Tmco5a (transmembrane and coiled-coil domains 5A) - Rat Genome Database

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Gene: Tmco5a (transmembrane and coiled-coil domains 5A) Rattus norvegicus
Analyze
Symbol: Tmco5a
Name: transmembrane and coiled-coil domains 5A
RGD ID: 1565206
Description: Predicted to be located in endoplasmic reticulum membrane and nuclear membrane. Orthologous to human TMCO5A (transmembrane and coiled-coil domains 5A); INTERACTS WITH bisphenol A; fenvalerate; Monobutylphthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC499865; RGD1565206; similar to RIKEN cDNA 1700095F04; Tmco5; transmembrane and coiled-coil domain-containing protein 5A; transmembrane and coiled-coil domains 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83124,187,005 - 124,200,308 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3124,187,067 - 124,200,308 (+)EnsemblGRCr8
mRatBN7.23103,732,936 - 103,746,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3103,732,945 - 103,746,249 (+)EnsemblmRatBN7.2
Rnor_6.03108,544,922 - 108,559,448 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3108,544,931 - 108,559,476 (+)Ensemblrn6Rnor6.0
Rnor_5.03115,103,210 - 115,117,723 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43102,926,118 - 102,938,803 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3102,669,952 - 102,683,312 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30632224  


Genomics

Comparative Map Data
Tmco5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83124,187,005 - 124,200,308 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3124,187,067 - 124,200,308 (+)EnsemblGRCr8
mRatBN7.23103,732,936 - 103,746,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3103,732,945 - 103,746,249 (+)EnsemblmRatBN7.2
Rnor_6.03108,544,922 - 108,559,448 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3108,544,931 - 108,559,476 (+)Ensemblrn6Rnor6.0
Rnor_5.03115,103,210 - 115,117,723 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43102,926,118 - 102,938,803 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3102,669,952 - 102,683,312 (+)NCBICelera
Cytogenetic Map3q35NCBI
TMCO5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381537,934,640 - 38,040,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1537,921,858 - 37,967,724 (+)Ensemblhg38GRCh38
GRCh371538,226,841 - 38,287,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361536,014,749 - 36,030,915 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1514,993,884 - 15,010,043 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1515,072,742 - 15,088,901 (+)NCBIHuRef
CHM1_11538,346,745 - 38,362,904 (+)NCBICHM1_1
T2T-CHM13v2.01535,739,894 - 35,846,092 (+)NCBIT2T-CHM13v2.0
Tmco5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392116,709,174 - 116,722,987 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2116,709,172 - 116,722,975 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382116,878,693 - 116,892,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2116,878,691 - 116,892,494 (+)Ensemblmm10GRCm38
MGSCv372116,704,427 - 116,718,236 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362116,570,149 - 116,583,935 (+)NCBIMGSCv36mm8
Celera2118,003,393 - 118,017,200 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.03NCBI
Tmco5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554165,030,657 - 5,045,691 (+)Ensembl
ChiLan1.0NW_0049554165,030,720 - 5,045,420 (+)NCBIChiLan1.0ChiLan1.0
TMCO5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21627,161,654 - 27,224,228 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11531,315,343 - 31,375,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01516,864,593 - 16,897,708 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11535,119,191 - 35,152,283 (+)NCBIPanPan1.1PanPan1.1panPan2
TMCO5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1305,332,366 - 5,352,069 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl305,333,057 - 5,347,513 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha305,384,608 - 5,404,305 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0305,453,031 - 5,472,729 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl305,453,135 - 5,473,403 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1305,379,065 - 5,398,761 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0305,477,065 - 5,496,757 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0305,613,028 - 5,632,721 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmco5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864083,853,531 - 83,867,951 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364711,702,243 - 1,715,822 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364711,702,243 - 1,715,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMCO5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1133,285,037 - 133,302,309 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11133,291,660 - 133,383,696 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21148,817,053 - 148,833,338 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMCO5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12645,001,265 - 45,040,160 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2645,023,323 - 45,038,035 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604895,890,731 - 95,919,689 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmco5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248045,243,444 - 5,257,568 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmco5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1595,027,891 - 95,042,002 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmco5a
118 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:97
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000006794, ENSRNOT00000006809
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
5 6 5 45 16 25 5 7 5 4 35 18 1 39 2 26 20

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006809   ⟹   ENSRNOP00000006809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3124,187,068 - 124,200,308 (+)Ensembl
mRatBN7.2 Ensembl3103,732,945 - 103,746,249 (+)Ensembl
Rnor_6.0 Ensembl3108,544,931 - 108,559,476 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103870   ⟹   ENSRNOP00000085222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3124,187,067 - 124,200,301 (+)Ensembl
mRatBN7.2 Ensembl3103,732,945 - 103,746,249 (+)Ensembl
RefSeq Acc Id: XM_039106479   ⟹   XP_038962407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,613 - 124,200,308 (+)NCBI
mRatBN7.23103,733,023 - 103,746,242 (+)NCBI
RefSeq Acc Id: XM_039106480   ⟹   XP_038962408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,188,345 - 124,200,308 (+)NCBI
mRatBN7.23103,733,574 - 103,746,242 (+)NCBI
RefSeq Acc Id: XM_039106485   ⟹   XP_038962413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,061 - 124,200,308 (+)NCBI
mRatBN7.23103,733,054 - 103,746,242 (+)NCBI
RefSeq Acc Id: XM_063285294   ⟹   XP_063141364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,091 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285295   ⟹   XP_063141365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,092 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285296   ⟹   XP_063141366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,090 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285297   ⟹   XP_063141367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,006 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285298   ⟹   XP_063141368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,005 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285299   ⟹   XP_063141369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,061 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285300   ⟹   XP_063141370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,061 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285301   ⟹   XP_063141371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,005 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285302   ⟹   XP_063141372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,092 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285303   ⟹   XP_063141373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,089 - 124,200,308 (+)NCBI
RefSeq Acc Id: XM_063285304   ⟹   XP_063141374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83124,187,006 - 124,200,308 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001417705 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417706 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417708 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417709 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417710 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417711 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417713 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417714 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962413 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141364 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141365 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141366 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141367 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141368 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141369 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141370 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141371 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141372 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141373 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141374 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZNV2 (Get FASTA)   NCBI Sequence Viewer  
  EDL79842 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006809
  ENSRNOP00000006809.6
  ENSRNOP00000085222
  ENSRNOP00055003943
  ENSRNOP00060032333
Ensembl Acc Id: ENSRNOP00000006809   ⟸   ENSRNOT00000006809
RefSeq Acc Id: XP_038962407   ⟸   XM_039106479
- Peptide Label: isoform X1
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962413   ⟸   XM_039106485
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038962408   ⟸   XM_039106480
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000085222   ⟸   ENSRNOT00000103870
RefSeq Acc Id: XP_063141368   ⟸   XM_063285298
- Peptide Label: isoform X6
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141371   ⟸   XM_063285301
- Peptide Label: isoform X8
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141367   ⟸   XM_063285297
- Peptide Label: isoform X5
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141374   ⟸   XM_063285304
- Peptide Label: isoform X11
- UniProtKB: A6HP91 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141370   ⟸   XM_063285300
- Peptide Label: isoform X7
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141369   ⟸   XM_063285299
- Peptide Label: isoform X6
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141373   ⟸   XM_063285303
- Peptide Label: isoform X10
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141366   ⟸   XM_063285296
- Peptide Label: isoform X4
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141364   ⟸   XM_063285294
- Peptide Label: isoform X2
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141365   ⟸   XM_063285295
- Peptide Label: isoform X3
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141372   ⟸   XM_063285302
- Peptide Label: isoform X9
- UniProtKB: A0ABB2WVR8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZNV2-F1-model_v2 AlphaFold D3ZNV2 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692304
Promoter ID:EPDNEW_R2826
Type:multiple initiation site
Name:Tmco5a_1
Description:transmembrane and coiled-coil domains 5A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03108,544,969 - 108,545,029EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565206 AgrOrtholog
BioCyc Gene G2FUF-48287 BioCyc
Ensembl Genes ENSRNOG00000005100 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055003423 UniProtKB/Swiss-Prot
  ENSRNOG00060022554 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006809 ENTREZGENE
  ENSRNOT00000006809.8 UniProtKB/Swiss-Prot
  ENSRNOT00000103870 ENTREZGENE
  ENSRNOT00055005315 UniProtKB/Swiss-Prot
  ENSRNOT00060039104 UniProtKB/Swiss-Prot
InterPro SMCO2/5 UniProtKB/Swiss-Prot
NCBI Gene 499865 ENTREZGENE
PANTHER TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 5A UniProtKB/Swiss-Prot
  TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 5B-RELATED UniProtKB/Swiss-Prot
Pfam TMCO5 UniProtKB/Swiss-Prot
PhenoGen Tmco5a PhenoGen
RatGTEx ENSRNOG00000005100 RatGTEx
  ENSRNOG00055003423 RatGTEx
  ENSRNOG00060022554 RatGTEx
UniProt A0ABB2WVR8 ENTREZGENE, UniProtKB/TrEMBL
  A6HP91 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNV2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A8I6A3G0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-25 Tmco5a  transmembrane and coiled-coil domains 5A  Tmco5  transmembrane and coiled-coil domains 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Tmco5  transmembrane and coiled-coil domains 5  RGD1565206_predicted  similar to RIKEN cDNA 1700095F04 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 RGD1565206_predicted  similar to RIKEN cDNA 1700095F04 (predicted)  LOC687958  hypothetical protein LOC687958  Data merged from RGD:1594890 1643240 APPROVED
2006-11-20 LOC687958  hypothetical protein LOC687958      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1565206_predicted  similar to RIKEN cDNA 1700095F04 (predicted)  LOC499865  similar to RIKEN cDNA 1700095F04  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499865  similar to RIKEN cDNA 1700095F04      Symbol and Name status set to provisional 70820 PROVISIONAL