCACCTCAGTGATTTTCCGACCCGTAGC
CCCTAAGAAGGTTAATGAGGCCTTGGGGGGCACTAGCCCCGCCCCGTCCCCCTTCGCAGCTTCT
CTACAGGGGCCCACCCCTCTGCCCAGCTTCACCACTGTGGTGCCCAACCGCACGCCGGTCTCTG
GAACCTCCAGCAGCACCCAACGCTCCTCCGGTCCTGTGACCGCTACCAGCTCCTTGTACATCCC
AGCCCCGAGCCGGCCCGTTACACCAGGAGGTGCCCCAGAGCCTCCCACTCCTCCTAGCGCTGCT
GCCATGACCTCCACTGCTTCCATATTCTTGTCCACTCCTCTGAGAAACTCTGCGCGCCCGGAGG
CACCCGGCACGGCGGCCCCCGAGCCTGCCAGCGCTCGGGAGCAGCGCATCTCTGTGCCGGCTGC
CCGCACCGGCATCCTGCAGGAGGCTCGGCGCCGGGGAACCCGCAAACAGATGTTCCGGCCTGGA
AAGGAAGAGACGAAGAACTCGCCCAACCCCGAGCTGCTATCGCTGGTACAGAACCTGGATGAAA
AACCTCGGGCGGGCGGTGCGGAATCTGGTCCGGAGGAGGACGCTTTAAGCCTCGGAGCAGAAGC
CTGTAACTTCATGCAGCCACTAGGGGGCAGGAGTTACAAGACCCTGTCTCAAGTGTCACCGAAA
ACCCCACCTCCAATGGCTCCCAAAACCCCACCCCCTATGACGCCTAAGACTCCACCCCCTGTGG
CTCCTAAACCCGGGTCTCGAGGGCTCCCTGACGGGCTAGTGAATGGATCGACCTCTATGGTTGG
GATTCCTGAGCTCCCAAGGCTGCAGGGGAGGGGTGGGGAGCTATTTGCCAAACGGCAGAGCCGT
GCCGACCGGTACGTGGTGGAAGCTACACCTGGCTCTAGCCTTAATCCAGGCCTTCGCCCTAGAA
GTCCTTCTCCCACACCCTCACTGCCCCCATCCTGGAAATACTCACCCAACATCCGTGCCCCACC
TCCTATTGCTTACAACCCACTTCTCTCACCCTTTTTCCCTCAGGCTGCCCGAACTCTCCCCAAT
AAGGCTCAATCCCAGGGACCTCGGGCGACCCCTAAGCAGGGTATCAAGGCCCTGGATTTCATGC
GGCATCAGCCATACCAACTTAAAACTGCCATGTTTTGTTTTGACGAGGGTCCTTCAACTCCTGC
CTCCACTTCAGGGCCTCCCAAAACTGCCCGAGTCCAGGAGATCCGCAGATTTTCCACTCCGGCG
CCCCAACCCACTGCAGAACCCTTGGCTCCCACTGTGCTTGCCCCCAGAGCGGCTACCACCTTGG
ACGAGCCCATTTGGAGGGCAGAGTTGGCCTCATCCCCTGTCCCTAACCCGGACCATCTAGAGTC
TCTCAGGAGCTTTGCGGCCACTCCCACTTCCTGCGGCTTCCAAGTAGCCAGGCCGCGGTTCTCA
GCCACCAGAACAGGGTTGCAGGCTCATGTCTGGAGACCTGGGGCAGGGCACCACTGAGCAGGGA
ATAGGTCCCAGGACCAAGTAATGGAACTTAGAGTCCCCAAAGTCTCTCTCTTCTGCTTTGTCCT
ACCGGCCTCCCGTCCCCCGTCCCCCCCCCTCCCCCCCGCATCTGAGTCTGACTGCCCCTAGCCA
GAGTGCGTTCCCCTCAGCTTCCTCCCTGCTGGTGCTTTTAAGCCCCTCATCTCTGCTTTGGAAT
CTTCTCTAGATGTCCTTGCCTGTCAGGCTTCTCTACCCAGAAGCCTCAGCAGATTTCTGCTTTT
GTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGTAAAAAGCACACTGTAAA
GTGACCACTGAGAGCTCAGGCAAAATGCTCACTCGCTCTCAGGCAAGCAACTAAGGGTCTGCAC
TGTGGCTTGATCCCCTCTACCCTCCATACTCCTCACTCCGCTTTCCCTAGGTTAGTTGCCATAC
GCCTAAGGGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT
GTGTGTGTGTGTGTGTGTGTATGCGCGCGTGCTTTCACAAATGTGTGTGATTAGGCTCTGCTCT
AGAAAGGCATCAAATACATATACATGTGTGCTTCTCTTGAGGCAAAGGACAAGACAAGAGGAGT
GTTTTCACCTACTGGAAGGGTCAGATGGCTTCATAAAGAATCCTGTGGGGAACAAGAGCTACTG
CAGAAAAGCTCCTGAGAGAGGAGTATCTGTAGCATGGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCACAGCATCTTGTGAAAT
TAACAAGTCTGACAAGACTGGGAGGCAAGGACACTTTTCATGGGTTTGAGTTATACAAGGTAGA
CCCAGAATAAGACTAAGAATTCTATTTCCTTGGATTAAAGGAAGTTAGCAACCAGGGCCCTGTG
CTGGGCACATCAGAATCCAGAAAGTAAAAAAGAACATTTCTTCTGAACTGCTTAATGAGTGTAA
GATAGAAAGGATGGTGAATAGAGCCAGAGTGGATGGGGAGAACGAGGCAAAAGCCAGGAACGAG
GCTGGAATGAGTGAAAGTGAACAAGGGGGAGAGTAAAGTTGGCCAACATGTGTGAGGGGGTCTG
GGAACTTCTGAGCTGGGGAGAACACATTTGTTAGAGCAAAGGCGTGAGCACATGCAGTGGCTGT
GTTACCTCCTGTGAATCTGACCTTCCTTCCACCCTTCTGGAGCTTATCCCGATGACCTGGGAAA
CCAGGGAGACACTGAGCCCAAACCTCTTGTTGTCCCACCCTACCTGTAGAAGCCCAGCTCTTTG
CAGCTTCAGGCCCTGTGTCTGATCCCAGAAGGATAAGGACTATCCTCCCATGAAGACCACCATC
AGTTATGGTTGTTGTTTGGCCTGGAAACCAATCTTTTCCTTTGCAATATTGGGTGTCACAATTC
TTTGGTTTGTGCACAAGAATAAACGTATGCTCACAAC

