Rpl26-ps2 (ribosomal protein L26, pseudogene 2) - Rat Genome Database

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Gene: Rpl26-ps2 (ribosomal protein L26, pseudogene 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl26-ps2
Name: ribosomal protein L26, pseudogene 2
RGD ID: 1565215
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal large subunit biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL26L1 (ribosomal protein L26 like 1); INTERACTS WITH rotenone.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: ENSRNOG00000069113; LOC498998; RGD1565215; similar to 60S ribosomal protein L26
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl26  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,746,527 - 30,747,010 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl130,729,394 - 30,747,204 (-)EnsemblGRCr8
mRatBN7.2128,917,937 - 28,918,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,917,918 - 28,918,443 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl128,917,918 - 28,918,443 (-)NCBImRatBN7.2
UTH_Rnor_SHR_Utx128,719,092 - 28,719,575 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,718,946 - 34,719,429 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,919,714 - 28,920,197 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,527,605 - 31,528,088 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0132,953,720 - 32,954,277 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4129,721,335 - 29,721,811 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera127,569,784 - 27,570,267 (-)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
rotenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl26-ps2
6 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000061041   ⟹   ENSRNOP00000057758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl130,746,369 - 30,747,204 (-)Ensembl
mRatBN7.2 Ensembl128,917,918 - 28,918,443 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000073744   ⟹   ENSRNOP00000067887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl130,729,394 - 30,747,048 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000057758.2
  ENSRNOP00000067887.4
Ensembl Acc Id: ENSRNOP00000057758   ⟸   ENSRNOT00000061041
Ensembl Acc Id: ENSRNOP00000067887   ⟸   ENSRNOT00000073744
Protein Domains
KOW

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565215 AgrOrtholog
BioCyc Gene G2FUF-61949 BioCyc
Ensembl Genes ENSRNOG00000069113 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061041.3 UniProtKB/TrEMBL
  ENSRNOT00000073744.4 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL26/RPL24 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L24/26_CS UniProtKB/TrEMBL
  Ribosomal_L26/L24P_euk/arc UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene 498998 ENTREZGENE
PANTHER PTHR11143 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L26 UniProtKB/TrEMBL
PhenoGen Rpl26-ps2 PhenoGen
PROSITE RIBOSOMAL_L24 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000069113 RatGTEx
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt D4A1Z2_RAT UniProtKB/TrEMBL
  M0RE23_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rpl26-ps2  ribosomal protein L26, pseudogene 2  ENSRNOG00000069113    Data merged from RGD:150342858 737654 PROVISIONAL
2021-08-31 ENSRNOG00000069113        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-01-14 Rpl26-ps2  ribosomal protein L26, pseudogene 2  RGD1565215  similar to 60S ribosomal protein L26  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565215  similar to 60S ribosomal protein L26   RGD1565215_predicted  similar to 60S ribosomal protein L26 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565215_predicted  similar to 60S ribosomal protein L26 (predicted)  LOC498998  similar to 60S ribosomal protein L26  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498998  similar to 60S ribosomal protein L26      Symbol and Name status set to provisional 70820 PROVISIONAL