C15h14orf93 (similar to human chromosome 14 open reading frame 93) - Rat Genome Database

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Pathways
Gene: C15h14orf93 (similar to human chromosome 14 open reading frame 93) Rattus norvegicus
Analyze
Symbol: C15h14orf93
Name: similar to human chromosome 14 open reading frame 93
RGD ID: 1565222
Description: Predicted to act upstream of or within cell differentiation and positive regulation of gene expression. Orthologous to human C14orf93 (chromosome 14 open reading frame 93); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC498514; LOC498514; RGD1565222; similar to RIKEN cDNA 4931414P19; uncharacterized protein C14orf93 homolog; uncharacterized protein LOC498514
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,007,591 - 32,034,337 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,007,595 - 32,034,289 (-)EnsemblGRCr8
mRatBN7.21528,037,567 - 28,064,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,037,574 - 28,064,274 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1529,876,988 - 29,903,676 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,024,204 - 31,050,889 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,273,748 - 29,300,352 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,225,172 - 33,250,609 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,224,896 - 33,250,546 (-)Ensemblrn6Rnor6.0
Rnor_5.01537,109,226 - 37,143,944 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,656,277 - 32,688,050 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,616,290 - 27,642,915 (-)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:28230092  


Genomics

Comparative Map Data
C15h14orf93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,007,591 - 32,034,337 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,007,595 - 32,034,289 (-)EnsemblGRCr8
mRatBN7.21528,037,567 - 28,064,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,037,574 - 28,064,274 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1529,876,988 - 29,903,676 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,024,204 - 31,050,889 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,273,748 - 29,300,352 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,225,172 - 33,250,609 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,224,896 - 33,250,546 (-)Ensemblrn6Rnor6.0
Rnor_5.01537,109,226 - 37,143,944 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,656,277 - 32,688,050 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,616,290 - 27,642,915 (-)NCBICelera
Cytogenetic Map15p13NCBI
C14orf93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,985,894 - 23,010,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,985,894 - 23,010,529 (-)Ensemblhg38GRCh38
GRCh371423,455,103 - 23,479,352 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,525,951 - 22,549,192 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341422,525,950 - 22,549,192NCBI
Celera143,319,000 - 3,342,250 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,573,344 - 3,596,639 (-)NCBIHuRef
CHM1_11423,454,741 - 23,477,990 (-)NCBICHM1_1
T2T-CHM13v2.01417,186,512 - 17,210,763 (-)NCBIT2T-CHM13v2.0
4931414P19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,821,119 - 54,843,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,821,120 - 54,843,450 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381454,583,662 - 54,606,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,583,663 - 54,605,993 (-)Ensemblmm10GRCm38
MGSCv371455,202,500 - 55,224,745 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361453,537,868 - 53,560,113 (-)NCBIMGSCv36mm8
Celera1452,372,626 - 52,394,656 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.85NCBI
CUNH14orf93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,290,550 - 37,314,598 (+)Ensembl
ChiLan1.0NW_00495540937,290,615 - 37,315,297 (+)NCBIChiLan1.0ChiLan1.0
C15H14orf93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,419,703 - 24,431,943 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,636,188 - 23,648,298 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,807,076 - 3,830,892 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,905,028 - 21,928,242 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,905,028 - 21,928,242 (-)EnsemblpanPan2panpan1.1
C8H14orf93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,305,532 - 3,316,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,305,751 - 3,316,079 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha83,253,297 - 3,264,153 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.083,413,133 - 3,423,991 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,413,664 - 3,437,322 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,104,064 - 3,114,923 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,165,789 - 3,176,644 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,427,852 - 3,438,706 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH14orf93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,060,954 - 35,084,717 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,316,789 - 1,328,059 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,304,357 - 1,327,726 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H14orf93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,045,686 - 76,058,891 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1776,033,750 - 76,061,877 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
C29H14orf93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,356,885 - 23,381,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,355,798 - 23,369,839 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605923,038,445 - 23,063,808 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH14orf93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,524,499 - 9,548,765 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248209,524,566 - 9,548,650 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
C12H14orf93
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,391,938 - 70,423,168 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C15h14orf93
57 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:69
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000017857
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat

Markers in Region
RH131449  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,037,730 - 28,037,913 (+)MAPPERmRatBN7.2
Rnor_6.01533,225,336 - 33,225,518NCBIRnor6.0
Rnor_5.01537,109,390 - 37,109,572UniSTSRnor5.0
RGSC_v3.41532,656,434 - 32,656,616UniSTSRGSC3.4
Celera1527,616,447 - 27,616,629UniSTS
Cytogenetic Map15p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017857   ⟹   ENSRNOP00000017857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,007,595 - 32,034,289 (-)Ensembl
mRatBN7.2 Ensembl1528,037,574 - 28,064,274 (-)Ensembl
Rnor_6.0 Ensembl1533,224,896 - 33,250,546 (-)Ensembl
RefSeq Acc Id: NM_001109101   ⟹   NP_001102571
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,007,595 - 32,034,289 (-)NCBI
mRatBN7.21528,037,574 - 28,064,274 (-)NCBI
Rnor_6.01533,225,179 - 33,250,546 (-)NCBI
Rnor_5.01537,109,226 - 37,143,944 (-)NCBI
RGSC_v3.41532,656,277 - 32,688,050 (-)RGD
Celera1527,616,290 - 27,642,915 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252004   ⟹   XP_006252066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,007,591 - 32,034,175 (-)NCBI
mRatBN7.21528,037,567 - 28,064,301 (-)NCBI
Rnor_6.01533,225,172 - 33,248,165 (-)NCBI
Rnor_5.01537,109,226 - 37,143,944 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252005   ⟹   XP_006252067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,007,591 - 32,034,337 (-)NCBI
mRatBN7.21528,037,567 - 28,064,347 (-)NCBI
Rnor_6.01533,225,172 - 33,250,609 (-)NCBI
Rnor_5.01537,109,226 - 37,143,944 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093590   ⟹   XP_038949518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,007,591 - 32,034,175 (-)NCBI
mRatBN7.21528,037,567 - 28,064,301 (-)NCBI
RefSeq Acc Id: XM_039093591   ⟹   XP_038949519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,007,591 - 32,028,840 (-)NCBI
mRatBN7.21528,037,567 - 28,056,592 (-)NCBI
RefSeq Acc Id: NP_001102571   ⟸   NM_001109101
- UniProtKB: D4AB71 (UniProtKB/TrEMBL),   A6KGV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252067   ⟸   XM_006252005
- Peptide Label: isoform X1
- UniProtKB: D4AB71 (UniProtKB/TrEMBL),   A6KGV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252066   ⟸   XM_006252004
- Peptide Label: isoform X1
- UniProtKB: D4AB71 (UniProtKB/TrEMBL),   A6KGV0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017857   ⟸   ENSRNOT00000017857
RefSeq Acc Id: XP_038949518   ⟸   XM_039093590
- Peptide Label: isoform X1
- UniProtKB: D4AB71 (UniProtKB/TrEMBL),   A6KGV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949519   ⟸   XM_039093591
- Peptide Label: isoform X1
- UniProtKB: D4AB71 (UniProtKB/TrEMBL),   A6KGV0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AB71-F1-model_v2 AlphaFold D4AB71 1-542 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699655
Promoter ID:EPDNEW_R10178
Type:single initiation site
Name:RGD1565222_1
Description:similar to RIKEN cDNA 4931414P19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01533,250,557 - 33,250,617EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565222 AgrOrtholog
BioCyc Gene G2FUF-13793 BioCyc
Ensembl Genes ENSRNOG00000013317 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017857 ENTREZGENE
  ENSRNOT00000017857.8 UniProtKB/TrEMBL
InterPro DUF4616 UniProtKB/TrEMBL
KEGG Report rno:498514 UniProtKB/TrEMBL
NCBI Gene 498514 ENTREZGENE
PANTHER PTHR14375 UniProtKB/TrEMBL
  SIMILAR TO RIKEN CDNA 4931414P19 UniProtKB/TrEMBL
Pfam DUF4616 UniProtKB/TrEMBL
PhenoGen C15h14orf93 PhenoGen
RatGTEx ENSRNOG00000013317 RatGTEx
UniProt A6KGV0 ENTREZGENE, UniProtKB/TrEMBL
  D4AB71 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C15h14orf93  similar to human chromosome 14 open reading frame 93  RGD1565222  similar to RIKEN cDNA 4931414P19  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1565222  similar to RIKEN cDNA 4931414P19   RGD1565222_predicted  similar to RIKEN cDNA 4931414P19 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565222_predicted  similar to RIKEN cDNA 4931414P19 (predicted)  LOC498514  similar to RIKEN cDNA 4931414P19  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498514  similar to RIKEN cDNA 4931414P19      Symbol and Name status set to provisional 70820 PROVISIONAL