hide sequence

RefSeq Acc Id:

NM_001305139 ⟹ NP_001292068

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,685,010 - 3,690,673 (+)	NCBI
mRatBN7.2	15	3,635,760 - 3,641,429 (+)	NCBI
Rnor_6.0	15	4,068,492 - 4,074,151 (+)	NCBI
Celera	15	952,778 - 958,429 (-)	NCBI

Sequence:

show sequence

ATGGAGACCATCAGCCAAGAGCCCCTCAGCCAAGCCAGCTGTGACAAAGACCCAGCTCCTGAGC
TGCAAGACCCGTTCTATGCAGAACTGCAACGCGCGGAAAGCCTCCAAGAGAAGAGTGTGAAGGA
GGCCAAGACCAAATGCCGGACCATTGCATCCCTACTGACGGCAGCCCCCAACCCTCACTCCAAG
GGGGTGCTTATGTTTAAGAAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAGTGAGTTTCGGGG
CTGCAGCTGGGACAGGAACAGAGGAGGAGGAGGACGGCATCCCCCCAACGAGTGAGTCGGAGCT
GGACGAGGAGGCCTTCTCAGATGCCCGCAGCCTTACTAATCAATCCGACTGGGACAGCCCTTAT
CTAGACATGGAGCTGGCTAGGGCTGGCTCAGGCATAGCAGAGAGTCAGAGCTCTGGACTGGGAG
GACAGCTAAGTGAGGTCTCTGGCCGAGGGGTACAGCTCTTTGAACAGCAGCGCCAAAGGGTAGC
CTCCAGCTCCCAGGAGCTGGCTCAGGTGGGCCCAGCAGCCATGCTTAATGGGCAGAGTCTGCAG
TCCCCACCTCGAGCTCAGAGTGCTCCCCCAGAGGCAGCGGTGCTTCCACTCAGCCCTTTGTCAG
CCCCTGCAGCCAGCCCTAGCCCCTTTCAGGATGGTGGAGCCCCCAGCCCTGCGCCAAGTATCTT
TAACAGGTCAGCGAGACCTTTTACCCCAGGTTTACCAGGGCAACGGTCAGGCACCACCTCAGTG
ATTTTCCGACCCGTAGCCCCTAAGAAGGTTAATGAGGCCTTGGGGGGCACTAGCCCCGCCCCGT
CCCCCTTCGCAGCTTCTCTACAGGGGCCCACCCCTCTGCCCAGCTTCACCACTGTGGTGCCCAA
CCGCACGCCGGTCTCTGGAACCTCCAGCAGCACCCAACGCTCCTCCGGTCCTGTGACCGCTACC
AGCTCCTTGTACATCCCAGCCCCGAGCCGGCCCGTTACACCAGGAGGTGCCCCAGAGCCTCCCA
CTCCTCCTAGCGCTGCTGCCATGACCTCCACTGCTTCCATATTCTTGTCCACTCCTCTGAGAAA
CTCTGCGCGCCCGGAGGCACCCGGCACGGCGGCCCCCGAGCCTGCCAGCGCTCGGGAGCAGCGC
ATCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGGAGGCTCGGCGCCGGGGAACCCGCAAAC
AGATGTTCCGGCCTGGAAAGGAAGAGACGAAGAACTCGCCCAACCCCGAGCTGCTATCGCTGGT
ACAGAACCTGGATGAAAAACCTCGGGCGGGCGGTGCGGAATCTGGTCCGGAGGAGGACGCTTTA
AGCCTCGGAGCAGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAGGAGTTACAAGACCCTGT
CTCAAGTGTCACCGAAAACCCCACCTCCAATGGCTCCCAAAACCCCACCCCCTATGACGCCTAA
GACTCCACCCCCTGTGGCTCCTAAACCCGGGTCTCGAGGGCTCCCTGACGGGCTAGTGAATGGA
TCGACCTCTATGGTTGGGATTCCTGAGCTCCCAAGGCTGCAGGGGAGGGGTGGGGAGCTATTTG
CCAAACGGCAGAGCCGTGCCGACCGGTACGTGGTGGAAGCTACACCTGGCTCTAGCCTTAATCC
AGGCCTTCGCCCTAGAAGTCCTTCTCCCACACCCTCACTGCCCCCATCCTGGAAATACTCACCC
AACATCCGTGCCCCACCTCCTATTGCTTACAACCCACTTCTCTCACCCTTTTTCCCTCAGGCTG
CCCGAACTCTCCCCAATAAGGCTCAATCCCAGGGACCTCGGGCGACCCCTAAGCAGGGTATCAA
GGCCCTGGATTTCATGCGGCATCAGCCATACCAACTTAAAACTGCCATGTTTTGTTTTGACGAG
GGTCCTTCAACTCCTGCCTCCACTTCAGGGCCTCCCAAAACTGCCCGAGTCCAGGAGATCCGCA
GATTTTCCACTCCGGCGCCCCAACCCACTGCAGAACCCTTGGCTCCCACTGTGCTTGCCCCCAG
AGCGGCTACCACCTTGGACGAGCCCATTTGGAGGGCAGAGTTGGCCTCATCCCCTGTCCCTAAC
CCGGACCATCTAGAGTCTCTCAGGAGCTTTGCGGCCACTCCCACTTCCTGCGGCTTCCAAGTAG
CCAGGCCGCGGTTCTCAGCCACCAGAACAGGGTTGCAGGCTCATGTCTGGAGACCTGGGGCAGG
GCACCACTGAGCAGGGAATAGGTCCCAGGACCAAGTAATGGAACTTAGAGTCCCCAAAGTCTCT
CTCTTCTGCTTTGTCCTACCGGCCTCCCGTCCCCCGTCCCCCCCCCTCCCCCCCGCATCTGAGT
CTGACTGCCCCTAGCCAGAGTGCGTTCCCCTCAGCTTCCTCCCTGCTGGTGCTTTTAAGCCCCT
CATCTCTGCTTTGGAATCTTCTCTAGATGTCCTTGCCTGTCAGGCTTCTCTACCCAGAAGCCTC
AGCAGATTTCTGCTTTTGTTTTGCATTTGTGTTTCTCTCTGTGGGCAGCACTTTAGTGTTAGGT
AAAAAGCACACTGTAAAGTGACCACTGAGAGCTCAGGCAAAATGCTCACTCGCTCTCAGGCAAG
CAACTAAGGGTCTGCACTGTGGCTTGATCCCCTCTACCCTCCATACTCCTCACTCCGCTTTCCC
TAGGTTAGTTGCCATACGCCTAAGGGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTG
TGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATGCGCGCGTGCTTTCACAAATGTGTG
TGATTAGGCTCTGCTCTAGAAAGGCATCAAATACATATACATGTGTGCTTCTCTTGAGGCAAAG
GACAAGACAAGAGGAGTGTTTTCACCTACTGGAAGGGTCAGATGGCTTCATAAAGAATCCTGTG
GGGAACAAGAGCTACTGCAGAAAAGCTCCTGAGAGAGGAGTATCTGTAGCATGGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGC
ACAGCATCTTGTGAAATTAACAAGTCTGACAAGACTGGGAGGCAAGGACACTTTTCATGGGTTT
GAGTTATACAAGGTAGACCCAGAATAAGACTAAGAATTCTATTTCCTTGGATTAAAGGAAGTTA
GCAACCAGGGCCCTGTGCTGGGCACATCAGAATCCAGAAAGTAAAAAAGAACATTTCTTCTGAA
CTGCTTAATGAGTGTAAGATAGAAAGGATGGTGAATAGAGCCAGAGTGGATGGGGAGAACGAGG
CAAAAGCCAGGAACGAGGCTGGAATGAGTGAAAGTGAACAAGGGGGAGAGTAAAGTTGGCCAAC
ATGTGTGAGGGGGTCTGGGAACTTCTGAGCTGGGGAGAACACATTTGTTAGAGCAAAGGCGTGA
GCACATGCAGTGGCTGTGTTACCTCCTGTGAATCTGACCTTCCTTCCACCCTTCTGGAGCTTAT
CCCGATGACCTGGGAAACCAGGGAGACACTGAGCCCAAACCTCTTGTTGTCCCACCCTACCTGT
AGAAGCCCAGCTCTTTGCAGCTTCAGGCCCTGTGTCTGATCCCAGAAGGATAAGGACTATCCTC
CCATGAAGACCACCATCAGTTATGGTTGTTGTTTGGCCTGGAAACCAATCTTTTCCTTTGCAAT
ATTGGGTGTCACAATTCTTTGGTTTGTGCACAAGAATAAACGTATGCTCACAAC

