Cd36l1 (CD36 molecule like 1) - Rat Genome Database

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Gene: Cd36l1 (CD36 molecule like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cd36l1 (Ensembl: Cd36-ps1)
Name: CD36 molecule like 1 (Ensembl:CD36 molecule, pseudogene 1)
RGD ID: 1565355
Description: ENCODES a protein that exhibits scavenger receptor activity; thrombospondin receptor activity; transforming growth factor beta binding; INVOLVED IN amyloid-beta clearance by cellular catabolic process; energy homeostasis; receptor-mediated endocytosis; PARTICIPATES IN cell-extracellular matrix signaling pathway; eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; malaria pathway; FOUND IN brush border membrane; cell surface; Golgi apparatus (ortholog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cd36 antigen-like; cell surface protein CD36; FAT; fatty acid translocase/CD36; fatty acid transporter; LOC100910000; LOC103690020; LOC499985; platelet glycoprotein 4-like; RGD1565355; similar to fatty acid translocase/CD36
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8418,316,806 - 18,357,863 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl418,261,059 - 18,405,365 (+)EnsemblGRCr8
mRatBN7.2417,424,749 - 17,465,808 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl417,354,466 - 17,513,903 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx422,555,338 - 22,582,974 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0418,370,915 - 18,398,609 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0416,753,279 - 16,780,921 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd420,160,013 - 20,203,970 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive417,637,261 - 17,681,220 (+)NCBILyon_Normotensive
Lyon_Hypertensive418,095,034 - 18,138,986 (+)NCBILyon_Hypertensive
F344_StmMcwi417,919,703 - 17,960,916 (+)NCBIF344_StmMcwi
Rnor_6.0414,071,705 - 14,112,330 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl414,001,761 - 14,249,749 (+)Ensemblrn6Rnor6.0
Rnor_5.0414,181,115 - 14,221,373 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4413,576,484 - 13,604,065 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera412,963,120 - 12,990,602 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. FAT/CD36: a major regulator of neuronal fatty acid sensing and energy homeostasis in rats and mice. Le Foll C, etal., Diabetes. 2013 Aug;62(8):2709-16. doi: 10.2337/db12-1689. Epub 2013 Apr 4.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. CD36 is indispensable for thermogenesis under conditions of fasting and cold stress. Putri M, etal., Biochem Biophys Res Commun. 2015 Feb 20;457(4):520-5. doi: 10.1016/j.bbrc.2014.12.124. Epub 2015 Jan 13.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. IL-4-induced selective clearance of oligomeric beta-amyloid peptide(1-42) by rat primary type 2 microglia. Shimizu E, etal., J Immunol. 2008 Nov 1;181(9):6503-13.
9. Luminal lipid regulates CD36 levels and downstream signaling to stimulate chylomicron synthesis. Tran TT, etal., J Biol Chem. 2011 Jul 15;286(28):25201-10. doi: 10.1074/jbc.M111.233551. Epub 2011 May 24.
10. Activation of rat alveolar macrophage-derived latent transforming growth factor beta-1 by plasmin requires interaction with thrombospondin-1 and its cell surface receptor, CD36. Yehualaeshet T, etal., Am J Pathol. 1999 Sep;155(3):841-51.
Additional References at PubMed
PMID:7688729   PMID:8320718   PMID:9315741   PMID:10409247   PMID:11175782   PMID:11595646   PMID:11729182   PMID:12477932   PMID:12637562   PMID:12829625   PMID:14640889   PMID:14748718  
PMID:15161924   PMID:15331529   PMID:15492479   PMID:15848183   PMID:16684853   PMID:17374701   PMID:17640331   PMID:18772338   PMID:19273501   PMID:19878707   PMID:20075072   PMID:20237389  
PMID:22128087   PMID:23099442   PMID:23238794   PMID:24317495   PMID:24391823   PMID:25477422  


Genomics

Variants

.
Variants in Cd36l1
163 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:67
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000067543
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH132455  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 153 91 90 59 92 59 6 356 192 11 132 81 92 31 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000008319   ⟹   ENSRNOP00000008319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,432,132 - 17,462,526 (+)Ensembl
Rnor_6.0 Ensembl414,151,414 - 14,188,215 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000061687   ⟹   ENSRNOP00000058398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,487,573 - 17,513,903 (+)Ensembl
Rnor_6.0 Ensembl414,151,343 - 14,191,498 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000066224   ⟹   ENSRNOP00000061162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,071,507 - 14,249,749 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000067543   ⟹   ENSRNOP00000063867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,432,156 - 17,513,903 (+)Ensembl
Rnor_6.0 Ensembl414,213,587 - 14,237,989 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075878   ⟹   ENSRNOP00000068345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,039,977 - 14,241,272 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075962   ⟹   ENSRNOP00000068147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,466 - 17,406,805 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,001,866 - 14,071,161 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076519   ⟹   ENSRNOP00000067925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,001,761 - 14,167,505 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076573   ⟹   ENSRNOP00000067980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,466 - 17,513,903 (+)Ensembl
Rnor_6.0 Ensembl414,151,374 - 14,246,665 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076946   ⟹   ENSRNOP00000068300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,466 - 17,406,801 (+)Ensembl
Rnor_6.0 Ensembl414,212,925 - 14,241,272 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077219   ⟹   ENSRNOP00000074542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,432,132 - 17,462,882 (+)Ensembl
Rnor_6.0 Ensembl414,151,374 - 14,246,665 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077505   ⟹   ENSRNOP00000070601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,070,553 - 14,249,718 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091249   ⟹   ENSRNOP00000069273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,525 - 17,410,081 (+)Ensembl
Rnor_6.0 Ensembl414,039,977 - 14,241,269 (+)Ensembl
RefSeq Acc Id: NM_001109218   ⟹   NP_001102688
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8418,316,806 - 18,357,863 (+)NCBI
mRatBN7.2417,432,132 - 17,464,888 (+)NCBI
Dahl_SR_JrHsd420,160,013 - 20,203,970 (+)NCBI
Lyon_Normotensive417,637,261 - 17,681,220 (+)NCBI
Lyon_Hypertensive418,095,034 - 18,138,986 (+)NCBI
F344_StmMcwi417,919,703 - 17,960,916 (+)NCBI
Rnor_6.0414,071,705 - 14,112,330 (+)NCBI
Rnor_5.0414,181,115 - 14,221,373 (+)NCBI
RGSC_v3.4413,576,484 - 13,604,065 (+)RGD
Celera412,963,120 - 12,990,602 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102688 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA02878 (Get FASTA)   NCBI Sequence Viewer  
  AAC24876 (Get FASTA)   NCBI Sequence Viewer  
  AAF25552 (Get FASTA)   NCBI Sequence Viewer  
  BAA21550 (Get FASTA)   NCBI Sequence Viewer  
  EDL99451 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069273
RefSeq Acc Id: NP_001102688   ⟸   NM_001109218
- UniProtKB: Q925W0 (UniProtKB/Swiss-Prot),   Q07969 (UniProtKB/Swiss-Prot),   A0A0G2K8B4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074542   ⟸   ENSRNOT00000077219
Ensembl Acc Id: ENSRNOP00000008319   ⟸   ENSRNOT00000008319
Ensembl Acc Id: ENSRNOP00000068345   ⟸   ENSRNOT00000075878
Ensembl Acc Id: ENSRNOP00000058398   ⟸   ENSRNOT00000061687
Ensembl Acc Id: ENSRNOP00000070601   ⟸   ENSRNOT00000077505
Ensembl Acc Id: ENSRNOP00000061162   ⟸   ENSRNOT00000066224
Ensembl Acc Id: ENSRNOP00000069273   ⟸   ENSRNOT00000091249
Ensembl Acc Id: ENSRNOP00000067980   ⟸   ENSRNOT00000076573
Ensembl Acc Id: ENSRNOP00000067925   ⟸   ENSRNOT00000076519
Ensembl Acc Id: ENSRNOP00000063867   ⟸   ENSRNOT00000067543
Ensembl Acc Id: ENSRNOP00000068300   ⟸   ENSRNOT00000076946
Ensembl Acc Id: ENSRNOP00000068147   ⟸   ENSRNOT00000075962

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7F5B5-F1-model_v2 AlphaFold F7F5B5 1-472 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565355 AgrOrtholog
BioCyc Gene G2FUF-45915 BioCyc
Ensembl Genes ENSRNOG00000005906 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000091249 ENTREZGENE
InterPro CD36/SCARB1/SNMP1 UniProtKB/Swiss-Prot
  CD36_fam UniProtKB/Swiss-Prot
NCBI Gene 499985 ENTREZGENE
PANTHER PLATELET GLYCOPROTEIN 4 UniProtKB/Swiss-Prot
  SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 UniProtKB/Swiss-Prot
Pfam CD36 UniProtKB/Swiss-Prot
PhenoGen Cd36l1 PhenoGen
PRINTS CD36ANTIGEN UniProtKB/Swiss-Prot
  CD36FAMILY UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005906 RatGTEx
UniProt A0A096MJX7_RAT UniProtKB/TrEMBL
  A0A0G2K8B4 ENTREZGENE, UniProtKB/TrEMBL
  CD36_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5BKE5_RAT UniProtKB/TrEMBL
  Q925W0 ENTREZGENE
UniProt Secondary Q925W0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cd36l1  CD36 molecule like 1  RGD1565355  similar to fatty acid translocase/CD36  Symbol and Name Changed 1299863 APPROVED
2021-03-09 RGD1565355  similar to fatty acid translocase/CD36  LOC103690020  platelet glycoprotein 4-like  Data merged from RGD:9322705 737654 PROVISIONAL
2015-07-29 RGD1565355  similar to fatty acid translocase/CD36  LOC100910000  platelet glycoprotein 4-like  Data merged from RGD:6500760 737654 PROVISIONAL
2014-08-25 LOC103690020  platelet glycoprotein 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100910000  platelet glycoprotein 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1565355  similar to fatty acid translocase/CD36   RGD1565355_predicted  similar to fatty acid translocase/CD36 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565355_predicted  similar to fatty acid translocase/CD36 (predicted)  LOC499985  similar to fatty acid translocase/CD36  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499985  similar to fatty acid translocase/CD36      Symbol and Name status set to provisional 70820 PROVISIONAL