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Gene: Ablim3 (actin binding LIM protein family, member 3) Rattus norvegicus

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Symbol:

Ablim3

Name:

actin binding LIM protein family, member 3

RGD ID:

1565118

Description:

Predicted to enable actin filament binding activity. Predicted to be involved in cilium assembly and lamellipodium assembly. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in lamellipodium. Predicted to be active in glutamatergic synapse and stress fiber. Orthologous to human ABLIM3 (actin binding LIM protein family member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

actin-binding LIM protein 3; LOC307395; RGD1565118; similar to mKIAA0843 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABLIM3 (actin binding LIM protein family member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ablim3 (actin binding LIM protein family, member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ablim3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABLIM3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABLIM3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ablim3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABLIM3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABLIM3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ablim3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ablim3 (actin binding LIM protein family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ABLIM3 (actin binding LIM protein family member 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ablim3 (actin binding LIM protein family, member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ablim3 (actin binding LIM protein family, member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ablim3 (actin binding LIM protein family, member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ablim3 (actin binding LIM protein family, member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Unc-115a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Unc-115a	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-115	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-115	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ablim3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	57,527,917 - 57,646,936 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	57,527,917 - 57,646,710 (-)	Ensembl				GRCr8
mRatBN7.2	18	55,256,135 - 55,376,629 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	55,257,583 - 55,376,380 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	57,351,192 - 57,468,656 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	58,065,768 - 58,183,586 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	55,881,446 - 56,000,234 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	57,126,534 - 57,245,965 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	57,128,399 - 57,245,666 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	56,354,869 - 56,474,025 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	57,781,588 - 57,900,968 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	53,406,643 - 53,525,162 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP,ISO)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

cantharidin (ISO)

carbon nanotube (ISO)

choline (ISO)

cobalt dichloride (EXP)

copper(II) chloride (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

leflunomide (ISO)

metformin (EXP)

methapyrilene (EXP,ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (ISO)

N-nitrosodimethylamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

orphenadrine (EXP)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

Ptaquiloside (ISO)

quercetin (ISO)

raloxifene (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

Soman (EXP)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IBA,ISO)

cytoskeleton organization (IEA)

lamellipodium assembly (IBA,ISO)

obsolete positive regulation of protein targeting to mitochondrion (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

transcription by RNA polymerase II (IEA)

Cellular Component

actin cytoskeleton (IBA)

cytoplasm (IEA)

glutamatergic synapse (ISO)

lamellipodium (ISO)

stress fiber (IBA,ISO)

synapse (ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17194709	PMID:20709423	PMID:22684256	PMID:24270810

Genomics

Comparative Map Data

Ablim3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	57,527,917 - 57,646,936 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	57,527,917 - 57,646,710 (-)	Ensembl				GRCr8
mRatBN7.2	18	55,256,135 - 55,376,629 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	55,257,583 - 55,376,380 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	57,351,192 - 57,468,656 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	58,065,768 - 58,183,586 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	55,881,446 - 56,000,234 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	57,126,534 - 57,245,965 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	57,128,399 - 57,245,666 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	56,354,869 - 56,474,025 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	57,781,588 - 57,900,968 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	53,406,643 - 53,525,162 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

ABLIM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	149,141,493 - 149,260,542 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	149,141,483 - 149,260,542 (+)	Ensembl			hg38	GRCh38
GRCh37	5	148,521,056 - 148,640,105 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	148,501,247 - 148,620,192 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	148,501,325 - 148,620,192	NCBI
Celera	5	144,603,161 - 144,721,993 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	143,667,657 - 143,786,427 (+)	NCBI		HuRef
CHM1_1	5	147,953,549 - 148,072,434 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	149,676,400 - 149,795,360 (+)	NCBI		T2T-CHM13v2.0

Ablim3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	61,932,463 - 62,044,956 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	61,932,463 - 62,044,895 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	61,799,392 - 61,911,885 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	61,799,392 - 61,911,824 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	61,959,046 - 62,071,506 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	61,924,763 - 62,037,167 (-)	NCBI		MGSCv36	mm8
Celera	18	63,085,016 - 63,197,614 (-)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	34.77	NCBI

Ablim3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	5,153,410 - 5,261,042 (-)	Ensembl
ChiLan1.0	NW_004955415	5,151,445 - 5,261,300 (-)	NCBI	ChiLan1.0	ChiLan1.0

ABLIM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	144,372,654 - 144,491,221 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	142,512,200 - 142,630,770 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	144,568,394 - 144,686,983 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	150,576,568 - 150,697,271 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	150,576,604 - 150,697,271 (+)	Ensembl			panPan2	panpan1.1

ABLIM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	59,688,779 - 59,798,456 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	59,690,735 - 59,798,383 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	59,453,388 - 59,563,033 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	60,171,352 - 60,281,191 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	60,171,361 - 60,281,200 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	59,957,915 - 60,067,722 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	60,072,443 - 60,182,136 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	60,602,832 - 60,712,537 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ablim3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	144,024,213 - 144,135,492 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	5,600,253 - 5,708,857 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	5,598,186 - 5,709,505 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABLIM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	150,260,196 - 150,423,212 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	150,260,185 - 150,423,214 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	157,141,854 - 157,186,531 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABLIM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	51,763,179 - 51,882,083 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	51,763,226 - 51,882,383 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	25,865,160 - 25,984,782 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ablim3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	8,510,907 - 8,629,090 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624774	8,510,132 - 8,631,034 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ablim3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	70,035,833 - 70,153,863 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ablim3
860 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	52
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000026227
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331730	Scl27	Serum cholesterol level QTL 27	3.826		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	54490801	86134022	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
1331736	Bp227	Blood pressure QTL 227	2.791		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	48917054	60064728	Rat
1300125	Rf26	Renal function QTL 26	3.2		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	18	53350521	68120379	Rat
631834	Sach3	Saccharin preference QTL 3	3.9	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	18	38575919	83575919	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26822186	71822186	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26822186	71822186	Rat
6893683	Bw110	Body weight QTL 110	2.7	0.002	body mass (VT:0001259)	body weight (CMO:0000012)	18	45620306	86134022	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26822186	71822186	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	63968306	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26822186	71822186	Rat
9589041	Epfw12	Epididymal fat weight QTL 12	17.08	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	18	48915737	86134022	Rat
8694432	Bw165	Body weight QTL 165	3.81	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	48915737	86134022	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26822186	71822186	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26822186	71822186	Rat
70185	BpQTLcluster15	Blood pressure QTL cluster 15	4.61		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	18	53845175	61982387	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	31990891	76990891	Rat
1331770	Bp234	Blood pressure QTL 234	3.807		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	45620306	86134022	Rat
61360	Eaey	Experimental allergic encephalomyelitis QTL y	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	18	49187226	62647720	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31610505	85493247	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	33379158	78379158	Rat
61367	Iddm4	Insulin dependent diabetes mellitus QTL 4	2.33	0.0074	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	40462383	85462383	Rat
1359020	Ppulsi2	Prepulse inhibition QTL 2	2.71		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	18	54490801	76272247	Rat
1331752	Bw27	Body weight QTL 27	2.963		body mass (VT:0001259)	body weight (CMO:0000012)	18	54490801	68120379	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	31990891	76990891	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	33379158	78379158	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	33379158	78379158	Rat
2303584	Gluco55	Glucose level QTL 55	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	18	50795212	86134022	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	33379158	78379158	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26822186	71822186	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31522783	76522783	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	33379158	78379158	Rat
1331806	Bp229	Blood pressure QTL 229	4.36484		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	48917054	60064728	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	33379158	78379158	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	33379158	78379158	Rat
1331780	Bp238	Blood pressure QTL 238	3.269		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	48917054	60064728	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31610505	77371277	Rat
631518	Bw11	Body weight QTL 11	2.8		body mass (VT:0001259)	body weight (CMO:0000012)	18	36121626	81121626	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	31990891	76990891	Rat
8694366	Abfw8	Abdominal fat weight QTL 8	6.38	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	18	48915737	86134022	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	26415821	71415821	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31644508	79484311	Rat
1598832	Glom11	Glomerulus QTL 11	2.9		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	53266671	86134022	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	31990891	76990891	Rat
2303571	Bw92	Body weight QTL 92	3		body mass (VT:0001259)	body weight (CMO:0000012)	18	50795212	86134022	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31610505	72538878	Rat
7411719	Strs5	Sensitivity to stroke QTL 5	9.4		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	18	52198059	68120379	Rat

Markers in Region

BE120588

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	55,374,444 - 55,374,658 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	57,243,764 - 57,243,977	NCBI	Rnor6.0
Rnor_5.0	18	56,471,842 - 56,472,055	UniSTS	Rnor5.0
RGSC_v3.4	18	57,899,033 - 57,899,246	UniSTS	RGSC3.4
Celera	18	53,523,227 - 53,523,440	UniSTS
RH 3.4 Map	18	543.8	UniSTS
Cytogenetic Map	18	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	154	91	90	59	43	59	6	307	143	11	133	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026227 ⟹ ENSRNOP00000026227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,535,481 - 57,602,179 (-)	Ensembl
mRatBN7.2 Ensembl	18	55,265,147 - 55,331,844 (-)	Ensembl
Rnor_6.0 Ensembl	18	57,128,399 - 57,201,740 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080365 ⟹ ENSRNOP00000074499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,527,917 - 57,646,710 (-)	Ensembl
mRatBN7.2 Ensembl	18	55,257,583 - 55,376,380 (-)	Ensembl
Rnor_6.0 Ensembl	18	57,132,050 - 57,245,666 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100056 ⟹ ENSRNOP00000096749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,527,917 - 57,646,710 (-)	Ensembl
mRatBN7.2 Ensembl	18	55,257,583 - 55,376,380 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101487 ⟹ ENSRNOP00000089528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,527,917 - 57,646,710 (-)	Ensembl
mRatBN7.2 Ensembl	18	55,257,583 - 55,376,380 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107734 ⟹ ENSRNOP00000087213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,527,917 - 57,601,607 (-)	Ensembl
mRatBN7.2 Ensembl	18	55,257,583 - 55,376,380 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144527 ⟹ ENSRNOP00000102412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,527,917 - 57,601,607 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148870 ⟹ ENSRNOP00000109812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	57,527,917 - 57,601,598 (-)	Ensembl

RefSeq Acc Id:

NM_001191698 ⟹ NP_001178627

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,527,917 - 57,646,710 (-)	NCBI
mRatBN7.2	18	55,257,583 - 55,376,380 (-)	NCBI
Rnor_6.0	18	57,127,982 - 57,245,699 (-)	NCBI
Rnor_5.0	18	56,354,869 - 56,474,025 (-)	NCBI
Celera	18	53,406,643 - 53,525,162 (-)	NCBI

Sequence:

show sequence

ACACCCCCTTCGGGCTCCGCAGCCTGCCGGCTGGGATAACGCGGGGTGCGCACGAGCCGGCGCT
GCCAGCCTCGCTACTGCCCGGGGTTCGGGTCCCAGGTGCTGAGGACGAAGCACCTGAGTCCTCC
TCGCCTGCCCCTCCTCTCTGTTCACCTGCCCTGTTCGTCCACTCGCCTTAAAGGCCAGCGGCTC
CAGCCCAGACGGAGAGGGGCCAGCAGGGGGAGAGCGCACCTGAGGATACACAGCTGGCCCTGCT
CTGCCTTTTCACCCTTAGGTGATGAGTGAGGCCAGGAGAAGAACACAAGATTTAAAAAGCAACC
CGGGCCTCCGTTTTGAATGAACGACCCAGAGCAAAGGCATCACCATGAACACGAGCATTCCTTA
CCAGCAGAGTCCGTACAGTCCCCGGGGCAGCTCCAACGTCATCCAGTGCTACCGCTGCGGAGAC
ACCTGCAAAGGAGAGGTGGTCCGTGTCCACAACAACCACTTCCACATCAGATGCTTCACTTGTC
AAGTATGTGGATGTGGCCTGGCCCAGTCGGGCTTCTTCTTCAAGAACCAGGAGTACATCTGCAC
CCAGGATTACCAGCAGCTCTATGGCACCCGCTGTGACAGCTGCCGGGACTTCATCACGGGGGAG
GTCATCTCCGCCCTGGGCCGCACCTACCACCCTAAGTGCTTCGTGTGCAGCCTGTGCAGGAAGC
CTTTCCCTATTGGAGATAAGGTGACCTTCAGTGGTAAAGAATGTGTCTGTCAGACGTGCTCCCA
GTCGATGACCAGCAGCAAGCCAATCAAGATCCGTGGACCAAGCCACTGTGCTGGGTGCAAAGAG
GAGATTAAACACGGCCAGTCACTCCTGGCACTGGACAAGCAATGGCACGTCAGCTGTTTCAAAT
GCCAGACCTGTAGCGTCATCCTCACTGGGGAATACATTAGCAAGGATGGTGTTCCGTACTGCGA
GTCTGATTACCACGCCCAGTTTGGCATCAAATGTGAGACTTGTGACCGGTACATCAGTGGCAGG
GTCTTGGAGGCAGGAGGAAAACACTACCACCCTACCTGTGCCAGATGTGTGCGCTGCCACCAGA
TGTTCACTGAAGGGGAGGAGATGTACCTCACAGGTTCTGAGGTTTGGCACCCGATCTGCAAGCA
GGCAGCCAGGGCAGAGAAGAAGCTCAAGCATAGACGGACATCTGAAACTTCCATCTCACCCCCC
GGATCCAGCATCGGGTCGCCTAACCGAGTCATCTGTGCTAAAGTGGATAATGAGATCCTTAATT
ACAAAGACCTGGCGGCTCTCCCCAAGGTTAAGTCCATCTACGAGGTGCAACGTCCCAACCTCAT
TTCCTACGAGCCTCATTCCAGATACACCTCCGACGAGATGCTGGAGAGATGCGGTTACGGAGAG
TCACTGGGAACATTATCTCCTTACTCCCAGGACATCTATGAGAACTTGGACCTCCGGCAGAGAC
GGGCCTCCAGCCCGGGATACATCGATTCCCCCACCTACAGTCAGCAAGGCATGTCTCCCACCTT
CTCCCGCTCACCTCATCATTACTACCGCTCAGGGCCTGAGAGTGGCCGGAGCTCTCCGTACCAT
AGCCAGTTAGATGTGAGGTCCTCCACTCCGACCTCTTACCAGGCTCCTAAGCACTTTCATATCC
CAGCTGGAGAAAGTAACATCTACCGAAAACCCCCGATCTACAAACGGCATGGTGATTTGTCCAC
AGCAACCAAGAGCAAGACGAGTGAAGACATCAGCCAGGCCTCCAAGTACAGCCCAGCCTACTCA
CCAGACCCCTACTATGCTTCAGAGTCTGACTATTGGACCTACCATGGGTCCCCCAAAGTGCCCA
GAGCCAGAAGGTTCTCATCTGGAGGAGAGGAAGACGATTTTGACCGCAGTATGCACAAGCTCCA
GAGTGGAATTGGCCGGCTGATTCTGAAGGAAGAAATGAAGGCACGATCAAGCTCCTATGCGGAT
CCTTGGACCCCTCCGCGGAGCTCCACCAGCAGTCGGGAGGCCCTGCACACCACTGGCTATGAGA
TGTCCTTCAATGGCTCCCCCCGTTCACACTACCTGGCTGACAGTGACCCTCTCATCTCCAAGTC
TGCCTCACTGCCTGCCTACAGGAGAAATGGGCTGCACAGGACACCCAGTGCCGACCTCTTCCAC
TACGACAGCATGAACGCAGTCAACTGGGGCATGCGAGAGTACAAGATCTACCCATATGAGCTGC
TGCTGGTGACCACAAGAGGAAGGAACCGGCTGCCAAAGGATGTGGACCGAACTCGCTTAGAGCG
CCACCTGTCCCAGGAGGAGTTCTACCAAGTCTTCGGCATGACCATCTCAGAGTTCGAGAGGCTA
GCCCTCTGGAAGAGGAATGAACTGAAGAAGCAAGCCCGGCTGTTCTAGGCGGAGGCTGTATACA
TATAGATGCGTTTATATAAAGATGTATGTAAATCTCTATCCTGACACACAGTCTAGTCCTCTTG
TATAATGGAACCCAACACGCTGCCTGCCAGGAGACTCGCTTTCCCGTACTGTCAGGCAAGCCCA
CACCACCGAGGTATTTTTATGCTCCTTACTTCTCTTTTCTACGTGCCATGGGGATCTGGGAAAG
AATTCGAAGGGACTTCCATCCTTTTGCTGGGGATCCTTTTTATACTGAGACATCTGTCCCACCT
TGAGTCCCCAAGGTCCAACTCTCCTTTTAAAAGGTGCCTGGAGGAGCCTCTACTCCCCGTTGCA
GGATCTTTCCCCAGTCGCCAGGGCTGATGTTTTCACACACTGTGGTCACCGCTGGGCCCTCCGG
CGGAAGGTCCTCGGGGA