hide sequence

RefSeq Acc Id:

XM_039093229 ⟹ XP_038949157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,685,123 - 3,690,672 (+)	NCBI
mRatBN7.2	15	3,635,873 - 3,641,428 (+)	NCBI

RefSeq Acc Id:

XM_039093230 ⟹ XP_038949158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,685,123 - 3,690,672 (+)	NCBI
mRatBN7.2	15	3,635,873 - 3,641,428 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001292067	(Get FASTA)	NCBI Sequence Viewer
	NP_001292068	(Get FASTA)	NCBI Sequence Viewer
	XP_038949157	(Get FASTA)	NCBI Sequence Viewer
	XP_038949158	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86238	(Get FASTA)	NCBI Sequence Viewer
	EDL86239	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011956
	ENSRNOP00000011956.5
	ENSRNOP00000081435.2

RefSeq Acc Id:	NP_001292067 ⟸ NM_001305138
- Peptide Label:	isoform 1
- UniProtKB:	D3ZZ68 (UniProtKB/TrEMBL), A6KKP4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGAEEEVQVTLAGGAPWGFRLQGGAEQRKPLQVSKIRRRSQAGRSGLRERDQLLSINGVSCTDF SHASAMTLIDASGHQLVLTVRRVAEEGSVRSPSPGELQMLSPLSPLSPEPPGAPVTQAPQPGSL RSPPDSEAYYGETDSDVDGPATHEKPRRTRRRGPPRPSLPGAPPDEVYLSDSPAEPAPVKTGSP SQGDSRVSSPSWEEGSALQPPPAEALLLPHGPLRPGPHLIPMVGPVPHPVAEDLTTTYTQKAKQ AKLQRAESLQEKSVKEAKTKCRTIASLLTAAPNPHSKGVLMFKKRRQRAKKYTLVSFGAAAGTG TEEEEDGIPPTSESELDEEAFSDARSLTNQSDWDSPYLDMELARAGSGIAESQSSGLGGQLSEV SGRGVQLFEQQRQRVASSSQELAQVGPAAMLNGQSLQSPPRAQSAPPEAAVLPLSPLSAPAASP SPFQDGGAPSPAPSIFNRSARPFTPGLPGQRSGTTSVIFRPVAPKKVNEALGGTSPAPSPFAAS LQGPTPLPSFTTVVPNRTPVSGTSSSTQRSSGPVTATSSLYIPAPSRPVTPGGAPEPPTPPSAA AMTSTASIFLSTPLRNSARPEAPGTAAPEPASAREQRISVPAARTGILQEARRRGTRKQMFRPG KEETKNSPNPELLSLVQNLDEKPRAGGAESGPEEDALSLGAEACNFMQPLGGRSYKTLSQVSPK TPPPMAPKTPPPMTPKTPPPVAPKPGSRGLPDGLVNGSTSMVGIPELPRLQGRGGELFAKRQSR ADRYVVEATPGSSLNPGLRPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPN KAQSQGPRATPKQGIKALDFMRHQPYQLKTAMFCFDEGPSTPASTSGPPKTARVQEIRRFSTPA PQPTAEPLAPTVLAPRAATTLDEPIWRAELASSPVPNPDHLESLRSFAATPTSCGFQVARPRFS ATRTGLQAHVWRPGAGHH hide sequence

