Zcchc17 (zinc finger CCHC-type containing 17) - Rat Genome Database

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Gene: Zcchc17 (zinc finger CCHC-type containing 17) Rattus norvegicus
Analyze
Symbol: Zcchc17
Name: zinc finger CCHC-type containing 17
RGD ID: 1565267
Description: Predicted to enable RNA binding activity and identical protein binding activity. Predicted to be involved in RNA stabilization. Predicted to be located in nucleolus. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human ZCCHC17 (zinc finger CCHC-type containing 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC500555; nucleolar protein of 40 kDa; RGD1565267; similar to PS1D protein; zinc finger CCHC domain-containing protein 17; zinc finger, CCHC domain containing 17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,942,789 - 147,984,596 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5147,942,789 - 147,984,584 (-)EnsemblGRCr8
mRatBN7.25142,658,626 - 142,700,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,658,589 - 142,700,426 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5145,357,901 - 145,399,693 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,127,707 - 147,169,498 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,125,098 - 147,166,475 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,535,519 - 148,577,315 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,535,519 - 148,577,292 (-)Ensemblrn6Rnor6.0
Rnor_5.05152,252,914 - 152,294,538 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45149,347,190 - 149,388,386 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5141,125,063 - 141,166,773 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12202495   PMID:22658674   PMID:22681889   PMID:29028963  


Genomics

Comparative Map Data
Zcchc17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,942,789 - 147,984,596 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5147,942,789 - 147,984,584 (-)EnsemblGRCr8
mRatBN7.25142,658,626 - 142,700,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,658,589 - 142,700,426 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5145,357,901 - 145,399,693 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,127,707 - 147,169,498 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,125,098 - 147,166,475 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,535,519 - 148,577,315 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,535,519 - 148,577,292 (-)Ensemblrn6Rnor6.0
Rnor_5.05152,252,914 - 152,294,538 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45149,347,190 - 149,388,386 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5141,125,063 - 141,166,773 (-)NCBICelera
Cytogenetic Map5q36NCBI
ZCCHC17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,297,032 - 31,364,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,296,982 - 31,365,527 (+)Ensemblhg38GRCh38
GRCh37131,769,879 - 31,837,783 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,542,429 - 31,610,367 (+)NCBIBuild 36Build 36hg18NCBI36
Celera130,026,341 - 30,094,350 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,876,542 - 29,944,556 (+)NCBIHuRef
CHM1_1131,885,748 - 31,953,687 (+)NCBICHM1_1
T2T-CHM13v2.0131,149,209 - 31,217,206 (+)NCBIT2T-CHM13v2.0
Zcchc17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,209,176 - 130,253,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,209,176 - 130,253,736 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384130,315,383 - 130,359,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,315,383 - 130,359,943 (-)Ensemblmm10GRCm38
MGSCv374129,993,329 - 130,037,190 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364129,818,205 - 129,840,890 (-)NCBIMGSCv36mm8
Celera4128,649,036 - 128,692,835 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Zcchc17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,793,264 - 9,850,396 (+)Ensembl
ChiLan1.0NW_0049554529,793,264 - 9,850,396 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,468,411 - 195,536,665 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,587,456 - 194,655,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,576,876 - 30,645,156 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,597,190 - 31,665,371 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,597,212 - 31,665,373 (+)EnsemblpanPan2panpan1.1
ZCCHC17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,659,152 - 69,720,942 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,237,619 - 66,300,042 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0270,223,407 - 70,285,922 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,223,408 - 70,285,234 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,059,336 - 67,121,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,056,026 - 68,118,431 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,055,592 - 69,118,094 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zcchc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,700,222 - 48,751,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,525,019 - 14,576,648 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,525,043 - 14,576,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,879,830 - 87,942,014 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1687,879,727 - 87,942,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,586,425 - 81,631,241 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,472,935 - 101,540,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,473,694 - 101,540,704 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603315,133,560 - 15,201,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476414,649,851 - 14,697,311 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zcchc17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1127,798,241 - 27,840,004 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zcchc17
476 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:451
Count of miRNA genes:223
Interacting mature miRNAs:259
Transcripts:ENSRNOT00000017156
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat

Markers in Region
RH134427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25142,658,732 - 142,658,918 (+)MAPPERmRatBN7.2
Rnor_6.05148,535,625 - 148,535,810NCBIRnor6.0
Rnor_5.05152,253,021 - 152,253,206UniSTSRnor5.0
RGSC_v3.45149,347,296 - 149,347,481UniSTSRGSC3.4
Celera5141,125,169 - 141,125,354UniSTS
RH 3.4 Map5990.09UniSTS
Cytogenetic Map5q36UniSTS
RH94406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25142,658,522 - 142,658,702 (+)MAPPERmRatBN7.2
mRatBN7.2515,110,318 - 15,110,494 (+)MAPPERmRatBN7.2
Rnor_6.0514,994,377 - 14,994,552NCBIRnor6.0
Rnor_6.05148,535,415 - 148,535,594NCBIRnor6.0
Rnor_5.0519,778,456 - 19,778,631UniSTSRnor5.0
Rnor_5.05152,252,811 - 152,252,990UniSTSRnor5.0
RGSC_v3.45149,347,086 - 149,347,265UniSTSRGSC3.4
RGSC_v3.4515,336,448 - 15,336,623UniSTSRGSC3.4
Celera514,492,133 - 14,492,308UniSTS
Celera5141,124,959 - 141,125,138UniSTS
Cytogenetic Map5q36UniSTS
RH138794  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25142,659,415 - 142,659,557 (+)MAPPERmRatBN7.2
Rnor_6.05148,536,308 - 148,536,449NCBIRnor6.0
Rnor_5.05152,253,704 - 152,253,845UniSTSRnor5.0
RGSC_v3.45149,347,979 - 149,348,120UniSTSRGSC3.4
Celera5141,125,852 - 141,125,993UniSTS
RH 3.4 Map5989.6UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017156   ⟹   ENSRNOP00000017156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5142,658,627 - 142,700,426 (-)Ensembl
Rnor_6.0 Ensembl5148,535,519 - 148,577,292 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100987   ⟹   ENSRNOP00000085072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5142,658,628 - 142,700,409 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108745   ⟹   ENSRNOP00000078016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5147,942,789 - 147,984,584 (-)Ensembl
mRatBN7.2 Ensembl5142,658,589 - 142,700,387 (-)Ensembl
RefSeq Acc Id: NM_001109267   ⟹   NP_001102737
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,984,584 (-)NCBI
mRatBN7.25142,658,626 - 142,700,426 (-)NCBI
Rnor_6.05148,535,519 - 148,577,292 (-)NCBI
Rnor_5.05152,252,914 - 152,294,538 (-)NCBI
RGSC_v3.45149,347,190 - 149,388,386 (-)RGD
Celera5141,125,063 - 141,166,773 (-)RGD
Sequence:
RefSeq Acc Id: NM_001395613   ⟹   NP_001382542
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,984,584 (-)NCBI
mRatBN7.25142,658,626 - 142,700,426 (-)NCBI
RefSeq Acc Id: NM_001395614   ⟹   NP_001382543
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,984,584 (-)NCBI
mRatBN7.25142,658,626 - 142,700,426 (-)NCBI
RefSeq Acc Id: NR_172648
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,984,584 (-)NCBI
mRatBN7.25142,658,626 - 142,700,426 (-)NCBI
RefSeq Acc Id: XM_006238970   ⟹   XP_006239032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,984,596 (-)NCBI
mRatBN7.25142,659,656 - 142,700,440 (-)NCBI
Rnor_6.05148,535,521 - 148,577,306 (-)NCBI
Rnor_5.05152,252,914 - 152,294,538 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110612   ⟹   XP_038966540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,984,566 (-)NCBI
mRatBN7.25142,659,373 - 142,700,422 (-)NCBI
RefSeq Acc Id: XM_063288265   ⟹   XP_063144335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85147,942,789 - 147,978,732 (-)NCBI
RefSeq Acc Id: NP_001102737   ⟸   NM_001109267
- Peptide Label: isoform 1
- UniProtKB: D3ZCQ7 (UniProtKB/TrEMBL),   A6ISP0 (UniProtKB/TrEMBL),   A0A8I5ZJN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239032   ⟸   XM_006238970
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000017156   ⟸   ENSRNOT00000017156
RefSeq Acc Id: XP_038966540   ⟸   XM_039110612
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZJN0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078016   ⟸   ENSRNOT00000108745
Ensembl Acc Id: ENSRNOP00000085072   ⟸   ENSRNOT00000100987
RefSeq Acc Id: NP_001382543   ⟸   NM_001395614
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001382542   ⟸   NM_001395613
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063144335   ⟸   XM_063288265
- Peptide Label: isoform X2
Protein Domains
CCHC-type   S1 motif

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCQ7-F1-model_v2 AlphaFold D3ZCQ7 1-241 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694084
Promoter ID:EPDNEW_R4608
Type:initiation region
Name:Zcchc17_1
Description:zinc finger CCHC-type containing 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05148,577,254 - 148,577,314EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565267 AgrOrtholog
BioCyc Gene G2FUF-39750 BioCyc
Ensembl Genes ENSRNOG00000012266 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000108745 ENTREZGENE
  ENSRNOT00000108745.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  Rbsml_prot_S1_RNA-bd_dom UniProtKB/TrEMBL
  ZCCHC17_S1 UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
KEGG Report rno:500555 UniProtKB/TrEMBL
NCBI Gene 500555 ENTREZGENE
PANTHER NUCLEOLAR PROTEIN OF 40 KDA UniProtKB/TrEMBL
  PTHR15838:SF1 UniProtKB/TrEMBL
Pfam PF00575 UniProtKB/TrEMBL
PhenoGen Zcchc17 PhenoGen
PROSITE PS50126 UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012266 RatGTEx
SMART SM00316 UniProtKB/TrEMBL
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
UniProt A0A8I5ZJN0 ENTREZGENE, UniProtKB/TrEMBL
  A6ISP0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCQ7 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zcchc17  zinc finger CCHC-type containing 17  Zcchc17  zinc finger, CCHC domain containing 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Zcchc17  zinc finger, CCHC domain containing 17  RGD1565267_predicted  similar to PS1D protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565267_predicted  similar to PS1D protein (predicted)  LOC500555  similar to PS1D protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500555  similar to PS1D protein      Symbol and Name status set to provisional 70820 PROVISIONAL