Rbmx (RNA binding motif protein, X-linked) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rbmx (RNA binding motif protein, X-linked) Rattus norvegicus
Analyze
Symbol: Rbmx
Name: RNA binding motif protein, X-linked
RGD ID: 1565256
Description: Enables single-stranded RNA binding activity. Involved in mRNA splice site recognition; positive regulation of DNA-templated transcription; and regulation of postsynapse organization. Is active in glutamatergic synapse and postsynaptic density. Human ortholog(s) of this gene implicated in X-linked mental retardation Gustavson type and syndromic X-linked intellectual disability Shashi type. Orthologous to several human genes including RBMX (RNA binding motif protein X-linked); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterogeneous nuclear ribonucleoprotein G; hnRNP G; hnRNP-G; LOC302855; MGC114544; RNA binding motif protein, X chromosome; RNA-binding motif protein, X chromosome; RNA-binding motif protein, X chromosome retrogene; RNA-binding motif protein, X chromosome retrogene-like; similar to heterogeneous nuclear ribonucleoprotein G - human
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,342,544 - 140,352,121 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX140,345,571 - 140,352,035 (-)EnsemblGRCr8
mRatBN7.2X135,305,237 - 135,314,806 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX135,305,325 - 135,314,743 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX137,505,126 - 137,511,592 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X141,062,859 - 141,069,326 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X138,632,261 - 138,638,728 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X159,881,835 - 159,891,405 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX159,884,885 - 159,891,326 (-)Ensemblrn6Rnor6.0
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X142,112,807 - 142,119,267 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX143,341,911 - 143,347,131 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
2,6-dimethoxyphenol  (ISO)
2-butoxyethanol  (ISO)
3',5'-cyclic UMP  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetazolamide  (ISO)
acrolein  (ISO)
actinomycin D  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coumarin  (ISO)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fructose  (EXP)
furfural  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
menadione  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentanal  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thapsigargin  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA. Heinrich B, etal., J Biol Chem. 2009 May 22;284(21):14303-15. Epub 2009 Mar 12.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. RBMX is a novel hepatic transcriptional regulator of SREBP-1c gene response to high-fructose diet. Takemoto T, etal., FEBS Lett. 2007 Jan 23;581(2):218-22. Epub 2006 Dec 14.
10. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
11. RNA binding proteins accumulate at the postsynaptic density with synaptic activity. Zhang G, etal., J Neurosci. 2012 Jan 11;32(2):599-609. doi: 10.1523/JNEUROSCI.2463-11.2012.
12. Expression of RBMX after spinal cord injury in rats. Zhang J, etal., J Mol Neurosci. 2013 Feb;49(2):417-29. doi: 10.1007/s12031-012-9914-2. Epub 2012 Nov 22.
Additional References at PubMed
PMID:10749975   PMID:11118435   PMID:11991638   PMID:12165565   PMID:12761049   PMID:16210410   PMID:18445477   PMID:18541147   PMID:21327109   PMID:22658674   PMID:22681889   PMID:23580065  
PMID:25407628   PMID:25416956   PMID:27107012   PMID:31505169   PMID:33450132  


Genomics

Comparative Map Data
Rbmx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,342,544 - 140,352,121 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX140,345,571 - 140,352,035 (-)EnsemblGRCr8
mRatBN7.2X135,305,237 - 135,314,806 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX135,305,325 - 135,314,743 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX137,505,126 - 137,511,592 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X141,062,859 - 141,069,326 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X138,632,261 - 138,638,728 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X159,881,835 - 159,891,405 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX159,884,885 - 159,891,326 (-)Ensemblrn6Rnor6.0
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X142,112,807 - 142,119,267 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX143,341,911 - 143,347,131 (-)NCBICelera
Cytogenetic MapXq36NCBI
RBMX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,869,192 - 136,880,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,848,004 - 136,880,764 (-)Ensemblhg38GRCh38
GRCh37X135,951,351 - 135,962,884 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,783,285 - 135,790,605 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X135,681,138 - 135,688,459NCBI
CeleraX136,315,008 - 136,326,547 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX125,221,196 - 125,232,578 (-)NCBIHuRef
CHM1_1X135,863,032 - 135,874,620 (-)NCBICHM1_1
T2T-CHM13v2.0X135,177,914 - 135,189,452 (-)NCBIT2T-CHM13v2.0
Rbmx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,428,708 - 56,438,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,428,890 - 56,438,396 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X57,383,348 - 57,393,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,383,530 - 57,393,036 (-)Ensemblmm10GRCm38
MGSCv37X54,636,525 - 54,646,213 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X53,733,142 - 53,739,810 (-)NCBIMGSCv36mm8
CeleraX43,859,557 - 43,869,048 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX31.64NCBI
Rbmx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554898,280,794 - 8,286,252 (+)Ensembl
ChiLan1.0NW_0049554898,280,842 - 8,286,252 (+)NCBIChiLan1.0ChiLan1.0
RBMX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X136,287,749 - 136,299,314 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X136,295,612 - 136,302,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,997,989 - 126,009,525 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X136,264,406 - 136,275,360 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX136,264,406 - 136,275,360 (-)EnsemblpanPan2panpan1.1
RBMX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X107,173,599 - 107,182,404 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX107,175,634 - 107,182,347 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX92,994,761 - 93,003,581 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X109,152,874 - 109,161,692 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX109,152,889 - 109,161,685 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X106,293,550 - 106,302,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X108,485,256 - 108,494,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X108,127,392 - 108,136,215 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbmx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X105,172,114 - 105,184,736 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,429,824 - 10,437,108 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,429,862 - 10,442,509 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,962,633 - 111,974,472 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X111,965,859 - 111,974,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,896,442 - 127,905,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBMX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,880,859 - 111,892,660 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606549,555,769 - 49,587,076 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbmx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480810,176,293 - 10,182,079 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480810,176,695 - 10,185,847 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbmx
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X117,822,539 - 117,829,168 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbmx
48 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:183
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000001154
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001154   ⟹   ENSRNOP00000001154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX140,345,571 - 140,352,035 (-)Ensembl
mRatBN7.2 EnsemblX135,308,264 - 135,314,743 (-)Ensembl
Rnor_6.0 EnsemblX159,884,885 - 159,891,326 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097092   ⟹   ENSRNOP00000089402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX140,346,162 - 140,352,035 (-)Ensembl
mRatBN7.2 EnsemblX135,305,325 - 135,314,743 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101124   ⟹   ENSRNOP00000094400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX140,345,571 - 140,352,035 (-)Ensembl
mRatBN7.2 EnsemblX135,305,325 - 135,314,743 (-)Ensembl
RefSeq Acc Id: NM_001025663   ⟹   NP_001020834
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,345,569 - 140,352,035 (-)NCBI
mRatBN7.2X135,308,264 - 135,314,730 (-)NCBI
Rnor_6.0X159,884,860 - 159,891,326 (-)NCBI
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBI
RGSC_v3.4X142,112,807 - 142,119,267 (-)RGD
CeleraX143,341,911 - 143,347,131 (-)RGD
Sequence:
RefSeq Acc Id: XM_006257680   ⟹   XP_006257742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,352,121 (-)NCBI
mRatBN7.2X135,305,239 - 135,314,806 (-)NCBI
Rnor_6.0X159,881,835 - 159,891,405 (-)NCBI
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257682   ⟹   XP_006257744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,352,111 (-)NCBI
mRatBN7.2X135,305,239 - 135,314,806 (-)NCBI
Rnor_6.0X159,881,835 - 159,891,405 (-)NCBI
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257683   ⟹   XP_006257745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,351,815 (-)NCBI
mRatBN7.2X135,305,239 - 135,314,412 (-)NCBI
Rnor_6.0X159,881,835 - 159,891,197 (-)NCBI
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602020   ⟹   XP_017457509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,352,121 (-)NCBI
mRatBN7.2X135,309,139 - 135,314,805 (-)NCBI
Rnor_6.0X159,886,256 - 159,891,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602021   ⟹   XP_017457510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,352,111 (-)NCBI
mRatBN7.2X135,305,237 - 135,314,805 (-)NCBI
Rnor_6.0X159,881,835 - 159,891,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063279966   ⟹   XP_063136036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,352,111 (-)NCBI
RefSeq Acc Id: XM_063279967   ⟹   XP_063136037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,342,544 - 140,352,111 (-)NCBI
RefSeq Acc Id: NP_001020834   ⟸   NM_001025663
- UniProtKB: Q4V898 (UniProtKB/Swiss-Prot),   A0A8I6AKQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257744   ⟸   XM_006257682
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006257742   ⟸   XM_006257680
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006257745   ⟸   XM_006257683
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017457510   ⟸   XM_017602021
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017457509   ⟸   XM_017602020
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000001154   ⟸   ENSRNOT00000001154
Ensembl Acc Id: ENSRNOP00000094400   ⟸   ENSRNOT00000101124
Ensembl Acc Id: ENSRNOP00000089402   ⟸   ENSRNOT00000097092
RefSeq Acc Id: XP_063136037   ⟸   XM_063279967
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063136036   ⟸   XM_063279966
- Peptide Label: isoform X2
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V898-F1-model_v2 AlphaFold Q4V898 1-390 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702075
Promoter ID:EPDNEW_R12599
Type:single initiation site
Name:Rbmx_1
Description:RNA binding motif protein, X-linked
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X159,891,344 - 159,891,404EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565256 AgrOrtholog
BioCyc Gene G2FUF-905 BioCyc
Ensembl Genes ENSRNOG00000000866 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001154 ENTREZGENE
  ENSRNOT00000097092.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7458559 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM UniProtKB/Swiss-Prot
  RBM1CTR UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  RRM_dom_euk UniProtKB/Swiss-Prot
KEGG Report rno:302855 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114544 IMAGE-MGC_LOAD
NCBI Gene 302855 ENTREZGENE
PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam RBM1CTR UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PharmGKB RBMX RGD
PhenoGen Rbmx PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000866 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8I6AKQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2PYP9_RAT UniProtKB/TrEMBL
  A6KSQ9_RAT UniProtKB/TrEMBL
  A6KSR2_RAT UniProtKB/TrEMBL
  Q4V898 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-24 Rbmx  RNA binding motif protein, X-linked  Rbmx  RNA binding motif protein, X chromosome  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Rbmx  RNA binding motif protein, X chromosome  LOC302855  similar to heterogeneous nuclear ribonucleoprotein G - human  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC302855  similar to heterogeneous nuclear ribonucleoprotein G - human      Symbol and Name status set to provisional 70820 PROVISIONAL