RefSeq Acc Id:	NP_001292068 ⟸ NM_001305139
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I5ZSY9 (UniProtKB/TrEMBL)
- Sequence:	show sequence METISQEPLSQASCDKDPAPELQDPFYAELQRAESLQEKSVKEAKTKCRTIASLLTAAPNPHSK GVLMFKKRRQRAKKYTLVSFGAAAGTGTEEEEDGIPPTSESELDEEAFSDARSLTNQSDWDSPY LDMELARAGSGIAESQSSGLGGQLSEVSGRGVQLFEQQRQRVASSSQELAQVGPAAMLNGQSLQ SPPRAQSAPPEAAVLPLSPLSAPAASPSPFQDGGAPSPAPSIFNRSARPFTPGLPGQRSGTTSV IFRPVAPKKVNEALGGTSPAPSPFAASLQGPTPLPSFTTVVPNRTPVSGTSSSTQRSSGPVTAT SSLYIPAPSRPVTPGGAPEPPTPPSAAAMTSTASIFLSTPLRNSARPEAPGTAAPEPASAREQR ISVPAARTGILQEARRRGTRKQMFRPGKEETKNSPNPELLSLVQNLDEKPRAGGAESGPEEDAL SLGAEACNFMQPLGGRSYKTLSQVSPKTPPPMAPKTPPPMTPKTPPPVAPKPGSRGLPDGLVNG STSMVGIPELPRLQGRGGELFAKRQSRADRYVVEATPGSSLNPGLRPRSPSPTPSLPPSWKYSP NIRAPPPIAYNPLLSPFFPQAARTLPNKAQSQGPRATPKQGIKALDFMRHQPYQLKTAMFCFDE GPSTPASTSGPPKTARVQEIRRFSTPAPQPTAEPLAPTVLAPRAATTLDEPIWRAELASSPVPN PDHLESLRSFAATPTSCGFQVARPRFSATRTGLQAHVWRPGAGHH hide sequence

Ensembl Acc Id:

ENSRNOP00000011956 ⟸ ENSRNOT00000011956

RefSeq Acc Id:	XP_038949158 ⟸ XM_039093230
- Peptide Label:	isoform X1
- UniProtKB:	A6KKP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949157 ⟸ XM_039093229
- Peptide Label:	isoform X1
- UniProtKB:	A6KKP5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081435 ⟸ ENSRNOT00000118985

Protein Domains

PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZ68-F1-model_v2	AlphaFold	D3ZZ68	1-978	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565434	AgrOrtholog
BioCyc Gene	G2FUF-14551	BioCyc
Ensembl Genes	ENSRNOG00000008949	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011956	ENTREZGENE
	ENSRNOT00000011956.6	UniProtKB/TrEMBL
	ENSRNOT00000118985.2	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
InterPro	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Synaptopodin_domain	UniProtKB/TrEMBL
KEGG Report	rno:305675	UniProtKB/TrEMBL
NCBI Gene	305675	ENTREZGENE
PANTHER	PUTATIVE-RELATED	UniProtKB/TrEMBL
	SYNAPTOPODIN 2-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PhenoGen	Synpo2l	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008949	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
UniProt	A0A8I5ZSY9	ENTREZGENE, UniProtKB/TrEMBL
	A6KKP4	ENTREZGENE, UniProtKB/TrEMBL
	A6KKP5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZ68	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Synpo2l	synaptopodin 2-like	RGD1565434_predicted	similar to synaptopodin 2-like (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565434_predicted	similar to synaptopodin 2-like (predicted)	LOC305675	similar to synaptopodin 2-like	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC305675	similar to synaptopodin 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD