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Gene: Zfp317 (zinc finger protein 317) Rattus norvegicus

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Symbol:

Zfp317

Name:

zinc finger protein 317

RGD ID:

1565419

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF317 (zinc finger protein 317); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500950; RGD1565419; similar to zinc finger protein 75

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF317 (zinc finger protein 317)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf317 (zinc finger protein 317)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF317 (zinc finger protein 317)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF317 (zinc finger protein 317)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp317 (zinc finger protein 317)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	25,867,678 - 25,905,256 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	25,883,832 - 25,905,270 (+)	Ensembl				GRCr8
mRatBN7.2	8	17,591,379 - 17,630,844 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	17,591,404 - 17,628,998 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	21,613,725 - 21,651,227 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	19,911,564 - 19,949,066 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	17,820,253 - 17,857,771 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	19,867,535 - 19,905,160 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	19,886,382 - 19,903,742 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	19,945,911 - 19,983,514 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	18,044,847 - 18,083,964 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	19,003,892 - 19,041,421 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dioxygen (EXP)

diuron (ISO)

doxorubicin (ISO)

indometacin (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:21630459

Genomics

Comparative Map Data

Zfp317
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	25,867,678 - 25,905,256 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	25,883,832 - 25,905,270 (+)	Ensembl				GRCr8
mRatBN7.2	8	17,591,379 - 17,630,844 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	17,591,404 - 17,628,998 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	21,613,725 - 21,651,227 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	19,911,564 - 19,949,066 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	17,820,253 - 17,857,771 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	19,867,535 - 19,905,160 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	19,886,382 - 19,903,742 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	19,945,911 - 19,983,514 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	18,044,847 - 18,083,964 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	19,003,892 - 19,041,421 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

ZNF317
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	9,140,397 - 9,163,413 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	9,140,380 - 9,163,424 (+)	Ensembl			hg38	GRCh38
GRCh37	19	9,251,073 - 9,274,089 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	9,112,073 - 9,135,084 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	9,112,072 - 9,135,082	NCBI
Celera	19	9,146,499 - 9,169,534 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	8,832,710 - 8,855,746 (+)	NCBI		HuRef
CHM1_1	19	9,250,747 - 9,273,782 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	9,266,590 - 9,289,607 (+)	NCBI		T2T-CHM13v2.0

Zfp317
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	19,533,315 - 19,561,039 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	19,533,398 - 19,561,027 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	19,622,038 - 19,649,743 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	19,622,102 - 19,649,731 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	19,426,535 - 19,454,175 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	19,372,530 - 19,400,133 (+)	NCBI		MGSCv36	mm8
Celera	9	16,902,794 - 16,930,179 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.35	NCBI

ZNF317
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	14,078,699 - 14,101,753 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	13,063,506 - 13,086,558 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	8,696,925 - 8,719,974 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	9,385,605 - 9,408,642 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	9,385,605 - 9,408,642 (+)	Ensembl			panPan2	panpan1.1

ZNF317
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	51,506,636 - 51,523,032 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	51,508,431 - 51,523,022 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	51,370,749 - 51,387,342 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	52,028,962 - 52,045,364 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	52,025,360 - 52,045,315 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	51,236,044 - 51,252,600 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	51,661,281 - 51,677,681 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	51,902,937 - 51,919,544 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf317
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	211,693,781 - 211,700,574 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936969	138,681 - 143,654 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936969	138,640 - 143,788 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF317
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	67,312,173 - 67,340,319 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	67,312,148 - 67,336,323 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	67,665,754 - 67,690,118 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF317
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	8,360,765 - 8,383,473 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	8,377,140 - 8,382,898 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	11,767,140 - 11,791,331 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf317
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	155,695 - 162,022 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	154,455 - 172,746 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf317
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	15,308,385 - 15,321,664 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp317
98 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	106
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000034254
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

RH144185

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	17,628,586 - 17,628,802 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	19,904,742 - 19,904,957	NCBI	Rnor6.0
Rnor_5.0	8	19,983,096 - 19,983,311	UniSTS	Rnor5.0
RGSC_v3.4	8	18,083,569 - 18,083,784	UniSTS	RGSC3.4
Celera	8	19,041,026 - 19,041,241	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF393195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ202030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU671127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB781817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV776961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM039013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM046025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM104264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM122511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM140312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034254 ⟹ ENSRNOP00000033879

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	25,883,832 - 25,905,270 (+)	Ensembl
mRatBN7.2 Ensembl	8	17,591,404 - 17,628,998 (+)	Ensembl
Rnor_6.0 Ensembl	8	19,886,382 - 19,903,544 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078593 ⟹ ENSRNOP00000068739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	25,886,501 - 25,905,270 (+)	Ensembl
mRatBN7.2 Ensembl	8	17,610,229 - 17,628,995 (+)	Ensembl
Rnor_6.0 Ensembl	8	19,888,667 - 19,903,742 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106233 ⟹ ENSRNOP00000076892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	25,884,644 - 25,904,664 (+)	Ensembl
mRatBN7.2 Ensembl	8	17,591,406 - 17,628,998 (+)	Ensembl

RefSeq Acc Id:

NM_001134634 ⟹ NP_001128106

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	25,867,678 - 25,905,256 (+)	NCBI
mRatBN7.2	8	17,591,406 - 17,628,982 (+)	NCBI
Rnor_6.0	8	19,867,561 - 19,905,137 (+)	NCBI
Rnor_5.0	8	19,945,911 - 19,983,514 (+)	NCBI
RGSC_v3.4	8	18,044,847 - 18,083,964 (+)	RGD
Celera	8	19,003,892 - 19,041,421 (+)	RGD

Sequence:

show sequence

AGTAGAAGCCATTACTGTCAAGGAACTACTTTAATAAGACACATCTGCTAAAGAATGTTTGGGG
TTTCTCCCGTGTTTGGTCGGGACCCTTCTGTTCCCCGAAGCGTTCTGAAGCATTCGGGGCCTTT
AGGTGAACTTCTAGTTCTTCCGCCTTAGCTGCGGAGACTTCCGCTTCCTGCATTCCACCCTCTG
GATCTCACAATGTAGTCCAGACTGGCTTTTCAAACTTAAAATTTTTATGTTCTGACTTTCTTCT
GTCCTGGGATTATAGACAAGATTGCGATCCAGTTTCCAGTGGTGCTTGTTGCTGACCCAAAGCA
GAGTTTCTACGAGGTTGCCTATGCTTGGTGGAGACAGGATCCAGGGAGAAAGAAAGGAAGCAGA
TGTCTCATTATAAGGTGGTTTGTAATTCTCAATCCTCAAACCTTCTATGTACGAGAGGTTAATA
ATCTGTCTGATTATGAATCAAGAGGAAATGTCAAGATACCAAATTCAGTGTTCTCACTAAGTAT
GAGAGACAGCCTTTGAAGATCCCCCTTGTGGCAGTTGTCAGCTTGGAAAAGCAGTGCTTCTTCA
AGTACTCCCACATTCAGCTAAGGTTACTGTGCCCCACAAATGGCTACCATCTGTCTGTCTCCCA
AGTTTGATAACCAGGAATCAGAATTTCCTCTTCCATCAAAATGTGATTCTTGTCATCAGAGTTT
GAGTTTGTTTGCTTGCCGTGCTCCAGAGCCTGATACACCAGCTCATGTTTATTCTCAGGAGTTC
GTGACATTTCAAGATATTGCTGTTGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCTC
AGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCATTGGGTTTTCA
GGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGAGCTGAGAATGGAGGAGAGA
GGCATTCAGCAGTGTCCTTCTCCAGATTGGGAAACTACATCTAAGATCAAATGGTCCATTCTTA
TGGAAGATATTTTTGGGAAGGAAGCATCTGATGGTGTAAGATTGGAAGCATCTCATCTTTTGGA
GAAATCATCTGACTTTACCCATTTATTTGAAGTCCTTAATATTGGTCGTCACCTTGCACAGCCA
ATAGGAATGCCCACAAGCAAGAGACCCTATCACCACCACACCTGTGGAGCTGCTTTCAAGAACA
GGATTCACCTGACTCAGCACATAAGCATGTATGATGGGAGAAAAATGCATGAATGTCACCAGTG
CCAGAAAGCCTTCACCACCAGTGCTTCTCTTACAAGGCACTGTAGAATTCACACTGGGGAGAAG
CCTTATGAGTGCAGCAGCTGTGGCAAAGCCTTCAATGACCCATCAGCTCTAAGGAGCCACACAA
GAACTCACCTCAAAGAAAAGCCCTTTGACTGTAGTCAGTGTGGTAATGCCTTCCGGACCCTCTC
TGCTCTGAAGATACACATGCGAGTTCACACTGGTGAAAGACCCTACAAATGTGACGAGTGTGGC
AAAGCCTATGGCAGGAGCTGCCACCTCATTGCCCACAAGCGAACACACACTGGAGAGAGGCCCT
ATGAGTGTCAGGACTGTGGAAAAGCCTTCCAGCACCCCTCCCACCTGAAGGAGCATGTTCGGAA
CCATACTGGGGAAAAGCCTTTTGAGTGTATACAGTGTGGCAAAGCCTTCCGATGGAAGTCCAAC
TTCAATTTGCATAAGAAGAACCACATGGTGGAAAAAACTTATGAGTGCAAAGACTGTGGAAAGT
CCTTCAGTGATCTCCTATCAAGAAGGAAACACATGAGGAGTCACATTGTAAAGAAACCAGTCGA
GTGTCATCAATGTGGGAAAACCTTTCGAAACCAGTCCATCCTAAAAACACACATGAACTCTCAC
ACTGGGGAGAAACCTTATGGTTGTGATCTCTGTGGCAAAGCCTTCAGTGCTAGTTCCAACCTCA
CTGCACACAGGAAGATTCACACTCAAGAGAGACACTATGAATGTTCGTCCTGTGGGAAGGTCTT
TGGTGATTACCTGTCACGAAGGAGGCACATGAGCATCCATCTTGTCAAGAAGCGTGTGGAATGT
AGACAGTGTGGAAAAGCCTTTAGGAACCAATCTACCCTGAAGACACACATGAGAAGCCACACCG
GTGAGAAGCCATATGAGTGTGACCATTGCGGAAAAGGTTTCAGCATAGGATCTAACCTTAATGT
TCATCGGAGGATCCATACTGGGGAAAAGCCTTATGAATGTCTTGTTTGTGGAAAAGCCTTCAGT
GACCATTCATCCCTTAGGAGTCATGTGAAAACCCACCGGGGGAGAAGCTCTTTGCACCATCTCT
GTGGAAAAGGTTTCAGTGAATACTCAGATGCAGAGGAAACATGGCAAGTGTAAGTCGTCAAGAA
TCTTTCATGACCTCTCCATATACAGAACGCAAAAGATCAGTTTGTAGAAAGACTGAGAAGACCT
AAGTTGGTATTCAGCAACTGGGATCTCTTGAGAACCTAGCAACTGTGAAAAATTTGTATTGAGT
AGCAAGAAACTTTCAACATATATTGTGCTCTGAACTTAGGCAGAGAGTCTTCAGTGTGGACATT
TAGTATTAAAGTCAGCAACACTTTGTGGGCACACCAGAGTGAATCCTATCATTCAGTGATTAGA
GAAGTCTTTCCTCATCTCACCTTTGTTCCTCATGGGAGAAATCAGAGTTTTTTTAAAAAACAAA
ACAAAACAAACAAACAAACAAAAAAAACCCCTCAGAAATAACCTTGGAAAAGTACATTAAAAAT
AGGAAAGCAACCTGGCCATTTCTTTATTGATTTTGGCTCAGAAGACAAGAATGCTTCTTTCTTT
TTAAAAAGAAAAATCTGGCAGAGGCAGTACATGGCACTCAAATTCTGTTTATAAAAATATTCTT
TTAGGGCTTTAGTCAGTAGCATTGGATCTCAACCTGGAGCACTTTTGCTCTCCAGGGCAGTTGT
GTCTGGGAAGATTTTGGTTTTAAGAATGGAGAGAGGTGCTACAGACGATCACAGATGCTATCAA
ATAGCCTATGATATATAGAAGTCTTCCTATGTGTACAACTGTAAAAGTACTGAGTTTGAGAACA
GTCTCATTCATTCCTTGGGTACTGTGATTCCTGTGAACACTAACAGGAGAAAATTTTTACAGTT
TTTTAAAAGAAAAACCATCGCATTGCAGTTCTCTCTGAAAATGTATGAAAACGTACACTGCTTA
TAACTTTATGAAAATAATTTTAGCCATAGTCCCCTTGTATGTGAATTTAATTAGAGTTGTATTT
AAAAGTCATTTTTTGGTGATAACTGACTCCAGCTCTTTAGTTTTTTTGATCTTTTTATCTTTAG
GATTATGGTTCTCTAAATAACTTTGTCCCCATCATAAATAATTAAATATAGTATTTTTTACTAT
AGCTTTGTAAATTATATCTTTATTTCACTTTAGTAACCTTAACATGACCACTGGCATATTTAGA
ATTGTGTAATGTTATGCACTGGGTAATATAGGTATTTTTAGGTACCTTTGTCATATGCATTGTG
GTCAAAGCATGAAGCTTCCTAACAGATAGTACTTTTGGTTTTGCCTTTCTGTCCAAAAGACCTA
TAAGATTTCGCATATTCATTTAAACACCTTCTATAGCAGAAGAATAACAGTTTTATCTATAGTG
CCACTATAAGAAATCTTTTTTAGTTTTTCATGCAACTCATATTCTCTACATGCCATGACCCCTG
GATATTCACTCATCAACAGAGATACATGTGTGGTATTCTGAGAAAAAGCTCTTGGGGAAAAAAT
ACCTGATTTTTGTTTTTTAATTCGTTGTGTGACCCTGAAGATGAAAACCACAGTCTAAAAAGAA
TAGAATAGAGAAGTCACAGTGACCCTAGTCTGTATTTTTGCTTCTGAAAGAGTTTACATTGGTA
TTCAATATTATATCTAGACTTTCTCTTCCCCGAGAAATTAATAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001128106	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78396	(Get FASTA)	NCBI Sequence Viewer
	EDL78397	(Get FASTA)	NCBI Sequence Viewer
	EDL78398	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033879
	ENSRNOP00000033879.5
	ENSRNOP00000068739.2
	ENSRNOP00000076892.2

RefSeq Acc Id:

NP_001128106 ⟸ NM_001134634

- UniProtKB:

A0A8I5ZK65 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATICLSPKFDNQESEFPLPSKCDSCHQSLSLFACRAPEPDTPAHVYSQEFVTFQDIAVDFTEK
EWPLLDSSQRKLYKDVMLENYSNLSSLGFQVGKPRLISHLEQEEELRMEERGIQQCPSPDWETT
SKIKWSILMEDIFGKEASDGVRLEASHLLEKSSDFTHLFEVLNIGRHLAQPIGMPTSKRPYHHH
TCGAAFKNRIHLTQHISMYDGRKMHECHQCQKAFTTSASLTRHCRIHTGEKPYECSSCGKAFND
PSALRSHTRTHLKEKPFDCSQCGNAFRTLSALKIHMRVHTGERPYKCDECGKAYGRSCHLIAHK
RTHTGERPYECQDCGKAFQHPSHLKEHVRNHTGEKPFECIQCGKAFRWKSNFNLHKKNHMVEKT
YECKDCGKSFSDLLSRRKHMRSHIVKKPVECHQCGKTFRNQSILKTHMNSHTGEKPYGCDLCGK
AFSASSNLTAHRKIHTQERHYECSSCGKVFGDYLSRRRHMSIHLVKKRVECRQCGKAFRNQSTL
KTHMRSHTGEKPYECDHCGKGFSIGSNLNVHRRIHTGEKPYECLVCGKAFSDHSSLRSHVKTHR
GRSSLHHLCGKGFSEYSDAEETWQV

hide sequence

Ensembl Acc Id:

ENSRNOP00000068739 ⟸ ENSRNOT00000078593

Ensembl Acc Id:

ENSRNOP00000033879 ⟸ ENSRNOT00000034254

Ensembl Acc Id:

ENSRNOP00000076892 ⟸ ENSRNOT00000106233

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A171-F1-model_v2	AlphaFold	D4A171	1-601	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565419	AgrOrtholog
BioCyc Gene	G2FUF-31529	BioCyc
Ensembl Genes	ENSRNOG00000006684	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034254	ENTREZGENE
	ENSRNOT00000034254.7	UniProtKB/TrEMBL
	ENSRNOT00000078593.3	UniProtKB/TrEMBL
	ENSRNOT00000106233.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	C2H2-ZF_domain	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:500950	UniProtKB/TrEMBL
NCBI Gene	500950	ENTREZGENE
PANTHER	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 544-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 628	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_6	UniProtKB/TrEMBL
PhenoGen	Zfp317	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006684	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2JTJ8_RAT	UniProtKB/TrEMBL
	A0A8I5ZK65	ENTREZGENE, UniProtKB/TrEMBL
	A6JNG8_RAT	UniProtKB/TrEMBL
	D4A171_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-01-20	Zfp317	zinc finger protein 317	RGD1565419	similar to zinc finger protein 75	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1565419	similar to zinc finger protein 75	RGD1565419_predicted	similar to zinc finger protein 75 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565419_predicted	similar to zinc finger protein 75 (predicted)	LOC500950	similar to zinc finger protein 75	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500950	similar to zinc finger protein 75			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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