Bnip3-ps1 (BCL2 interacting protein 3, pseudogene 1) - Rat Genome Database

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Gene: Bnip3-ps1 (BCL2 interacting protein 3, pseudogene 1) Rattus norvegicus
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Symbol: Bnip3-ps1
Name: BCL2 interacting protein 3, pseudogene 1
RGD ID: 1565371
Description: INTERACTS WITH rotenone
Type: pseudo
RefSeq Status: INFERRED
Previously known as: BCL2/adenovirus E1B interacting protein 3, pseudogene 1; LOC501140; RGD1565371; similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3
Related Functional Gene: Bnip3  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8956,254,785 - 56,256,398 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2948,762,804 - 48,764,417 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx957,304,898 - 57,306,512 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0962,427,726 - 62,429,340 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0960,723,716 - 60,725,330 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,616,224 - 53,617,837 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0953,284,376 - 53,285,989 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4945,749,631 - 45,751,132 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera946,431,426 - 46,433,039 (-)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
rotenone  (EXP)

References

Genomics

Variants

.
Variants in Bnip3-ps1
7 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat

Markers in Region
Bnip3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,763,896 - 48,764,118 (+)MAPPERmRatBN7.2
Rnor_6.0953,617,317 - 53,617,538NCBIRnor6.0
Rnor_5.0953,285,469 - 53,285,690UniSTSRnor5.0
Celera946,432,519 - 46,432,740UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map9q22UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_001063205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera946,431,426 - 46,432,927 (-)RGD
RefSeq Acc Id: XM_576562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4945,749,631 - 45,751,132 (-)RGD
Protein Sequences
GenBank Protein EDL99103 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27615 BioCyc
NCBI Gene 501140 ENTREZGENE
PhenoGen Bnip3-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-14 Bnip3-ps1  BCL2 interacting protein 3, pseudogene 1  Bnip3-ps1  BCL2/adenovirus E1B interacting protein 3, pseudogene 1  Name changed 629549 APPROVED
2008-04-30 RGD1565371  similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3   RGD1565371_predicted  similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565371_predicted  similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3 (predicted)  LOC501140  similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501140  similar to BCL2/adenovirus E1B 19 kDa-interacting protein 3      Symbol and Name status set to provisional 70820 PROVISIONAL