hide sequence

RefSeq Acc Id:

XM_063277346 ⟹ XP_063133416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,436 (-)	NCBI

RefSeq Acc Id:

XM_063277347 ⟹ XP_063133417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,936 (-)	NCBI

RefSeq Acc Id:

XM_063277348 ⟹ XP_063133418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,936 (-)	NCBI

RefSeq Acc Id:

XM_063277349 ⟹ XP_063133419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,936 (-)	NCBI

RefSeq Acc Id:

XM_063277350 ⟹ XP_063133420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,936 (-)	NCBI

RefSeq Acc Id:

XM_063277351 ⟹ XP_063133421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,936 (-)	NCBI

RefSeq Acc Id:

XM_063277352 ⟹ XP_063133422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,843 (-)	NCBI

RefSeq Acc Id:

XM_063277353 ⟹ XP_063133423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	57,528,280 - 57,646,843 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178627	(Get FASTA)	NCBI Sequence Viewer
	XP_063133416	(Get FASTA)	NCBI Sequence Viewer
	XP_063133417	(Get FASTA)	NCBI Sequence Viewer
	XP_063133418	(Get FASTA)	NCBI Sequence Viewer
	XP_063133419	(Get FASTA)	NCBI Sequence Viewer
	XP_063133420	(Get FASTA)	NCBI Sequence Viewer
	XP_063133421	(Get FASTA)	NCBI Sequence Viewer
	XP_063133422	(Get FASTA)	NCBI Sequence Viewer
	XP_063133423	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14622	(Get FASTA)	NCBI Sequence Viewer
	EDM14623	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026227
	ENSRNOP00000026227.4
	ENSRNOP00000074499
	ENSRNOP00000074499.2
	ENSRNOP00000087213
	ENSRNOP00000087213.2
	ENSRNOP00000089528.2
	ENSRNOP00000096749.2
	ENSRNOP00000102412.1
	ENSRNOP00000109812.1

RefSeq Acc Id:

NP_001178627 ⟸ NM_001191698

- UniProtKB:

A0A0G2K875 (UniProtKB/TrEMBL), A0A8I6AVJ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNTSIPYQQSPYSPRGSSNVIQCYRCGDTCKGEVVRVHNNHFHIRCFTCQVCGCGLAQSGFFFK
NQEYICTQDYQQLYGTRCDSCRDFITGEVISALGRTYHPKCFVCSLCRKPFPIGDKVTFSGKEC
VCQTCSQSMTSSKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISK
DGVPYCESDYHAQFGIKCETCDRYISGRVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEV
WHPICKQAARAEKKLKHRRTSETSISPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYE
VQRPNLISYEPHSRYTSDEMLERCGYGESLGTLSPYSQDIYENLDLRQRRASSPGYIDSPTYSQ
QGMSPTFSRSPHHYYRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYK
RHGDLSTATKSKTSEDISQASKYSPAYSPDPYYASESDYWTYHGSPKVPRARRFSSGGEEDDFD
RSMHKLQSGIGRLILKEEMKARSSSYADPWTPPRSSTSSREALHTTGYEMSFNGSPRSHYLADS
DPLISKSASLPAYRRNGLHRTPSADLFHYDSMNAVNWGMREYKIYPYELLLVTTRGRNRLPKDV
DRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKKQARLF

hide sequence

Ensembl Acc Id:

ENSRNOP00000074499 ⟸ ENSRNOT00000080365

Ensembl Acc Id:

ENSRNOP00000026227 ⟸ ENSRNOT00000026227

Ensembl Acc Id:

ENSRNOP00000096749 ⟸ ENSRNOT00000100056

Ensembl Acc Id:

ENSRNOP00000089528 ⟸ ENSRNOT00000101487

Ensembl Acc Id:

ENSRNOP00000087213 ⟸ ENSRNOT00000107734

RefSeq Acc Id:	XP_063133421 ⟸ XM_063277351
- Peptide Label:	isoform X6
- UniProtKB:	A6IXJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133417 ⟸ XM_063277347
- Peptide Label:	isoform X2
- UniProtKB:	A6IXJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133420 ⟸ XM_063277350
- Peptide Label:	isoform X5
- UniProtKB:	A6IXJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133419 ⟸ XM_063277349
- Peptide Label:	isoform X4
- UniProtKB:	A6IXJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133418 ⟸ XM_063277348
- Peptide Label:	isoform X3
- UniProtKB:	A6IXJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133423 ⟸ XM_063277353
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6A3Y2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133422 ⟸ XM_063277352
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6ABY0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133416 ⟸ XM_063277346
- Peptide Label:	isoform X1
- UniProtKB:	A6IXJ1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102412 ⟸ ENSRNOT00000144527

Ensembl Acc Id:

ENSRNOP00000109812 ⟸ ENSRNOT00000148870

Protein Domains

HP LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8U2-F1-model_v2	AlphaFold	F1M8U2	1-682	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700826

Promoter ID:

EPDNEW_R11346

Type:

initiation region

Name:

Ablim3_1

Description:

actin binding LIM protein family, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	57,245,699 - 57,245,759	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565118	AgrOrtholog
BioCyc Gene	G2FUF-7300	BioCyc
Ensembl Genes	ENSRNOG00000019365	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026227	ENTREZGENE
	ENSRNOT00000026227.8	UniProtKB/TrEMBL
	ENSRNOT00000080365	ENTREZGENE
	ENSRNOT00000080365.3	UniProtKB/TrEMBL
	ENSRNOT00000100056.2	UniProtKB/TrEMBL
	ENSRNOT00000101487.2	UniProtKB/TrEMBL
	ENSRNOT00000107734	ENTREZGENE
	ENSRNOT00000107734.2	UniProtKB/TrEMBL
	ENSRNOT00000144527.1	UniProtKB/TrEMBL
	ENSRNOT00000148870.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.950.10	UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	AbLIM_anchor	UniProtKB/TrEMBL
	Actin-binding_LIM	UniProtKB/TrEMBL
	Villin_headpiece	UniProtKB/TrEMBL
	Villin_headpiece_dom_sf	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
KEGG Report	rno:307395	UniProtKB/TrEMBL
NCBI Gene	307395	ENTREZGENE
PANTHER	ACTIN-BINDING LIM PROTEIN	UniProtKB/TrEMBL
	PTHR24213:SF0	UniProtKB/TrEMBL
Pfam	AbLIM_anchor	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
	VHP	UniProtKB/TrEMBL
PhenoGen	Ablim3	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
	PS51089	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019365	RatGTEx
SMART	LIM	UniProtKB/TrEMBL
	VHP	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	VHP	UniProtKB/TrEMBL
UniProt	A0A0G2K875	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3Y2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ABY0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AVJ1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LG63_RAT	UniProtKB/TrEMBL
	A0ABK0M3S5_RAT	UniProtKB/TrEMBL
	A6IXJ1	ENTREZGENE, UniProtKB/TrEMBL
	F1M8U2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-11-01	Ablim3	actin-binding LIM protein 3	Ablim3	actin-binding LIM protein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Ablim3	actin binding LIM protein family, member 3	RGD1565118_predicted	similar to mKIAA0843 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565118_predicted	similar to mKIAA0843 protein (predicted)	LOC307395	similar to mKIAA0843 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC307395	similar to mKIAA0843 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD