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Gene: Arhgef10 (Rho guanine nucleotide exchange factor 10) Rattus norvegicus

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Symbol:

Arhgef10

Name:

Rho guanine nucleotide exchange factor 10

RGD ID:

1565043

Description:

Predicted to enable guanyl-nucleotide exchange factor activity and kinesin binding activity. Predicted to be involved in several processes, including cytoskeleton organization; positive regulation of Rho protein signal transduction; and positive regulation of stress fiber assembly. Predicted to be active in centrosome and cytoplasm. Human ortholog(s) of this gene implicated in alcohol-related birth defects. Orthologous to human ARHGEF10 (Rho guanine nucleotide exchange factor 10); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 6-propyl-2-thiouracil; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC306618; RGD1565043; Rho guanine nucleotide exchange factor (GEF) 10; similar to Rho guanine nucleotide exchange factor (GEF) 10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	81,349,429 - 81,440,439 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	81,349,429 - 81,440,054 (-)	Ensembl				GRCr8
mRatBN7.2	16	74,647,147 - 74,738,784 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	74,647,153 - 74,738,173 (-)	Ensembl				mRatBN7.2
Rnor_6.0	16	79,725,629 - 79,817,065 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	79,725,643 - 79,793,619 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	79,302,340 - 79,392,426 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	79,458,304 - 79,547,225 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	72,465,044 - 72,554,359 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alcohol-related birth defects (ISO)

autism spectrum disorder (ISS)

Charcot-Marie-Tooth disease (ISO)

myopathy (ISO)

Slowed Nerve Conduction Velocity, Autosomal Dominant (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chloroacetaldehyde (ISO)

chlorpromazine (EXP)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

cobalt dichloride (ISO)

Cuprizon (EXP)

cyclosporin A (EXP,ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenofibrate (EXP)

fulvestrant (ISO)

glyphosate (ISO)

ifosfamide (ISO)

ivermectin (ISO)

manganese(II) chloride (EXP)

metformin (EXP)

methamphetamine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

N-methyl-4-phenylpyridinium (EXP)

orphenadrine (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

potassium dichromate (ISO)

S-nitrosoglutathione (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tert-butyl hydroperoxide (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

toluene (ISO)

tremolite asbestos (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA)

centrosome duplication (IEA,ISO)

mitotic spindle assembly (IBA,IEA,ISO)

myelination in peripheral nervous system (IEA,ISO)

positive regulation of Rho protein signal transduction (IEA,ISO)

positive regulation of stress fiber assembly (IBA,IEA,ISO)

regulation of small GTPase mediated signal transduction (IEA)

Cellular Component

centrosome (IBA,IEA,ISO)

cytoplasm (IBA,IEA)

Molecular Function

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO)

kinesin binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Haaland ØA, etal., F1000Res. 2019 Jun 24;8:960. doi: 10.12688/f1000research.19571.2. eCollection 2019.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14508709	PMID:16896804	PMID:19635168	PMID:20042462

Genomics

Comparative Map Data

Arhgef10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	81,349,429 - 81,440,439 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	81,349,429 - 81,440,054 (-)	Ensembl				GRCr8
mRatBN7.2	16	74,647,147 - 74,738,784 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	74,647,153 - 74,738,173 (-)	Ensembl				mRatBN7.2
Rnor_6.0	16	79,725,629 - 79,817,065 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	79,725,643 - 79,793,619 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	79,302,340 - 79,392,426 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	79,458,304 - 79,547,225 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	72,465,044 - 72,554,359 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

ARHGEF10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	1,823,329 - 1,958,641 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	1,823,332 - 1,958,642 (+)	Ensembl			hg38	GRCh38
GRCh37	8	1,772,092 - 1,906,807 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	1,759,556 - 1,894,214 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	1,808,165 - 1,894,206	NCBI
Celera	8	1,715,545 - 1,849,273 (+)	NCBI		Celera
Cytogenetic Map	8	p23.3	NCBI
HuRef	8	1,586,197 - 1,723,095 (+)	NCBI		HuRef
CHM1_1	8	1,772,111 - 1,906,332 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	1,601,829 - 1,736,745 (+)	NCBI		T2T-CHM13v2.0

Arhgef10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	14,956,405 - 15,051,085 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	14,961,663 - 15,051,085 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	14,906,412 - 15,001,085 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	14,911,663 - 15,001,085 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	14,911,717 - 15,001,085 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	14,928,877 - 15,000,415 (+)	NCBI		MGSCv36	mm8
Celera	8	15,075,995 - 15,165,401 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	7.59	NCBI

Arhgef10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	57,818,837 - 57,907,324 (-)	Ensembl
ChiLan1.0	NW_004955403	57,820,003 - 57,907,324 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGEF10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	16,542,465 - 16,702,258 (+)	NCBI		NHGRI_mPanPan1-v2
Mhudiblu_PPA_v0	8	5,381,357 - 5,541,094 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	1,747,801 - 1,862,917 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	1,724,413 - 1,862,917 (+)	Ensembl			panPan2	panpan1.1

ARHGEF10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	54,293,534 - 54,378,706 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	54,293,435 - 54,347,555 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	49,689,515 - 49,778,687 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	61,881,132 - 61,970,321 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	61,849,914 - 61,970,299 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	54,329,445 - 54,418,473 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	59,789,595 - 59,878,802 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	60,173,735 - 60,263,094 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arhgef10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	1,011,978 - 1,103,474 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936615	1,048,536 - 1,102,242 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936615	1,012,009 - 1,103,468 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGEF10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	33,370,126 - 33,446,598 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	33,370,093 - 33,465,852 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	37,931,757 - 37,986,440 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGEF10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	1,487,076 - 1,620,387 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	1,502,226 - 1,620,389 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	43,381,468 - 43,516,813 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgef10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624861	1,006,948 - 1,082,106 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624861	992,824 - 1,083,048 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arhgef10
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	68,824,679 - 68,914,462 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arhgef10
656 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	125
Count of miRNA genes:	71
Interacting mature miRNAs:	76
Transcripts:	ENSRNOT00000016745, ENSRNOT00000073971
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	59428714	91442908	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	59428714	91442908	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	59428714	91442908	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat
1298527	Arunc2	Aerobic running capacity QTL 2	2.9		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	75235285	81732231	Rat

Markers in Region

RH131116

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	74,647,280 - 74,647,465 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	79,725,761 - 79,725,945	NCBI	Rnor6.0
Rnor_5.0	16	79,302,472 - 79,302,656	UniSTS	Rnor5.0
RGSC_v3.4	16	79,457,269 - 79,457,453	UniSTS	RGSC3.4
Celera	16	72,465,176 - 72,465,360	UniSTS
RH 3.4 Map	16	727.9	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

RH136741

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	74,661,281 - 74,661,404 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	79,739,746 - 79,739,868	NCBI	Rnor6.0
Rnor_5.0	16	79,316,021 - 79,316,143	UniSTS	Rnor5.0
RGSC_v3.4	16	79,473,578 - 79,473,700	UniSTS	RGSC3.4
Celera	16	72,477,491 - 72,477,613	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

AW533825

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	74,695,685 - 74,695,843 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	79,774,144 - 79,774,301	NCBI	Rnor6.0
Rnor_5.0	16	79,350,419 - 79,350,576	UniSTS	Rnor5.0
Celera	16	72,511,895 - 72,512,052	UniSTS
RH 3.4 Map	16	728.8	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

ha2626

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	105,278,041 - 105,279,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	112,477,086 - 112,478,466	NCBI	Rnor6.0
Rnor_5.0	13	117,027,835 - 117,029,215	UniSTS	Rnor5.0
RGSC_v3.4	13	109,613,020 - 109,614,400	UniSTS	RGSC3.4
Celera	16	72,530,738 - 72,530,895	UniSTS
Celera	13	104,704,330 - 104,705,710	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	80	59	6	344	180	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000073971 ⟹ ENSRNOP00000064046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,349,429 - 81,440,054 (-)	Ensembl
mRatBN7.2 Ensembl	16	74,647,153 - 74,738,173 (-)	Ensembl
Rnor_6.0 Ensembl	16	79,725,643 - 79,793,619 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119970 ⟹ ENSRNOP00000085722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	81,349,429 - 81,440,054 (-)	Ensembl
mRatBN7.2 Ensembl	16	74,647,153 - 74,738,173 (-)	Ensembl

RefSeq Acc Id:

NM_001427033 ⟹ NP_001413962

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,349,429 - 81,440,054 (-)	NCBI

RefSeq Acc Id:

XM_006253400 ⟹ XP_006253462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,349,431 - 81,440,439 (-)	NCBI
mRatBN7.2	16	74,648,316 - 74,738,784 (-)	NCBI
Rnor_6.0	16	79,725,629 - 79,817,065 (-)	NCBI
Rnor_5.0	16	79,302,340 - 79,392,426 (-)	NCBI

Sequence:

show sequence

CAGTGGATGCTGGAGTCATGATGGGTGTGGTATCCTTTCTGTGCCCCACTGCCCCGGGGCCCAA
AATGGGAGAGGTGGGGAGTGGGGGGAAGGGTCGGAGATGGAGTGAAGTGTCGTCTAGCGCCCCC
TTCCCGCAGGAGCCTATACCGGGATCTACAGGGAGCAAGCAGTCGCCGGGGTCACGCTGGGTGG
AGTGCCTGTCTTGTGTTCCCCGCCCGGGGCAGCGCAACTCCCAGTGTCTCACAGAGGGTGGATG
ATCGGGAGGCGCACTCTGGCCCCGCGCCATTCCCCAGTGACCAGGAGTCTGAGGGGAGAAGAGC
CCACTCTGGGGCACTGCAAGCTGGTGTCCTTCCTGCGACCTTTCTGTTCCCGGGGGGCGCAAGG
TTGCCTCTAGAAAGCCCCGACTGGCGTCTCCTGGGAAGGTTTCATATGCCAACTTGAGGGACAA
TGTCTGTGCCTGCAGGGGCCCCTGTCCCCTGATGCTGTCCACGTGTGGAGGAAGGAGGCAAGGC
TGAGCATGGACCAGGGAGAGGCCTCACCACCTGTGCCTGCAGAACACGAGGTGAAATGTGACAC
CAGCAACAATGAGGAGGAGGGAGAGCTGTTTGACTTTGAGAGTGGAGATGAAGTCCCGGAAGCC
GACCGACAGGCCCCGACTGCCGATGACGGGACGGGAGTTGCTGAAGCAGACGGTGCAGATGAGA
ACACGTCCCCTGACGGGACGGGAGTTGCTGAAGCAGACGGTGCAGATGAGAACACGTCCCCTGA
TGGGACGAGAGTTGATGAAGCAGACGGTGCAGATGAGAACACGTCCCCTGCAGGAAACGGAACT
GGAGCGGAATCTGTCCCTGAGGCAGAGCCTGAGAAACTTGTGGTCCCAATAAAAGTGAACCCAT
ATTCTGTCATTGACATCACGCCGTTCCAGGAGGACCAGCCGCCATCTCCAGATGCAAACCCAGA
GGAGGAAGGGGTGGGCCTGCGCGTGCCCAGTGGTTACTGTGTGCCTGTGCCCTGTGGCTACGCT
GTCCCATCTAACCTGCCGTTGCTGCTGCCCACCTACTCCAGCCAAATCATCATCCGAGCCCAGT
CTGTAGAGGAGGAAGTTGCAGCAGAAGTTGCGGGAGACGGGCAGTGCAATTCCCTAAGTTCTGA
GGACCTACCACACAGCGGTGATCAAGGCAGCCAAGAAGGCAGTGCCCTGGCCCGATGGGCAGCC
GACCCTGCCAACACAGCCTGGATGGAAAATCCAGAGGAAGCAATTTACGATGATGTTCCAAGGG
AAAACTCAGACTCTGAACCAGATGAAATGATTTACGATGACGTGGAGAACGGAGGCGAGGGTGG
AAACAGCTCCCTGGAGTACGGGTGGAGCTCCAGCGAGTTTGAAAGCTACGAGGAGCCAAGCGAC
TCGGAGGGCAAGAACGGGATTCCCAGGTCCTTCCTACGCAGCAACCATAAAAAGCAACTCTCTC
ATGACCTAACCCGCTTTAAGGCGCACTGTGAGGAAAAGATGAGAGGTTTGGTGGCCAGTACGGT
GGGAGCCATGGAGGCACAGCAGAGGCAGGAGTGGAAGATGCAGAGACTTATGAAGGCAGCCAAG
GAGGGCACCAGAGATGGTTTGGAGAAGACCAAGGCTGCCGTGAAGAGAGGCCGCTCCTTCATCA
GGACCAAGTCCTTGGTCTCTCAAGATCACAGGTATTATTTTGAAGAAGAGCAGAATTTGTTCAT
TGATGTTGACTGCAAGCACCCGGAGGCTGTCCTCACTCCAATGCCCGAGGGTCTGTCTCAGCAG
CAGGTTGTGAGGAGATACATTCTGGGCTCCATTGTTGAGAGTGAGAAGAACTACGTAGATGCTC
TCCGGCGGATTTTGGAGCAATATGAGAAGCCACTGTCCGAGATGGAGCCCCGGCTCCTGAGTGA
CAGGAAGCTCAGGATGGTATTTTACCGCATCAAAGAGATCCTGCAGTGTCATTCCATGTTCCAG
ATCGCACTGGCCAGCCGGGTGTCTGAGTGGGATGCCGTGGAAACAATCGGAGATGTTTTCGTGG
CCTCGTTCTCCAAGTCCATGGTGCTGGATGCTTACAGCGAGTATGTGAACAACTTCAGCACGGC
CGTGGCTGTCCTCAAGAAGACGTGTGCCACAAAGCCTGCCTTCCTTGAGTTCTTAAAGCTGAGC
CAGGATTCCAGTCCAGACCGAGTCACACTCCACAGCCTTATGATGCGGCCCATCCAGCGGTTCC
CACAGTTCATCCTCCTGCTGCAGGACATGCTGAAGAACACAGCCAAAGGACACCCTGACAGGCT
GCCCCTTCAGATGGCGCTGACGGAGCTCGAGACCCTGGCGGAGAAGCTAAACGAGAGAAAGAGA
GATGCTGACCAGCGGTGTGAAATCAAGCAAATAGCAAAAGCCATAAACGAAAGATACCTGAACA
AGCTCCTCAGCAGTGGGAACCGGTACCTCGTTCGCTCCGATGACGTCATTGAGACGGTTTACAA
CGACCGGGGAGAAATCGTCAAGACCAAGCAGCGCCGGATCTTTATGCTGAATGACGTGCTGATG
TGTGCTACCGCCAGCTCACGGAACTCACATGAAAGCCATGCCATGATGAACCAGAGGTACCTGC
TCAAGTGGAGCGTCCCTCTAGGACAGGTGGACGTGATCGAGTACAGCGGCAGTTCTGGCACGGG
GGATCACAGCCGGCACCACACTGCACACTCACCGGAGAGCCTGGCCGTGGTGGCCAATGTGAAG
CCGCACAAAGTTTACATGGGGCCAGGGCAGCTGTACCAGGATCTGCAGAACCTACTGCACGACC
TGAATGTTGTCGGCCAGATCTCGCAGCTGATAGGAAACCTCCGGGGGAGCTATCAGAACTTAAA
CCAGTCAGTAGCCCACGACTGGACGTCTGGCTTACAGCAGCTGATCCTGAGGAAAGAAGATGCG
ATCAGAGCCGCCGACCGCTGCAGGATTCAGTTACAGCTCCCGGGAAAGCAGGACAAGTCAGGGC
GGCCCACATTCTTCACCGCTGTGTTCAATACGTTTACCCCCGCCATCAAGGAGTCCTGGGTCAG
CAGCCTGCAGATGGCCAAGCTGGCCCTTGAGGAGGAAAACCATATGGGATGGTTCTGTGTGGAT
GACGATGGCAGCCTCGCCAAGAAAGAGACACACCCTCTCCTGGTGGGACACACGTCTGTGATGG
TGGCCAAGCAGCCAGAGTTCAAGATCGAATGTGCAGCTTATAACCCCGAGCCTTACCCAAGCAA
CGATAACCAACCAGCGTCACCCTCCACGGCGCGTGGCTTCCTGTGGATCGGAAGCTGCAGCAAT
CAGATGGGTCAGGTCGCCATTGTCTCCTTCCAAAGTGCCAACCCCAAAGTCATCGAGTGCTTCA
ATGTGGAGTCACGCATCCTGTGTATGATTTACATCCCGGCGGAGGAGTCAAAGCCCCAAGAGCC
CGCTGACACCAAGGACCCAGAGGCCACAGCGTCGAGAGCACCCCACGTGCCCACCATCTGCCTG
GGCACAGAGGAGGGAAGCATTTCCATTTACAAAAGCAGTCAGGGCTGCAAGAAGGTGAGGCTCC
AGCACTTCTACACGCCTGACAAGTCCACAGTCATGAGCTTGGCCTGCTCCCCGCACGGCCTGTA
TGCAGGCCTGGTCAATGGGTCTGTAGCCAGCTACACCAAGGCTCCAGATGGATCCTGGAACTCG
GAACCCCAGCAAGTGATCAAGTTGGGTGTCCTGCCAGTCAGAAGCCTTCTCCTGGTGGAGGGCG
CGCTGTGGGCAGCCTCGGGAGGGCAGGTGTTCATGGCCAGCGTGGAGACTCACACCGTAGAGAA
TCAGCTGGAGGCCCACCAAGACGAGGGGATGGTCATCTCCCACATGGCTGTGGCTGGGGTCGGC
ATTTGGATTGCCTTCACCTCGGGGTCCACGCTTCGCCTCTTCCACACAGAGACCTTGAAGCACC
TGCAGGATGTCAACATCGACGCCCCCGTGCATAGCATGTTGCCAGGGCACCAGCGTCTGTCTGT
GACCAGCCTGCTCGTCTGCCATGGCCTGCTCATGGTTGGTACCAGCCTGGGTGTTGTAGTGGCC
CTGCCAGTCCCTCGGCTTCAGGGTATCCCCAAAGTGACAGGGCGAGGCATGGTCTCCTACCATG
CGCATAATGGGCCCGTTAAGTTCATTGTCACAGCCACAGCGTTTCAGAACAAGGACAGAGCCCG
GGACAGACCACGTTCCAGTTCTGAGCTTCAGGACGAAGACCCCAAGGACTTGCTCTGCGGTGAG
GAGGGCACTTCTTGCCTGGGCCAGACTGACACCAGCACAGCGGTTTGGTTGGGAGACTCCCTAG
GATTGACAGCTCAGAACGACCTGTCTTCATCGTCGGGGTCACTGTCCCATGGCTCCAGCTCCCT
AGAGCACAGATCTGTGGACAGCAGCCTGTGTGACCTCCTGAGGGACCCCAGTGCCTTTCCAAGG
AGCAGGGCACAGAGCTCTAGGAGAGCCAGAGCCAGTTCAGCGCTGGTGGTATGTGGGGGCCAGG
GCCACCGGCGGGTGCACAGGAAGGCCAGGCAGCCTTCTCAGGAGGACCTGGTTTCTTCGGTGAT
GGTGTGGCAGATTCCACTGCTGGGCATGTAGGTCAGAGGTCAGAGGCAGCTGCCTGGCATCAGG
TGGCGAGCAAGGACAACTCTCAGCTGGATGCAGACCGACTGACAGGCAGCATCCATACTCACTG
GGACCAACTGGAAAGGAAGTGTGCAGCGGTCACACAGCTCCCGTGCCTCGTGTGCTGGGGACGC
AGAGCAGCATTCTGGCTCTTGGGTCCCTGAGCAACGTTCCAGGATAATGTTACAGTCCGCCCCG
TCATTCACCTGAGACGCCAAGTGAGCCGTCTGTGTGAGTTCCAGTCACATCTCAGAGAACTGAC
GGGGAACTGTAGCATCTACTAGCATAGGAGGCCGTTAACAATTCTTAAAATCATTCTACTTGAC
TCAACCTCGCTACCATTATTTATATTCTATATATTTTTAAAATTCCAGAGTACAGATTGTAACA
ATTTGGAAAGCCAGGTAACACACCCAAGTCCAGTCAGCTTGGTATTTTGTGGGGGAGCAACTGA
GGCTTTCCAAAGTAGACTTTTATGTGTACTGTCCCCTCTAACAAATACTCTTTTTATATTGCAT
TTTTTTCTATTAAAAATCAACAGCTAACATTTAGTCAATGTCCTATCTGTAGCGTTTCACGTGT
AATCTTTAAGCCAAAATGTTCAGTACCTATCAAGTTTTGAGGTCCAGCTTCCACACTGTACTTG
CCCTATCTGCGTGGGACAGGTGCTGGCCCAGTCGTGCAGGGATGGTGCTAGTCGAGTCTTGGGT
CTTCTGGGCACCTGCTGTCAGGGAGCCATCGCAGTTGGACACTCCTTCTGAGTGGTTCGTGGTG
CTGATCAGTCAGCCGCTACCCCCACTGCCTGCTGTCCCAGTGCCACCCCCCTTCCCAAAGAATG
CACAGGGTCATGTGGGACACTTGAGAAGCAGCCGCGGATGTCAAGGGGTATGAGTAGCCCATAG
ACTCCCTTTGCTCCACCTGTATTTATACATCAGCGTCTCACTGGATGGTTAAAAAAAAATTTTT
TTTAAACCTAATGCAGATATTCACCAGGAACAACTTCTCAGCACTTTACAAAGGACTAAAATGC
TAACTTTTTACCTTAGCCAAATACTGTCTAAATTGCACATATACCCAGCCTTTCTTAAACTGTT
AGCTGCTATCTCGTTTGATAAAAATAAAAGACTTTATTTTAGAATA

hide sequence

RefSeq Acc Id:

XM_006253403 ⟹ XP_006253465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,349,431 - 81,440,097 (-)	NCBI
mRatBN7.2	16	74,648,316 - 74,737,818 (-)	NCBI
Rnor_6.0	16	79,725,629 - 79,816,477 (-)	NCBI
Rnor_5.0	16	79,302,340 - 79,392,426 (-)	NCBI

Sequence:

show sequence

GGCGGGGTGGGAGCGCATCGCGGGCGGGGCGCGCGGGGGGCGCGGGACAACTGGCGGACGCAGA
CGGCGGATGGCGCCCGGCCCCTCGGTTGCCTCTAGAAAGCCCCGACTGGCGTCTCCTGGGAAGG
TTTCATATGCCAACTTGAGGGACAATGTCTGTGCCTGCAGGGGCCCCTGTCCCCTGATGCTGTC
CACGTGTGGAGGAAGGAGGCAAGGCTGAGCATGGACCAGGGAGAGGCCTCACCACCTGTGCCTG
CAGAACACGAGGTGAAATGTGACACCAGCAACAATGAGGAGGAGGGAGAGCTGTTTGACTTTGA
GAGTGGAGATGAAGTCCCGGAAGCCGACCGACAGGCCCCGACTGCCGATGACGGGACGGGAGTT
GCTGAAGCAGACGGTGCAGATGAGAACACGTCCCCTGACGGGACGGGAGTTGCTGAAGCAGACG
GTGCAGATGAGAACACGTCCCCTGATGGGACGAGAGTTGATGAAGCAGACGGTGCAGATGAGAA
CACGTCCCCTGCAGGAAACGGAACTGGAGCGGAATCTGTCCCTGAGGCAGAGCCTGAGAAACTT
GTGGTCCCAATAAAAGTGAACCCATATTCTGTCATTGACATCACGCCGTTCCAGGAGGACCAGC
CGCCATCTCCAGATGCAAACCCAGAGGAGGAAGGGGTGGGCCTGCGCGTGCCCAGTGGTTACTG
TGTGCCTGTGCCCTGTGGCTACGCTGTCCCATCTAACCTGCCGTTGCTGCTGCCCACCTACTCC
AGCCAAATCATCATCCGAGCCCAGTCTGTAGAGGAGGAAGTTGCAGCAGAAGTTGCGGGAGACG
GGCAGTGCAATTCCCTAAGTTCTGAGGACCTACCACACAGCGGTGATCAAGGCAGCCAAGAAGG
CAGTGCCCTGGCCCGATGGGCAGCCGACCCTGCCAACACAGCCTGGATGGAAAATCCAGAGGAA
GCAATTTACGATGATGTTCCAAGGGAAAACTCAGACTCTGAACCAGATGAAATGATTTACGATG
ACGTGGAGAACGGAGGCGAGGGTGGAAACAGCTCCCTGGAGTACGGGTGGAGCTCCAGCGAGTT
TGAAAGCTACGAGGAGCCAAGCGACTCGGAGGGCAAGAACGGGATTCCCAGGTCCTTCCTACGC
AGCAACCATAAAAAGCAAATGCAGAGACTTATGAAGGCAGCCAAGGAGGGCACCAGAGATGGTT
TGGAGAAGACCAAGGCTGCCGTGAAGAGAGGCCGCTCCTTCATCAGGACCAAGTCCTTGGTCTC
TCAAGATCACAGGTATTATTTTGAAGAAGAGCAGAATTTGTTCATTGATGTTGACTGCAAGCAC
CCGGAGGCTGTCCTCACTCCAATGCCCGAGGGTCTGTCTCAGCAGCAGGTTGTGAGGAGATACA
TTCTGGGCTCCATTGTTGAGAGTGAGAAGAACTACGTAGATGCTCTCCGGCGGATTTTGGAGCA
ATATGAGAAGCCACTGTCCGAGATGGAGCCCCGGCTCCTGAGTGACAGGAAGCTCAGGATGGTA
TTTTACCGCATCAAAGAGATCCTGCAGTGTCATTCCATGTTCCAGATCGCACTGGCCAGCCGGG
TGTCTGAGTGGGATGCCGTGGAAACAATCGGAGATGTTTTCGTGGCCTCGTTCTCCAAGTCCAT
GGTGCTGGATGCTTACAGCGAGTATGTGAACAACTTCAGCACGGCCGTGGCTGTCCTCAAGAAG
ACGTGTGCCACAAAGCCTGCCTTCCTTGAGTTCTTAAAGCTGAGCCAGGATTCCAGTCCAGACC
GAGTCACACTCCACAGCCTTATGATGCGGCCCATCCAGCGGTTCCCACAGTTCATCCTCCTGCT
GCAGGACATGCTGAAGAACACAGCCAAAGGACACCCTGACAGGCTGCCCCTTCAGATGGCGCTG
ACGGAGCTCGAGACCCTGGCGGAGAAGCTAAACGAGAGAAAGAGAGATGCTGACCAGCGGTGTG
AAATCAAGCAAATAGCAAAAGCCATAAACGAAAGATACCTGAACAAGCTCCTCAGCAGTGGGAA
CCGGTACCTCGTTCGCTCCGATGACGTCATTGAGACGGTTTACAACGACCGGGGAGAAATCGTC
AAGACCAAGCAGCGCCGGATCTTTATGCTGAATGACGTGCTGATGTGTGCTACCGCCAGCTCAC
GGAACTCACATGAAAGCCATGCCATGATGAACCAGAGGTACCTGCTCAAGTGGAGCGTCCCTCT
AGGACAGGTGGACGTGATCGAGTACAGCGGCAGTTCTGGCACGGGGGATCACAGCCGGCACCAC
ACTGCACACTCACCGGAGAGCCTGGCCGTGGTGGCCAATGTGAAGCCGCACAAAGTTTACATGG
GGCCAGGGCAGCTGTACCAGGATCTGCAGAACCTACTGCACGACCTGAATGTTGTCGGCCAGAT
CTCGCAGCTGATAGGAAACCTCCGGGGGAGCTATCAGAACTTAAACCAGTCAGTAGCCCACGAC
TGGACGTCTGGCTTACAGCAGCTGATCCTGAGGAAAGAAGATGCGATCAGAGCCGCCGACCGCT
GCAGGATTCAGTTACAGCTCCCGGGAAAGCAGGACAAGTCAGGGCGGCCCACATTCTTCACCGC
TGTGTTCAATACGTTTACCCCCGCCATCAAGGAGTCCTGGGTCAGCAGCCTGCAGATGGCCAAG
CTGGCCCTTGAGGAGGAAAACCATATGGGATGGTTCTGTGTGGATGACGATGGCAGCCTCGCCA
AGAAAGAGACACACCCTCTCCTGGTGGGACACACGTCTGTGATGGTGGCCAAGCAGCCAGAGTT
CAAGATCGAATGTGCAGCTTATAACCCCGAGCCTTACCCAAGCAACGATAACCAACCAGCGTCA
CCCTCCACGGCGCGTGGCTTCCTGTGGATCGGAAGCTGCAGCAATCAGATGGGTCAGGTCGCCA
TTGTCTCCTTCCAAAGTGCCAACCCCAAAGTCATCGAGTGCTTCAATGTGGAGTCACGCATCCT
GTGTATGATTTACATCCCGGCGGAGGAGTCAAAGCCCCAAGAGCCCGCTGACACCAAGGACCCA
GAGGCCACAGCGTCGAGAGCACCCCACGTGCCCACCATCTGCCTGGGCACAGAGGAGGGAAGCA
TTTCCATTTACAAAAGCAGTCAGGGCTGCAAGAAGGTGAGGCTCCAGCACTTCTACACGCCTGA
CAAGTCCACAGTCATGAGCTTGGCCTGCTCCCCGCACGGCCTGTATGCAGGCCTGGTCAATGGG
TCTGTAGCCAGCTACACCAAGGCTCCAGATGGATCCTGGAACTCGGAACCCCAGCAAGTGATCA
AGTTGGGTGTCCTGCCAGTCAGAAGCCTTCTCCTGGTGGAGGGCGCGCTGTGGGCAGCCTCGGG
AGGGCAGGTGTTCATGGCCAGCGTGGAGACTCACACCGTAGAGAATCAGCTGGAGGCCCACCAA
GACGAGGGGATGGTCATCTCCCACATGGCTGTGGCTGGGGTCGGCATTTGGATTGCCTTCACCT
CGGGGTCCACGCTTCGCCTCTTCCACACAGAGACCTTGAAGCACCTGCAGGATGTCAACATCGA
CGCCCCCGTGCATAGCATGTTGCCAGGGCACCAGCGTCTGTCTGTGACCAGCCTGCTCGTCTGC
CATGGCCTGCTCATGGTTGGTACCAGCCTGGGTGTTGTAGTGGCCCTGCCAGTCCCTCGGCTTC
AGGGTATCCCCAAAGTGACAGGGCGAGGCATGGTCTCCTACCATGCGCATAATGGGCCCGTTAA
GTTCATTGTCACAGCCACAGCGTTTCAGAACAAGGACAGAGCCCGGGACAGACCACGTTCCAGT
TCTGAGCTTCAGGACGAAGACCCCAAGGACTTGCTCTGCGGTGAGGAGGGCACTTCTTGCCTGG
GCCAGACTGACACCAGCACAGCGGTTTGGTTGGGAGACTCCCTAGGATTGACAGCTCAGAACGA
CCTGTCTTCATCGTCGGGGTCACTGTCCCATGGCTCCAGCTCCCTAGAGCACAGATCTGTGGAC
AGCAGCCTGTGTGACCTCCTGAGGGACCCCAGTGCCTTTCCAAGGAGCAGGGCACAGAGCTCTA
GGAGAGCCAGAGCCAGTTCAGCGCTGGTGGTATGTGGGGGCCAGGGCCACCGGCGGGTGCACAG
GAAGGCCAGGCAGCCTTCTCAGGAGGACCTGGTTTCTTCGGTGATGGTGTGGCAGATTCCACTG
CTGGGCATGTAGGTCAGAGGTCAGAGGCAGCTGCCTGGCATCAGGTGGCGAGCAAGGACAACTC
TCAGCTGGATGCAGACCGACTGACAGGCAGCATCCATACTCACTGGGACCAACTGGAAAGGAAG
TGTGCAGCGGTCACACAGCTCCCGTGCCTCGTGTGCTGGGGACGCAGAGCAGCATTCTGGCTCT
TGGGTCCCTGAGCAACGTTCCAGGATAATGTTACAGTCCGCCCCGTCATTCACCTGAGACGCCA
AGTGAGCCGTCTGTGTGAGTTCCAGTCACATCTCAGAGAACTGACGGGGAACTGTAGCATCTAC
TAGCATAGGAGGCCGTTAACAATTCTTAAAATCATTCTACTTGACTCAACCTCGCTACCATTAT
TTATATTCTATATATTTTTAAAATTCCAGAGTACAGATTGTAACAATTTGGAAAGCCAGGTAAC
ACACCCAAGTCCAGTCAGCTTGGTATTTTGTGGGGGAGCAACTGAGGCTTTCCAAAGTAGACTT
TTATGTGTACTGTCCCCTCTAACAAATACTCTTTTTATATTGCATTTTTTTCTATTAAAAATCA
ACAGCTAACATTTAGTCAATGTCCTATCTGTAGCGTTTCACGTGTAATCTTTAAGCCAAAATGT
TCAGTACCTATCAAGTTTTGAGGTCCAGCTTCCACACTGTACTTGCCCTATCTGCGTGGGACAG
GTGCTGGCCCAGTCGTGCAGGGATGGTGCTAGTCGAGTCTTGGGTCTTCTGGGCACCTGCTGTC
AGGGAGCCATCGCAGTTGGACACTCCTTCTGAGTGGTTCGTGGTGCTGATCAGTCAGCCGCTAC
CCCCACTGCCTGCTGTCCCAGTGCCACCCCCCTTCCCAAAGAATGCACAGGGTCATGTGGGACA
CTTGAGAAGCAGCCGCGGATGTCAAGGGGTATGAGTAGCCCATAGACTCCCTTTGCTCCACCTG
TATTTATACATCAGCGTCTCACTGGATGGTTAAAAAAAAATTTTTTTTAAACCTAATGCAGATA
TTCACCAGGAACAACTTCTCAGCACTTTACAAAGGACTAAAATGCTAACTTTTTACCTTAGCCA
AATACTGTCTAAATTGCACATATACCCAGCCTTTCTTAAACTGTTAGCTGCTATCTCGTTTGAT
AAAAATAAAAGACTTTATTTTAGAATA

hide sequence

RefSeq Acc Id:

XM_063275478 ⟹ XP_063131548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	81,349,431 - 81,440,439 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001413962	(Get FASTA)	NCBI Sequence Viewer
	XP_006253462	(Get FASTA)	NCBI Sequence Viewer
	XP_006253465	(Get FASTA)	NCBI Sequence Viewer
	XP_063131548	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM08936	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064046
	ENSRNOP00000064046.3
	ENSRNOP00000085722
	ENSRNOP00000085722.1

RefSeq Acc Id:	XP_006253462 ⟸ XM_006253400
- Peptide Label:	isoform X1
- UniProtKB:	M0R3X3 (UniProtKB/TrEMBL), A6IWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQGEASPPVPAEHEVKCDTSNNEEEGELFDFESGDEVPEADRQAPTADDGTGVAEADGADENT SPDGTGVAEADGADENTSPDGTRVDEADGADENTSPAGNGTGAESVPEAEPEKLVVPIKVNPYS VIDITPFQEDQPPSPDANPEEEGVGLRVPSGYCVPVPCGYAVPSNLPLLLPTYSSQIIIRAQSV EEEVAAEVAGDGQCNSLSSEDLPHSGDQGSQEGSALARWAADPANTAWMENPEEAIYDDVPREN SDSEPDEMIYDDVENGGEGGNSSLEYGWSSSEFESYEEPSDSEGKNGIPRSFLRSNHKKQLSHD LTRFKAHCEEKMRGLVASTVGAMEAQQRQEWKMQRLMKAAKEGTRDGLEKTKAAVKRGRSFIRT KSLVSQDHRYYFEEEQNLFIDVDCKHPEAVLTPMPEGLSQQQVVRRYILGSIVESEKNYVDALR RILEQYEKPLSEMEPRLLSDRKLRMVFYRIKEILQCHSMFQIALASRVSEWDAVETIGDVFVAS FSKSMVLDAYSEYVNNFSTAVAVLKKTCATKPAFLEFLKLSQDSSPDRVTLHSLMMRPIQRFPQ FILLLQDMLKNTAKGHPDRLPLQMALTELETLAEKLNERKRDADQRCEIKQIAKAINERYLNKL LSSGNRYLVRSDDVIETVYNDRGEIVKTKQRRIFMLNDVLMCATASSRNSHESHAMMNQRYLLK WSVPLGQVDVIEYSGSSGTGDHSRHHTAHSPESLAVVANVKPHKVYMGPGQLYQDLQNLLHDLN VVGQISQLIGNLRGSYQNLNQSVAHDWTSGLQQLILRKEDAIRAADRCRIQLQLPGKQDKSGRP TFFTAVFNTFTPAIKESWVSSLQMAKLALEEENHMGWFCVDDDGSLAKKETHPLLVGHTSVMVA KQPEFKIECAAYNPEPYPSNDNQPASPSTARGFLWIGSCSNQMGQVAIVSFQSANPKVIECFNV ESRILCMIYIPAEESKPQEPADTKDPEATASRAPHVPTICLGTEEGSISIYKSSQGCKKVRLQH FYTPDKSTVMSLACSPHGLYAGLVNGSVASYTKAPDGSWNSEPQQVIKLGVLPVRSLLLVEGAL WAASGGQVFMASVETHTVENQLEAHQDEGMVISHMAVAGVGIWIAFTSGSTLRLFHTETLKHLQ DVNIDAPVHSMLPGHQRLSVTSLLVCHGLLMVGTSLGVVVALPVPRLQGIPKVTGRGMVSYHAH NGPVKFIVTATAFQNKDRARDRPRSSSELQDEDPKDLLCGEEGTSCLGQTDTSTAVWLGDSLGL TAQNDLSSSSGSLSHGSSSLEHRSVDSSLCDLLRDPSAFPRSRAQSSRRARASSALVVCGGQGH RRVHRKARQPSQEDLVSSVMVWQIPLLGM hide sequence

RefSeq Acc Id:	XP_006253465 ⟸ XM_006253403
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A0S7 (UniProtKB/TrEMBL), A6IWD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQGEASPPVPAEHEVKCDTSNNEEEGELFDFESGDEVPEADRQAPTADDGTGVAEADGADENT SPDGTGVAEADGADENTSPDGTRVDEADGADENTSPAGNGTGAESVPEAEPEKLVVPIKVNPYS VIDITPFQEDQPPSPDANPEEEGVGLRVPSGYCVPVPCGYAVPSNLPLLLPTYSSQIIIRAQSV EEEVAAEVAGDGQCNSLSSEDLPHSGDQGSQEGSALARWAADPANTAWMENPEEAIYDDVPREN SDSEPDEMIYDDVENGGEGGNSSLEYGWSSSEFESYEEPSDSEGKNGIPRSFLRSNHKKQMQRL MKAAKEGTRDGLEKTKAAVKRGRSFIRTKSLVSQDHRYYFEEEQNLFIDVDCKHPEAVLTPMPE GLSQQQVVRRYILGSIVESEKNYVDALRRILEQYEKPLSEMEPRLLSDRKLRMVFYRIKEILQC HSMFQIALASRVSEWDAVETIGDVFVASFSKSMVLDAYSEYVNNFSTAVAVLKKTCATKPAFLE FLKLSQDSSPDRVTLHSLMMRPIQRFPQFILLLQDMLKNTAKGHPDRLPLQMALTELETLAEKL NERKRDADQRCEIKQIAKAINERYLNKLLSSGNRYLVRSDDVIETVYNDRGEIVKTKQRRIFML NDVLMCATASSRNSHESHAMMNQRYLLKWSVPLGQVDVIEYSGSSGTGDHSRHHTAHSPESLAV VANVKPHKVYMGPGQLYQDLQNLLHDLNVVGQISQLIGNLRGSYQNLNQSVAHDWTSGLQQLIL RKEDAIRAADRCRIQLQLPGKQDKSGRPTFFTAVFNTFTPAIKESWVSSLQMAKLALEEENHMG WFCVDDDGSLAKKETHPLLVGHTSVMVAKQPEFKIECAAYNPEPYPSNDNQPASPSTARGFLWI GSCSNQMGQVAIVSFQSANPKVIECFNVESRILCMIYIPAEESKPQEPADTKDPEATASRAPHV PTICLGTEEGSISIYKSSQGCKKVRLQHFYTPDKSTVMSLACSPHGLYAGLVNGSVASYTKAPD GSWNSEPQQVIKLGVLPVRSLLLVEGALWAASGGQVFMASVETHTVENQLEAHQDEGMVISHMA VAGVGIWIAFTSGSTLRLFHTETLKHLQDVNIDAPVHSMLPGHQRLSVTSLLVCHGLLMVGTSL GVVVALPVPRLQGIPKVTGRGMVSYHAHNGPVKFIVTATAFQNKDRARDRPRSSSELQDEDPKD LLCGEEGTSCLGQTDTSTAVWLGDSLGLTAQNDLSSSSGSLSHGSSSLEHRSVDSSLCDLLRDP SAFPRSRAQSSRRARASSALVVCGGQGHRRVHRKARQPSQEDLVSSVMVWQIPLLGM hide sequence

Ensembl Acc Id:

ENSRNOP00000064046 ⟸ ENSRNOT00000073971

Ensembl Acc Id:

ENSRNOP00000085722 ⟸ ENSRNOT00000119970

RefSeq Acc Id:	NP_001413962 ⟸ NM_001427033
- UniProtKB:	M0R3X3 (UniProtKB/TrEMBL), A6IWD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131548 ⟸ XM_063275478
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A0S7 (UniProtKB/TrEMBL), A6IWD5 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R3X3-F1-model_v2	AlphaFold	M0R3X3	1-1133	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565043	AgrOrtholog
BioCyc Gene	G2FUF-10749	BioCyc
Ensembl Genes	ENSRNOG00000012561	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000073971	ENTREZGENE
	ENSRNOT00000073971.5	UniProtKB/TrEMBL
	ENSRNOT00000119970	ENTREZGENE
	ENSRNOT00000119970.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.900.10	UniProtKB/TrEMBL
InterPro	ARHGEF10/ARHGEF17	UniProtKB/TrEMBL
	DBL_dom_sf	UniProtKB/TrEMBL
	DH-domain	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	306618	ENTREZGENE
PANTHER	PTHR12877	UniProtKB/TrEMBL
	PTHR12877:SF14	UniProtKB/TrEMBL
Pfam	PH_19	UniProtKB/TrEMBL
	RhoGEF	UniProtKB/TrEMBL
	WD40_2	UniProtKB/TrEMBL
PhenoGen	Arhgef10	PhenoGen
PROSITE	DH_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012561	RatGTEx
SMART	RhoGEF	UniProtKB/TrEMBL
Superfamily-SCOP	DH-domain	UniProtKB/TrEMBL
	PH domain-like	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I6A0S7	ENTREZGENE, UniProtKB/TrEMBL
	A6IWD5	ENTREZGENE, UniProtKB/TrEMBL
	M0R3X3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-19	Arhgef10	Rho guanine nucleotide exchange factor 10	Arhgef10	Rho guanine nucleotide exchange factor (GEF) 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-11-25	Arhgef10	Rho guanine nucleotide exchange factor (GEF) 10	RGD1565043	similar to Rho guanine nucleotide exchange factor (GEF) 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1565043	similar to Rho guanine nucleotide exchange factor (GEF) 10	RGD1565043_predicted	similar to Rho guanine nucleotide exchange factor (GEF) 10 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565043_predicted	similar to Rho guanine nucleotide exchange factor (GEF) 10 (predicted)	LOC306618	similar to Rho guanine nucleotide exchange factor (GEF) 10	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC306618	similar to Rho guanine nucleotide exchange factor (GEF) 10			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM