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Gene: Zfp329 (zinc finger protein 329) Rattus norvegicus

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Symbol:

Zfp329

Name:

zinc finger protein 329

RGD ID:

1565029

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF329 (zinc finger protein 329); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; chloroprene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC308361; RGD1565029; similar to 4632409L22Rik protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF329 (zinc finger protein 329)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Zfp329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf329 (zinc finger protein 329)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF329 (zinc finger protein 329)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF329 (zinc finger protein 329)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp329 (zinc finger protein 329)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp329 (zinc finger protein 329)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG2712	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,469,019 - 82,570,542 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	82,430,646 - 82,570,552 (-)	Ensembl				GRCr8
mRatBN7.2	1	73,403,067 - 73,498,349 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,402,972 - 73,422,037 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	78,790,270 - 78,809,212 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,354,624 - 87,373,565 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,545,335 - 80,564,279 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,781,547 - 65,800,492 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,781,547 - 65,800,492 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	66,592,647 - 66,611,630 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	72,692,378 - 72,711,324 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	60,409,662 - 60,428,607 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

gallic acid (ISO)

gentamycin (EXP)

geraniol (ISO)

L-methionine (ISO)

miconazole (ISO)

ozone (ISO)

phenobarbital (ISO)

sodium arsenite (ISO)

succimer (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Zfp329
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,469,019 - 82,570,542 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	82,430,646 - 82,570,552 (-)	Ensembl				GRCr8
mRatBN7.2	1	73,403,067 - 73,498,349 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,402,972 - 73,422,037 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	78,790,270 - 78,809,212 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,354,624 - 87,373,565 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,545,335 - 80,564,279 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,781,547 - 65,800,492 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,781,547 - 65,800,492 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	66,592,647 - 66,611,630 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	72,692,378 - 72,711,324 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	60,409,662 - 60,428,607 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

ZNF329
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	58,126,248 - 58,155,104 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	58,126,248 - 58,155,110 (-)	Ensembl			hg38	GRCh38
GRCh37	19	58,637,615 - 58,662,156 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	63,329,507 - 63,353,960 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	55,681,629 - 55,706,077 (-)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	54,948,341 - 54,972,442 (-)	NCBI		HuRef
CHM1_1	19	58,631,971 - 58,656,404 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	61,222,728 - 61,251,579 (-)	NCBI		T2T-CHM13v2.0

Zfp329
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,537,705 - 12,552,844 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,538,904 - 12,552,785 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	12,803,778 - 12,818,895 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	12,804,977 - 12,818,858 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	13,389,127 - 13,404,209 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	11,705,161 - 11,719,037 (-)	NCBI		MGSCv36	mm8
Celera	7	10,428,087 - 10,443,153 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.64	NCBI

Znf329
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955584	886,280 - 887,902 (-)	Ensembl
ChiLan1.0	NW_004955584	885,269 - 897,940 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF329
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	64,391,808 - 64,430,141 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	66,179,888 - 66,218,189 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	55,129,445 - 55,163,051 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	63,963,038 - 63,988,942 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	63,964,591 - 63,966,216 (-)	Ensembl			panPan2	panpan1.1

ZNF329
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	99,748,690 - 99,765,988 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	100,143,620 - 100,160,921 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	100,389,578 - 100,406,880 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	100,389,752 - 100,406,877 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	100,034,775 - 100,052,076 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	99,761,213 - 99,764,319 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	100,516,457 - 100,519,563 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf329
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	68,779 - 80,033 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936897	626,692 - 629,203 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF329
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	62,797,139 - 62,818,471 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	62,799,478 - 62,818,501 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,396,907 - 57,416,685 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF329
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	50,434,026 - 50,461,923 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	50,435,611 - 50,437,236 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	3,717,188 - 3,750,147 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf329
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	362,469 - 364,037 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	337,384 - 365,131 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf329
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	174,369,422 - 174,383,234 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp329
627 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	828
Count of miRNA genes:	313
Interacting mature miRNAs:	437
Transcripts:	ENSRNOT00000026204
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

BF394691

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,405,405 - 73,405,496 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	65,798,063 - 65,798,153	NCBI	Rnor6.0
Rnor_5.0	1	66,609,201 - 66,609,291	UniSTS	Rnor5.0
RGSC_v3.4	1	72,694,717 - 72,694,807	UniSTS	RGSC3.4
Celera	1	60,426,178 - 60,426,268	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH141281

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,411,348 - 73,411,548 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	65,792,011 - 65,792,210	NCBI	Rnor6.0
Rnor_5.0	1	66,603,149 - 66,603,348	UniSTS	Rnor5.0
RGSC_v3.4	1	72,700,660 - 72,700,859	UniSTS	RGSC3.4
Celera	1	60,420,126 - 60,420,325	UniSTS
RH 3.4 Map	1	765.8	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

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Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	354	191	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010051709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026204 ⟹ ENSRNOP00000026204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,439,890 - 82,494,232 (-)	Ensembl
mRatBN7.2 Ensembl	1	73,402,972 - 73,422,037 (-)	Ensembl
Rnor_6.0 Ensembl	1	65,781,547 - 65,800,492 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118816 ⟹ ENSRNOP00000085808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	73,405,431 - 73,418,440 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120848 ⟹ ENSRNOP00000098460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,475,329 - 82,490,778 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124916 ⟹ ENSRNOP00000110254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,472,887 - 82,494,330 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150934 ⟹ ENSRNOP00000108075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,440,225 - 82,494,330 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154363 ⟹ ENSRNOP00000106254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,430,646 - 82,494,330 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155263 ⟹ ENSRNOP00000110039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,481,285 - 82,570,552 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157145 ⟹ ENSRNOP00000109760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,478,254 - 82,494,220 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173368 ⟹ ENSRNOP00000110510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	82,475,126 - 82,518,921 (-)	Ensembl

RefSeq Acc Id:

NM_001107477 ⟹ NP_001100947

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,475,256 - 82,494,201 (-)	NCBI
mRatBN7.2	1	73,403,067 - 73,422,014 (-)	NCBI
Rnor_6.0	1	65,781,547 - 65,800,492 (+)	NCBI
Rnor_5.0	1	66,592,647 - 66,611,630 (+)	NCBI
RGSC_v3.4	1	72,692,378 - 72,711,324 (-)	RGD
Celera	1	60,409,662 - 60,428,607 (+)	RGD

Sequence:

show sequence

CCACCGGCAACCTGTATATGGAACATGAGACTGAAAATAATAGCTCAGAATGTTCCTGAAGAAG
AAAGTGTTTCCTTTGAGGTAGAAATGGAAGGATTTACAAGAGAGGGTCCCTGCTTCCCCATTTT
AGGCGACAATTGGGACTGTGAGAACCAGGAAAGAAATTCAAGGCAGTCTCCTTTAATTGATGAG
AAAACAGAGGCTCAGGAAGCAAATTGTGACCATCATAATTTGGGGGAACATTTGAGTACAAACC
CAGCCCTTCTAGCATCTCAGAGAGTTCCTACAACAAACAGCTTCCATGTTCCTAACTCAGATAT
TAAAACTTTTGATTGTGACCAAACCTTACATAGTTGCCCCCAGAATTATACATTTAAGGGAACT
GGTGATGATGATGCTTGTGAAAAAGCCATCCATCCTTCCATGGAAGTCACTCAACTTGTAAGAA
ACCAAACGAGAGATAAACCCTATAAATACGCAGAAAGTATTAAATCTATAAACCACTTTACCAC
TGCCCTTTGTGATAAAAAAATTAAAAAAAGAAGCAAGAAATTTTACAAAGGTAAAGACTTTGGG
GACATCTTGGCCTTGAGCTCATCTCTTAATGAAAAAAGAAATCATTCTACTGAGAAACCCTATA
AATGTGCTGAATGTGGCAAATGCTTCAAACGGAACTCTTCTCTTGTTTTACACCATCGAACTCA
CACTGGTGAGAAACCTTATACCTGTAATGATTGTGGAAAATCATTCTCCAAGAACTACAACTTG
ATTGTACATCGAAGGATTCACACAGGAGAGAAACCCTATAAATGCAGTAAGTGTGGGAAAGCTT
TCAGTGATGGATCAGCTCTGACACAACACCAGAGGATTCACACAGGTGAGAAGCCTTATGCATG
TCTAGATTGTGGAAAAACTTTCAACAGAAATTCATCCCTGATTTTGCATCAAAGAACTCATACA
GGGGAAAAACCATACAGATGTAATGAATGTGGGAAACCCTTCACTGACATCTCTCACCTTACTG
TGCATCTCAGAATCCACACTGGTGAGAAGCCCTATGAGTGTAGCCGGTGTGGAAAGGCTTTCCG
AGATGGCTCATACCTCACTCAGCATGAGAGGACACACACTGGAGAGAAGCCTTTTGAATGTGTA
GAGTGTGGAAAATCCTTCAATCGCAACTCTCACCTCATTGTGCATCAGAAAATTCATTCTGGGG
AGAAACCCTATGAATGTAAAGAGTGTGGAAAAACTTTCATTGAGAGTGCATATCTCATCAGGCA
TCAGAGGATTCACACTGGTGAGAAGCCTTATGGTTGTAACCAGTGTCGTAAACTCTTCAGGAAC
ATCGCTGGACTTATCCGGCACCAGAGAATTCATACTGGTGAAAGGCCTTATGAGTGTAATCAGT
GTGGTAAAGCTTTTAGGGATAGCTCCTGTCTGACCAAACACCAGAGGATTCACACTAAGGAGAC
TCCGTACCAGTGTCTGAAGTGTGGAAAGTCCTTCAGGCAGAACACTCATCTGGTAGTACATCAG
AGACTTCATAACAGAGAGGGTCCGAGCCAGTGTCCTCACTGTGGAAAAATATTTAGAAGGAGCT
GGTGTCTTGCCCGACATCAGAGAACACACCTTGAAGAGCAGCCCACGGAAACATAGTGGACATG
TGCCATACTCTTCTTGAGTGAACAAAGGATTTGTCTTCAGATGTGACTTCCCTTGCTAACAGAA
AAGAATTCTTTATAAAAATATTGAGTATGACATATTCTATAATTGCATTATACTGTTACTAGGG
AACTCCTGAAGAGAGGATTGAATGGTAATTAATGTAGTAAAGGCTTCAGGGATGATTCAGCCTA
TACCAAACATGTAATTCATACACTGAAATAAGTGAGGAAGGCATTTTCTTAGAGATATCCCTCT
ATCTTTACAGCAGGATACTGAAATTGGAAAGAACCTGTGAATTCATTCAGTAGGTAACCAGTAG
GAGACATTTTTAATAGTATCACCTTATTATAAGCAAATGCTTATTAGAGTCAAAGTTTGTAAGT
GTTATTTGGAAGCAACAGTTTTGTCAGGAGTTTTTACTGTCCACAAAGGCATAGTGGTAGGATG
TCTCACACAGTGCCCTACAAACCACCACCGGATGTAGCTGGGTTTGCTGTTTGAATGCACTTCT
GTTTTATGGTGCTGCCAAAACACAGATGACTCATTTAATGAGGTGAAACTGGATATAGGAGTTG
CTTGTGATTGAGATGAAGTTGTCCCTCTTCAGACTAAAATATTCTTCGTGATGGAAAGGGCTGC
TTCTAAGAAATAGGATCCATTGCTATAGGTGTTGAACAAGAAAATACTGAATTGTATTTCAGTT
ATCACCTGCTTTCACCATTGTTGATCATTTTGGATACTAATTTGTGTAGAATTCAGGTCCTTTG
AAGCAAAATCCAAAAGTTTCATTGCCATCCTAAAAATACTTAGATCATTGCAAAAGAAGGCATA
AAAGTAGATTTATTATTACAATCATGTAAACATGTTCATATTTGGCTGTAGGTTAGCAGTGGAT
GATGGTATTAAGTGGTTTCTTAGGAGACTACAATTGTGTTCTTTTTCCCTTTTATTTATACTTT
TTTATATAATAATTTGGTAATGTATATAAAAGCGAAGCTAAAGGAAACAAATTGGAGTTTTCTT
GGATCTTCGCCAGTGAATAGAGGCCAAAGATACTGTCAGACATCCTATAAAGGCTAGATTATGG
CTACAGGAAGCCATAAGCGTCTCCAGGTGTATATTGACAGACACTTCTTTGGAATCAGAGCATC
CCGAAGCCTAGAATAATTTCTTTTAGAATTTTGAATATAAAGATTATGGCATTGTGGAGGGAGA
GGTATAAGAGTCTAAGGATAGGGAAGAGAAAGTTACAGAGAAATCTAGAATAATCCTAGCATGT
CCTTGCTTAGGGTAGTGTTAGCTGACTGAAAGCTAGACAGTTTTGTTGAAAGCTTCAAAGGCCT
CTGATTCCTCCTGAAAATTTTGACTTGACCCTGTCTTCTATCTTTTGATTCCTGTGAAAAGAGA
ATCATAAGTCTATTTTGAGATGATTAAGGCTGTTGAGTAGATTTGTAAGGAAGTTTAGACAACT
TAGTCTTCTGTATGCATGCTCTTGACAGCAGGATGGTTATCAGATGATGGGGATGGAGAGATAG
TGGTAGAGAGTGCTTGTTATTCTTCCAGAAGACCTAGGTTCGGTTTTAAGCACTTGTATGATGG
GAAGGTACTGGTGCCTAGTGGGTAGAGGCCAAAGATATTGTTAGACATCCTACAAAAGTAGCCC
TTGGAACAGTTATTTCAGAATATTAAGAATATTGTGATTGGGATGCACACACATGCACATACAG
AGCACACAATCATTTGTAACTTACAGATTGTCTCTATAATGTTATGTGTCTGAATAAGGCATTA
GCAAACACCTAGTGGACTATCTGTATCACTTAAGGCCAAACACTTTGGTGTCTGCTACTTTCAA
GAAAAACATGCATGTACCATTAGTGTTAGTAGTGTCCCTGCTTCTTGATCCTACATCTCAGATT
CTGGAACAGGAAATCTTCACTAAGCCTGCTGTGGCCTGAGGGAAGCACCTCAAGGAAGAGGCAT
CCACTCTGAAGTTTTAGTGAGTCCACATGGGGTTTGTACGAGTGTGAATTCTTTCCCCTTGCTC
TTTTCTAAAATTAGTTTTCTCAGATCAGGAAAAACTGCTGTCATGAAAATAACTACTGTATAGA
AGATGGACACTTTTGGCTAAAGAGGGAAAGGTGAGATTTGATCTGGGAGCGTTCCAGATGACTT
GCAATGCAGCCTGGACAATTTTTGGTGGTAGGCCAGAATGATTAGGGAAAAAGACAAGAGAGTA
TACTGGAATATCAGGATGAGTACCATTTAATCACACAGCCCTTAAATAGGTAGAGAACTTGGGC
TAGAATCAGATGGAGAATGTGAAGGTAGAATATTTAAAGAATAAACATTTATTTTACTTTTCCT
GACTTTAAGGAGCACCTAACTTACTGTTCTGATTTTAAGGCTGGAGAATCCACAATATGAATGG
CTTCTAAAAGCCAGAGAAGCAAGAAAATGAATTCTCCCCAAAGTCTCCCCAAAAGGAACTATCC
CTGTTCTTATTAGTCTATTGAGATTGAGTGGATTCAAGTCCTAAACTGCGATAACTGATGTATG
GTTTTAAGCCGTGTTTTTTGTGGTAATTTGTTATATTATCTGTAGGTGATATGCTTCCCTCAAT
AGTTCCTTTTAGACTCCTTACTGAAGTGTGTCCTTTTACCGAGCAAGTTAAGTAAACCAACCCT
TTCTACTCCATACCTATAAAATTTATTTTATAGGAAAAATAGATTTCTTTTGGCTCTGTTGACC
TCTGTGCATTCACCATTTTAACAGCCCTGAATTCTAATAATAGTTTAGAGATTTAAATACTATG
AATGTTCAAGGGCGTGCTGGTGTACACCTTTAATGCCAGAACTGAGGAGGCAGAAGCAGATGGA
TCTCTTAAGTTTGAGGCCAGCCTAGTCTACAGAGTGAATTCCAGTACAGCTAGGGGCTATGTAG
TGAGACCCTGACAATAAGAAATAATAATAAAATAAGTTCTGTGAGTGAGTAGCCATTTGTGAAA
ATAAATCTCAGAAGCAATGGAATAACTTTTCTGTAACTTTAATCCCATCCCCTTCTACTTGGTT
GGCCAAGAAGGCATATTTCAGCACCATAAAGCATGCCCACAGCACAAGAATGTGGCAGTGCCAG
AGCAGGGTTTCATGTCTAAAATGGAGATTGGAAACATTTATAATTAAGGTCAGTATCTTAACTA
GTTACTATTAACCCACATTCTTTTGATTTTTCAGATTATCGGTGCTCAAGTATGCCTGCCTGCA
GATTGTTCACTAGGCTGGTCCAACTTCATGTCTTTCTTACTTTAGCAACTGTATAGAGTACATG
CAGTAAGAGTTGGTACTGTAGCAGAAAGCAGAACCAGCTGTTTACAATTCAGCAGGGGAGAAAA
AAAATAAATGCACAGCATGTATCAGATGGTGGTTGATGCCTGGGAGAAATATAAAGATGAGAAG
GGGGATGGGGGTGTCTATATTGGGTGGACGTGATGACAGTTTTAAAAAGCTTGATCATTTCCTT
TCTGAATGAAAGGCAATTACATGTGTGACATTCTAGGGGTGTGATGTCCTGCAACAAGAGGTTA
AGATTTAGGGAGGAGAAACCTTCCACCATATGAATTACAGGGAAGAGCAATTAAGTCATAGATG
GAACTTCTTCATGAGCAGCAGTGAAAGAAATGGCTTCATTGCAGAGGCAGGTGTGGAGAACAAA
ACTTTGTGAAACGGAAAGTCCATTTACAGGAAAACATCTATGATTCTGAAAAGATAAATTGTTT
TAGAATATGCATAATGAAGTCCTAGCCGAAGAAAAGAACAAGTATGTAAGTATAAGCTTGATAA
CCAAAGGTATTCAGCATTAGTGGTCATTTCTGATAAAATAGACTAGTGTTCAAGTTTTAAATAC
TAAGTGAACTATTCAGTGGTTCTTGATAGTCTCACCAGGTTGTTCATTCACTTCTATTCTGTAA
TTTAAGGACTTTTTCATTATTCATAGAAAAGCCCTTTGTATCTATTAGTATCCTCCATTTCTCT
GACCCTGGCAATCACTAATCTCTTTTCACTGTGTATTTGCCAATTCTTTGCATTCTACATCAAT
GGAAAAATAAGACACGTGGCCCTTTGTAACTTCATTTAGTATAATGTTTTCAAGGTTCATGCTG
TAAGTTCAAGGTCCTTTTTGTGGCTGAAAAATATTTTGCCATATGATTAAAACTGTATTTTGCT
TATTGGTTGATGGATATTTCAGCTTCTACTTTTTTGGCTAATAATAATAATAATACTAAGAATA
ATGCTGATGAACACATGCAAACTCATGTGCCAATAAATTTTCAGTACTCTTGGGTAGATACTTA
GGAATGGAATCGCTGGATCTTTGTTTGCTTTTTGGGGGAACTGATGTCCATTTTACATTTGACT
AATATATGACTACTTTGACTTCTTCATGACCTTACCAACATTTATTTATTTTTTTGTGCTAGTG
GTGTGAAGTGTTATCTTGTGGTCTGGGGAAAATAATTTATAAAGTTGAAAATCTATACCTTATC
CCTTACCCCATGGATCAGCATTTTTTCCTGCAAGGGGAAGACAATAGTTTGAACTGTGCACCAT
GTCATCTCTGCTGCAGGTTCTCAGCCACAGGACTGTAATGTGGAGGTAGCTATAGGGATTGGTA
AGCGAGTGTGTGTGAACGTGTCCGACAAAACTTTACATACGGACTCTGATTCTTTAAAATTGTG
AAACTTACAGAAAATTCAAGTTTCATGTAGCAAAGTAAGCCAGGCCTGGTGGCGCTCACGTGTA
AATTTCAGCACTTAGAAGCAGTAACAGGATGATTGCTGCAAGTCCCAGGTCAGCATGACTACAT
AGGGAGACTCAGTCTCAAAAAACCAAAAAGCAAAACTAAAATAAAGTATTCTTTGTCCAAAACC
ATAAGATTTGGAGTAGCATTTACCCAGGGGCTGTAGTTTGATAGACAAACTTGTTGCAGACAAA
ACGAAGTGGAAAGGTAGCTTGAAGCTGCTAGTTGAGAATATCAAACTTTTTTTTTTTTTGGTTA
TCTTGGTATAGGCAAACATTTTTAAAGTGAAATGAATATCGGAGAAAAGGTTATAGTAAATTTA
AGAATTCATGTGCATAAGAAAATCCATACTATGTAAACGAAATGGCAAGCAATAGAAAAAAAAA
ACCGTTGTAGCTCATAGAGCAGACAGAAATGTTACTTAAATATGTTAAGGATCCAGCATTGCAA
AGATAAAACTCATTGAAAATGTGGTCAAACACTTTGGATCTGTGCCATTTTGAATGAGGAATCC
AAATAGCCAATTCATTCATGGCACTGCCCAATTTCGTTACGAATTTCATAATGAATTTCATTCG
TTATAGAAATCCCAGGATACTGTATCTGGATGAATATCTTTTTTTTTTTTTTTTTTTGGTTCTT
TTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCTCTTCCTAGGCAAGCGCTCTACCACTGAG
CTAAATCCCTAACCCCCTGGATGAATATCTTAAGTGTTGACAGGGAACTTGTTGACAAACATAT
ATTTTGCTTTTGATTCAGGAGGAAGTCTTTCATATGACTATATATTCTCAGAAACAATTACAGT
TCTAGTCACTACCTGGACAAGAAACCGTGGGTAGTCACAGCCATTTCTAGTTACAAAGAGGCTG
GGTGGGATGGGGTTTTACTGATGTGTTTATAAAATGATAAAGAGAGGATATGTCCTGGGTTTCG
ATACCAATGCTGTGTTTATAAAAAGATAAAGAGGGGGGATTATGTTCTATGGAGGTGTGGTGAG
GTATGGGAAAGGGGGCACCTCAGGGGATCCCTGCTGAGACATCCCTTCCCAGTGAGGGATCAGC
CACACGACCTATAGTATAGAATAGAATTTATTCAGGGCATGGGGAGGGGAGTTAAGAGGGTAGT
AAGGGCAGAAAGTAGAGAGAGGTAGAGTAGAGGCCGGCCATGGGCACGTGGAGAGAAGTGGGGA
AGGGAATGGGGAGAGAAGAGACAGAGGGGGAAGAGGGTAAGAGCAAGAGGGGAACAAGAGAGAG
CAAGAGCGTGAGGAGGGAGGAAGCAGCCCCTTTTACAGTGTCAGGCATACTTGGCTGTTGCCAG
GTAACTGTGGGGCGGAGCGTACCTGGCTGTTGCCAGGTAACCGTGGGGGTGGAGCTTACGCTAG
GTAATTGTGGGGGTGGAACTTCGAATGCTAACTCTATCTCAGGCGGGACTGGAACTCACAGTTT
GCCAGGCTGGCAGAGAACTCAAGAATTCTTCCTGGGTCTCCCAAGTAGGGTGTTTGAGAGTGCA
GATGTTTCAAATGTGAGCCATTAAGCCTGACACAGCCATTTCCTCTAACAATTCTGGAAACAGT
ACTAACCTCCTTTTATGCACCATGGAAAATTATACCAGTACATAAAAGTGAAGCTGGCGACCAT
CAAGAGGAAACAGCCATAAACAGATCGCCTTCTGCAGTGCTTTCGGGTACTGTGGGCATTGGTA
ATTCAGCGTTTGAGGGGCAGACCAGGAGGAGACATTGTTTCAAAGTGCCAAGTACTGCAGATGA
GTGTCAGGAACTAGAAGTCACTTCCTGATAGGCAGCTAGGGAGAGGGGCGGTGGCTAGGGAATA
CAAATAGTAAAGTTATAATATGACTAGCTTTTCCCTCACCTTCCTTACCTGAGACAAAAGTCTG
GCAGCTTAAACAAAGGCCTTGCGGGCTTTTTCCTCTGCCAGTAGGATCCCCGCTGATGGACTGG
CTCAGCAAGTTCAAGAGATGTGGGTCAGTCAGCTGACCTGTTTTTCTTCAAACCGAACTCTCCA
CAATTGGGGGAAAACCCCTCAAAAGATGAATCAAAAGATGAAAAAACTGCCTTGGAGGAGAAGC
TGGGTTGCTTTGCAGAGTTTTTTGTTTTTTGTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTAA
TGTGTTCTTCCTCACTTCCTAATAAAAGCCATTCTTGATGGACTGA

hide sequence

RefSeq Acc Id:

XM_006228109 ⟹ XP_006228171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,469,019 - 82,494,179 (-)	NCBI
mRatBN7.2	1	73,405,163 - 73,422,021 (-)	NCBI
Rnor_6.0	1	65,781,731 - 65,795,323 (+)	NCBI
Rnor_5.0	1	66,592,647 - 66,611,630 (+)	NCBI

Sequence:

show sequence

CCGCTGTCCTCACGGGTGTGCACGCCCCCGGGTCGGAGGGATTCCTGTCTGGCTGGTGTAGACG
CTCCTCCGCTCTTCTATCGGTATGGAACATGAGACTGAAAATAATAGCTCAGAATGTTCCTGAA
GAAGAAAGTGTTTCCTTTGAGGTAGAAATGGAAGGATTTACAAGAGAGGGTCCCTGCTTCCCCA
TTTTAGGCGACAATTGGGACTGTGAGAACCAGGAAAGAAATTCAAGGCAGTCTCCTTTAATTGA
TGAGAAAACAGAGGCTCAGGAAGCAAATTGTGACCATCATAATTTGGGGGAACATTTGAGTACA
AACCCAGCCCTTCTAGCATCTCAGAGAGTTCCTACAACAAACAGCTTCCATGTTCCTAACTCAG
ATATTAAAACTTTTGATTGTGACCAAACCTTACATAGTTGCCCCCAGAATTATACATTTAAGGG
AACTGGTGATGATGATGCTTGTGAAAAAGCCATCCATCCTTCCATGGAAGTCACTCAACTTGTA
AGAAACCAAACGAGAGATAAACCCTATAAATACGCAGAAAGTATTAAATCTATAAACCACTTTA
CCACTGCCCTTTGTGATAAAAAAATTAAAAAAAGAAGCAAGAAATTTTACAAAGGTAAAGACTT
TGGGGACATCTTGGCCTTGAGCTCATCTCTTAATGAAAAAAGAAATCATTCTACTGAGAAACCC
TATAAATGTGCTGAATGTGGCAAATGCTTCAAACGGAACTCTTCTCTTGTTTTACACCATCGAA
CTCACACTGGTGAGAAACCTTATACCTGTAATGATTGTGGAAAATCATTCTCCAAGAACTACAA
CTTGATTGTACATCGAAGGATTCACACAGGAGAGAAACCCTATAAATGCAGTAAGTGTGGGAAA
GCTTTCAGTGATGGATCAGCTCTGACACAACACCAGAGGATTCACACAGGTGAGAAGCCTTATG
CATGTCTAGATTGTGGAAAAACTTTCAACAGAAATTCATCCCTGATTTTGCATCAAAGAACTCA
TACAGGGGAAAAACCATACAGATGTAATGAATGTGGGAAACCCTTCACTGACATCTCTCACCTT
ACTGTGCATCTCAGAATCCACACTGGTGAGAAGCCCTATGAGTGTAGCCGGTGTGGAAAGGCTT
TCCGAGATGGCTCATACCTCACTCAGCATGAGAGGACACACACTGGAGAGAAGCCTTTTGAATG
TGTAGAGTGTGGAAAATCCTTCAATCGCAACTCTCACCTCATTGTGCATCAGAAAATTCATTCT
GGGGAGAAACCCTATGAATGTAAAGAGTGTGGAAAAACTTTCATTGAGAGTGCATATCTCATCA
GGCATCAGAGGATTCACACTGGTGAGAAGCCTTATGGTTGTAACCAGTGTCGTAAACTCTTCAG
GAACATCGCTGGACTTATCCGGCACCAGAGAATTCATACTGGTGAAAGGCCTTATGAGTGTAAT
CAGTGTGGTAAAGCTTTTAGGGATAGCTCCTGTCTGACCAAACACCAGAGGATTCACACTAAGG
AGACTCCGTACCAGTGTCTGAAGTGTGGAAAGTCCTTCAGGCAGAACACTCATCTGGTAGTACA
TCAGAGACTTCATAACAGAGAGGGTCCGAGCCAGTGTCCTCACTGTGGAAAAATATTTAGAAGG
AGCTGGTGTCTTGCCCGACATCAGAGAACACACCTTGAAGAGCAGCCCACGGAAACATAGTGGA
CATGTGCCATACTCTTCTTGAGTGAACAAAGGATTTGTCTTCAGATGTGACTTCCCTTGCTAAC
AGAAAAGAATTCTTTATAAAAATATTGAGTATGACATATTCTATAATTGCATTATACTGTTACT
AGGGAACTCCTGAAGAGAGGATTGAATGGTAATTAATGTAGTAAAGGCTTCAGGGATGATTCAG
CCTATACCAAACATGTAATTCATACACTGAAATAAGTGAGGAAGGCATTTTCTTAGAGATATCC
CTCTATCTTTACAGCAGGATACTGAAATTGGAAAGAACCTGTGAATTCATTCAGTAGGTAACCA
GTAGGAGACATTTTTAATAGTATCACCTTATTATAAGCAAATGCTTATTAGAGTCAAAGTTTGT
AAGTGTTATTTGGAAGCAACAGTTTTGTCAGGAGTTTTTACTGTCCACAAAGGCATAGTGGTAG
GATGTCTCACACAGTGCCCTACAAACCACCACCGGATGTAGCTGGGTTTGCTGTTTGAATGCAC
TTCTGTTTTATGGTGCTGCCAAAACACAGATGACTCATTTAATGAGGTGAAACTGGATATAGGA
GTTGCTTGTGATTGAGATGAAGTTGTCCCTCTTCAGACTAAAATATTCTTCGTGATGGAAAGGG
CTGCTTCTAAGAAATAGGATCCATTGCTATAGGTGTTGAACAAGAAAATACTGAATTGTATTTC
AGTTATCACCTGCTTTCACCATTGTTGATCATTTTGGATACTAATTTGTGTAGAATTCAGGTCC
TTTGAAGCAAAATCCAAAAGTTTCATTGCCATCCTAAAAATACTTAGATCATTGCAAAAGAAGG
CATAAAAGTAGATTTATTATTACAATCATGTAAACATGTTCATATTTGGCTGTAGGTTAGCAGT
GGATGATGGTATTAAGTGGTTTCTTAGGAGACTACAATTGTGTTCTTTTTCCCTTTTATTTATA
CTTTTTTATATAATAATTTGGTAATGTATATAAAAGCGAAGCTAAAGGAAACAAATTGGAGTTT
TCTTGGATCTTCGCCAGTGAATAGAGGCCAAAGATACTGTCAGACATCCTATAAAGGCTAGATT
ATGGCTACAGGAAGCCATAAGCGTCTCCAGGTGTATATTGACAGACACTTCTTTGGAATCAGAG
CATCCCGAAGCCTAGAATAATTTCTTTTAGAATTTTGAATATAAAGATTATGGCATTGTGGAGG
GAGAGGTATAAGAGTCTAAGGATAGGGAAGAGAAAGTTACAGAGAAATCTAGAATAATCCTAGC
ATGTCCTTGCTTAGGGTAGTGTTAGCTGACTGAAAGCTAGACAGTTTTGTTGAAAGCTTCAAAG
GCCTCTGATTCCTCCTGAAAATTTTGACTTGACCCTGTCTTCTATCTTTTGATTCCTGTGAAAA
GAGAATCATAAGTCTATTTTGAGATGATTAAGGCTGTTGAGTAGATTTGTAAGGAAGTTTAGAC
AACTTAGTCTTCTGTATGCATGCTCTTGACAGCAGGATGGTTATCAGATGATGGGGATGGAGAG
ATAGTGGTAGAGAGTGCTTGTTATTCTTCCAGAAGACCTAGGTTCGGTTTTAAGCACTTGTATG
ATGGGAAGGTACTGGTGCCTAGTGGGTAGAGGCCAAAGATATTGTTAGACATCCTACAAAAGTA
GCCCTTGGAACAGTTATTTCAGAATATTAAGAATATTGTGATTGGGATGCACACACATGCACAT
ACAGAGCACACAATCATTTGTAACTTACAGATTGTCTCTATAATGTTATGTGTCTGAATAAGGC
ATTAGCAAACACCTAGTGGACTATCTGTATCACTTAAGGCCAAACACTTTGGTGTCTGCTACTT
T

hide sequence

RefSeq Acc Id:

XM_006228110 ⟹ XP_006228172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,469,019 - 82,493,927 (-)	NCBI
mRatBN7.2	1	73,405,163 - 73,421,740 (-)	NCBI
Rnor_6.0	1	65,781,913 - 65,795,323 (+)	NCBI
Rnor_5.0	1	66,592,647 - 66,611,630 (+)	NCBI

Sequence:

show sequence

GCCCTTCAGATTTGCCGGTTTCGGGCCGAGTTGGCTGCCGGGCTCCAATGAGCGGCGGGGCTGT
TTTCCGTGGAATCTTCTAGTATGGAACATGAGACTGAAAATAATAGCTCAGAATGTTCCTGAAG
AAGAAAGTGTTTCCTTTGAGGTAGAAATGGAAGGATTTACAAGAGAGGGTCCCTGCTTCCCCAT
TTTAGGCGACAATTGGGACTGTGAGAACCAGGAAAGAAATTCAAGGCAGTCTCCTTTAATTGAT
GAGAAAACAGAGGCTCAGGAAGCAAATTGTGACCATCATAATTTGGGGGAACATTTGAGTACAA
ACCCAGCCCTTCTAGCATCTCAGAGAGTTCCTACAACAAACAGCTTCCATGTTCCTAACTCAGA
TATTAAAACTTTTGATTGTGACCAAACCTTACATAGTTGCCCCCAGAATTATACATTTAAGGGA
ACTGGTGATGATGATGCTTGTGAAAAAGCCATCCATCCTTCCATGGAAGTCACTCAACTTGTAA
GAAACCAAACGAGAGATAAACCCTATAAATACGCAGAAAGTATTAAATCTATAAACCACTTTAC
CACTGCCCTTTGTGATAAAAAAATTAAAAAAAGAAGCAAGAAATTTTACAAAGGTAAAGACTTT
GGGGACATCTTGGCCTTGAGCTCATCTCTTAATGAAAAAAGAAATCATTCTACTGAGAAACCCT
ATAAATGTGCTGAATGTGGCAAATGCTTCAAACGGAACTCTTCTCTTGTTTTACACCATCGAAC
TCACACTGGTGAGAAACCTTATACCTGTAATGATTGTGGAAAATCATTCTCCAAGAACTACAAC
TTGATTGTACATCGAAGGATTCACACAGGAGAGAAACCCTATAAATGCAGTAAGTGTGGGAAAG
CTTTCAGTGATGGATCAGCTCTGACACAACACCAGAGGATTCACACAGGTGAGAAGCCTTATGC
ATGTCTAGATTGTGGAAAAACTTTCAACAGAAATTCATCCCTGATTTTGCATCAAAGAACTCAT
ACAGGGGAAAAACCATACAGATGTAATGAATGTGGGAAACCCTTCACTGACATCTCTCACCTTA
CTGTGCATCTCAGAATCCACACTGGTGAGAAGCCCTATGAGTGTAGCCGGTGTGGAAAGGCTTT
CCGAGATGGCTCATACCTCACTCAGCATGAGAGGACACACACTGGAGAGAAGCCTTTTGAATGT
GTAGAGTGTGGAAAATCCTTCAATCGCAACTCTCACCTCATTGTGCATCAGAAAATTCATTCTG
GGGAGAAACCCTATGAATGTAAAGAGTGTGGAAAAACTTTCATTGAGAGTGCATATCTCATCAG
GCATCAGAGGATTCACACTGGTGAGAAGCCTTATGGTTGTAACCAGTGTCGTAAACTCTTCAGG
AACATCGCTGGACTTATCCGGCACCAGAGAATTCATACTGGTGAAAGGCCTTATGAGTGTAATC
AGTGTGGTAAAGCTTTTAGGGATAGCTCCTGTCTGACCAAACACCAGAGGATTCACACTAAGGA
GACTCCGTACCAGTGTCTGAAGTGTGGAAAGTCCTTCAGGCAGAACACTCATCTGGTAGTACAT
CAGAGACTTCATAACAGAGAGGGTCCGAGCCAGTGTCCTCACTGTGGAAAAATATTTAGAAGGA
GCTGGTGTCTTGCCCGACATCAGAGAACACACCTTGAAGAGCAGCCCACGGAAACATAGTGGAC
ATGTGCCATACTCTTCTTGAGTGAACAAAGGATTTGTCTTCAGATGTGACTTCCCTTGCTAACA
GAAAAGAATTCTTTATAAAAATATTGAGTATGACATATTCTATAATTGCATTATACTGTTACTA
GGGAACTCCTGAAGAGAGGATTGAATGGTAATTAATGTAGTAAAGGCTTCAGGGATGATTCAGC
CTATACCAAACATGTAATTCATACACTGAAATAAGTGAGGAAGGCATTTTCTTAGAGATATCCC
TCTATCTTTACAGCAGGATACTGAAATTGGAAAGAACCTGTGAATTCATTCAGTAGGTAACCAG
TAGGAGACATTTTTAATAGTATCACCTTATTATAAGCAAATGCTTATTAGAGTCAAAGTTTGTA
AGTGTTATTTGGAAGCAACAGTTTTGTCAGGAGTTTTTACTGTCCACAAAGGCATAGTGGTAGG
ATGTCTCACACAGTGCCCTACAAACCACCACCGGATGTAGCTGGGTTTGCTGTTTGAATGCACT
TCTGTTTTATGGTGCTGCCAAAACACAGATGACTCATTTAATGAGGTGAAACTGGATATAGGAG
TTGCTTGTGATTGAGATGAAGTTGTCCCTCTTCAGACTAAAATATTCTTCGTGATGGAAAGGGC
TGCTTCTAAGAAATAGGATCCATTGCTATAGGTGTTGAACAAGAAAATACTGAATTGTATTTCA
GTTATCACCTGCTTTCACCATTGTTGATCATTTTGGATACTAATTTGTGTAGAATTCAGGTCCT
TTGAAGCAAAATCCAAAAGTTTCATTGCCATCCTAAAAATACTTAGATCATTGCAAAAGAAGGC
ATAAAAGTAGATTTATTATTACAATCATGTAAACATGTTCATATTTGGCTGTAGGTTAGCAGTG
GATGATGGTATTAAGTGGTTTCTTAGGAGACTACAATTGTGTTCTTTTTCCCTTTTATTTATAC
TTTTTTATATAATAATTTGGTAATGTATATAAAAGCGAAGCTAAAGGAAACAAATTGGAGTTTT
CTTGGATCTTCGCCAGTGAATAGAGGCCAAAGATACTGTCAGACATCCTATAAAGGCTAGATTA
TGGCTACAGGAAGCCATAAGCGTCTCCAGGTGTATATTGACAGACACTTCTTTGGAATCAGAGC
ATCCCGAAGCCTAGAATAATTTCTTTTAGAATTTTGAATATAAAGATTATGGCATTGTGGAGGG
AGAGGTATAAGAGTCTAAGGATAGGGAAGAGAAAGTTACAGAGAAATCTAGAATAATCCTAGCA
TGTCCTTGCTTAGGGTAGTGTTAGCTGACTGAAAGCTAGACAGTTTTGTTGAAAGCTTCAAAGG
CCTCTGATTCCTCCTGAAAATTTTGACTTGACCCTGTCTTCTATCTTTTGATTCCTGTGAAAAG
AGAATCATAAGTCTATTTTGAGATGATTAAGGCTGTTGAGTAGATTTGTAAGGAAGTTTAGACA
ACTTAGTCTTCTGTATGCATGCTCTTGACAGCAGGATGGTTATCAGATGATGGGGATGGAGAGA
TAGTGGTAGAGAGTGCTTGTTATTCTTCCAGAAGACCTAGGTTCGGTTTTAAGCACTTGTATGA
TGGGAAGGTACTGGTGCCTAGTGGGTAGAGGCCAAAGATATTGTTAGACATCCTACAAAAGTAG
CCCTTGGAACAGTTATTTCAGAATATTAAGAATATTGTGATTGGGATGCACACACATGCACATA
CAGAGCACACAATCATTTGTAACTTACAGATTGTCTCTATAATGTTATGTGTCTGAATAAGGCA
TTAGCAAACACCTAGTGGACTATCTGTATCACTTAAGGCCAAACACTTTGGTGTCTGCTACTTT

hide sequence

RefSeq Acc Id:

XM_039111111 ⟹ XP_038967039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,469,019 - 82,570,542 (-)	NCBI
mRatBN7.2	1	73,405,547 - 73,498,349 (-)	NCBI

RefSeq Acc Id:

XR_010051709

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,469,019 - 82,570,542 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100947	(Get FASTA)	NCBI Sequence Viewer
	XP_006228171	(Get FASTA)	NCBI Sequence Viewer
	XP_006228172	(Get FASTA)	NCBI Sequence Viewer
	XP_038967039	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75782	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026204.4
	ENSRNOP00000098460.1
	ENSRNOP00000106254
	ENSRNOP00000106254.1
	ENSRNOP00000108075.1
	ENSRNOP00000109760
	ENSRNOP00000109760.1
	ENSRNOP00000110039
	ENSRNOP00000110039.1
	ENSRNOP00000110254
	ENSRNOP00000110254.1
	ENSRNOP00000110510.1

RefSeq Acc Id:

NP_001100947 ⟸ NM_001107477

- UniProtKB:

D4AA65 (UniProtKB/TrEMBL), A6KQN2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLKIIAQNVPEEESVSFEVEMEGFTREGPCFPILGDNWDCENQERNSRQSPLIDEKTEAQEAN
CDHHNLGEHLSTNPALLASQRVPTTNSFHVPNSDIKTFDCDQTLHSCPQNYTFKGTGDDDACEK
AIHPSMEVTQLVRNQTRDKPYKYAESIKSINHFTTALCDKKIKKRSKKFYKGKDFGDILALSSS
LNEKRNHSTEKPYKCAECGKCFKRNSSLVLHHRTHTGEKPYTCNDCGKSFSKNYNLIVHRRIHT
GEKPYKCSKCGKAFSDGSALTQHQRIHTGEKPYACLDCGKTFNRNSSLILHQRTHTGEKPYRCN
ECGKPFTDISHLTVHLRIHTGEKPYECSRCGKAFRDGSYLTQHERTHTGEKPFECVECGKSFNR
NSHLIVHQKIHSGEKPYECKECGKTFIESAYLIRHQRIHTGEKPYGCNQCRKLFRNIAGLIRHQ
RIHTGERPYECNQCGKAFRDSSCLTKHQRIHTKETPYQCLKCGKSFRQNTHLVVHQRLHNREGP
SQCPHCGKIFRRSWCLARHQRTHLEEQPTET

hide sequence

RefSeq Acc Id:	XP_006228171 ⟸ XM_006228109
- Peptide Label:	isoform X2
- UniProtKB:	D4AA65 (UniProtKB/TrEMBL), A6KQN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLKIIAQNVPEEESVSFEVEMEGFTREGPCFPILGDNWDCENQERNSRQSPLIDEKTEAQEAN CDHHNLGEHLSTNPALLASQRVPTTNSFHVPNSDIKTFDCDQTLHSCPQNYTFKGTGDDDACEK AIHPSMEVTQLVRNQTRDKPYKYAESIKSINHFTTALCDKKIKKRSKKFYKGKDFGDILALSSS LNEKRNHSTEKPYKCAECGKCFKRNSSLVLHHRTHTGEKPYTCNDCGKSFSKNYNLIVHRRIHT GEKPYKCSKCGKAFSDGSALTQHQRIHTGEKPYACLDCGKTFNRNSSLILHQRTHTGEKPYRCN ECGKPFTDISHLTVHLRIHTGEKPYECSRCGKAFRDGSYLTQHERTHTGEKPFECVECGKSFNR NSHLIVHQKIHSGEKPYECKECGKTFIESAYLIRHQRIHTGEKPYGCNQCRKLFRNIAGLIRHQ RIHTGERPYECNQCGKAFRDSSCLTKHQRIHTKETPYQCLKCGKSFRQNTHLVVHQRLHNREGP SQCPHCGKIFRRSWCLARHQRTHLEEQPTET hide sequence

RefSeq Acc Id:	XP_006228172 ⟸ XM_006228110
- Peptide Label:	isoform X2
- UniProtKB:	D4AA65 (UniProtKB/TrEMBL), A6KQN2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLKIIAQNVPEEESVSFEVEMEGFTREGPCFPILGDNWDCENQERNSRQSPLIDEKTEAQEAN CDHHNLGEHLSTNPALLASQRVPTTNSFHVPNSDIKTFDCDQTLHSCPQNYTFKGTGDDDACEK AIHPSMEVTQLVRNQTRDKPYKYAESIKSINHFTTALCDKKIKKRSKKFYKGKDFGDILALSSS LNEKRNHSTEKPYKCAECGKCFKRNSSLVLHHRTHTGEKPYTCNDCGKSFSKNYNLIVHRRIHT GEKPYKCSKCGKAFSDGSALTQHQRIHTGEKPYACLDCGKTFNRNSSLILHQRTHTGEKPYRCN ECGKPFTDISHLTVHLRIHTGEKPYECSRCGKAFRDGSYLTQHERTHTGEKPFECVECGKSFNR NSHLIVHQKIHSGEKPYECKECGKTFIESAYLIRHQRIHTGEKPYGCNQCRKLFRNIAGLIRHQ RIHTGERPYECNQCGKAFRDSSCLTKHQRIHTKETPYQCLKCGKSFRQNTHLVVHQRLHNREGP SQCPHCGKIFRRSWCLARHQRTHLEEQPTET hide sequence

Ensembl Acc Id:

ENSRNOP00000026204 ⟸ ENSRNOT00000026204

RefSeq Acc Id:	XP_038967039 ⟸ XM_039111111
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000085808 ⟸ ENSRNOT00000118816

Ensembl Acc Id:

ENSRNOP00000110254 ⟸ ENSRNOT00000124916

Ensembl Acc Id:

ENSRNOP00000098460 ⟸ ENSRNOT00000120848

Ensembl Acc Id:

ENSRNOP00000109760 ⟸ ENSRNOT00000157145

Ensembl Acc Id:

ENSRNOP00000110510 ⟸ ENSRNOT00000173368

Ensembl Acc Id:

ENSRNOP00000108075 ⟸ ENSRNOT00000150934

Ensembl Acc Id:

ENSRNOP00000106254 ⟸ ENSRNOT00000154363

Ensembl Acc Id:

ENSRNOP00000110039 ⟸ ENSRNOT00000155263

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AA65-F1-model_v2	AlphaFold	D4AA65	1-543	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689676

Promoter ID:

EPDNEW_R201

Type:

multiple initiation site

Name:

Zfp329_1

Description:

zinc finger protein 329

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	65,781,527 - 65,781,587	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565029	AgrOrtholog
BioCyc Gene	G2FUF-60719	BioCyc
Ensembl Genes	ENSRNOG00000019376	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026204.7	UniProtKB/TrEMBL
	ENSRNOT00000120848.2	UniProtKB/TrEMBL
	ENSRNOT00000124916	ENTREZGENE
	ENSRNOT00000124916.1	UniProtKB/TrEMBL
	ENSRNOT00000150934.1	UniProtKB/TrEMBL
	ENSRNOT00000154363	ENTREZGENE
	ENSRNOT00000154363.1	UniProtKB/TrEMBL
	ENSRNOT00000155263	ENTREZGENE
	ENSRNOT00000155263.1	UniProtKB/TrEMBL
	ENSRNOT00000157145	ENTREZGENE
	ENSRNOT00000157145.1	UniProtKB/TrEMBL
	ENSRNOT00000173368.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	C2H2-ZF_Transcription_Reg	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:308361	UniProtKB/TrEMBL
NCBI Gene	308361	ENTREZGENE
PANTHER	ODD-SKIPPED - RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 208-LIKE	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp329	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019376	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0ABK0M401_RAT	UniProtKB/TrEMBL
	A6KQN2	ENTREZGENE, UniProtKB/TrEMBL
	D4AA65	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zfp329	zinc finger protein 329	Zfp329_predicted	zinc finger protein 329 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Zfp329_predicted	zinc finger protein 329 (predicted)	RGD1565029_predicted	similar to 4632409L22Rik protein (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1565029_predicted	similar to 4632409L22Rik protein (predicted)	LOC308361	similar to 4632409L22Rik protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC308361	similar to 4632409L22Rik protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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