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Gene: Celf5 (CUGBP, Elav-like family member 5) Rattus norvegicus

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Symbol:

Celf5

Name:

CUGBP, Elav-like family member 5

RGD ID:

1565016

Description:

Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site recognition and regulation of alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF5 (CUGBP Elav-like family member 5); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bruno-like 5, RNA binding protein; bruno-like 5, RNA binding protein (Drosophila); Brunol5; CUG-BP- and ETR-3-like factor 5; CUGBP Elav-like family member 5; LOC314647; RGD1565016; similar to bruno-like 5, RNA binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CELF5 (CUGBP Elav-like family member 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Celf5 (CUGBP, Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Celf5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CELF5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CELF5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Celf5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CELF5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CELF5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Celf5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Celf5 (CUGBP Elav-like family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RAMAC (RNA guanine-7 methyltransferase activating subunit)	HGNC	OMA
Homo sapiens (human):	RAMACL (RNA guanine-7 methyltransferase activating subunit like)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CELF5 (CUGBP Elav-like family member 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CELF5 (CUGBP Elav-like family member 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Celf5 (CUGBP, Elav-like family member 5)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	celf5a (cugbp, Elav-like family member 5a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	celf5a (cugbp, Elav-like family member 5a)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	celf5b (cugbp, Elav-like family member 5b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	celf5b (cugbp, Elav-like family member 5b)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	bru3	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-75	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-75	Alliance	DIOPT (Hieranoid\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	celf5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	celf5	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	8,876,551 - 8,901,078 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	8,876,564 - 8,901,069 (+)	Ensembl				GRCr8
mRatBN7.2	7	8,225,787 - 8,250,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,225,825 - 8,250,322 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	11,111,860 - 11,136,274 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	12,987,344 - 13,011,759 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,854,468 - 10,879,038 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,095,449 - 11,119,941 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,095,468 - 11,119,941 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	11,262,391 - 11,287,130 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	9,709,875 - 9,735,811 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	6,416,360 - 6,439,598 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylparaben (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

chrysene (ISO)

cobalt dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

DDE (ISO)

dibenz[a,h]anthracene (ISO)

dorsomorphin (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

Licochalcone B (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

propanal (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

mRNA splice site recognition (IBA)

regulation of alternative mRNA splicing, via spliceosome (IBA,IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA)

nucleus (IBA,IEA)

ribonucleoprotein complex (IBA)

Molecular Function

mRNA binding (IBA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11158314

Genomics

Comparative Map Data

Celf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	8,876,551 - 8,901,078 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	8,876,564 - 8,901,069 (+)	Ensembl				GRCr8
mRatBN7.2	7	8,225,787 - 8,250,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,225,825 - 8,250,322 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	11,111,860 - 11,136,274 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	12,987,344 - 13,011,759 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,854,468 - 10,879,038 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,095,449 - 11,119,941 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,095,468 - 11,119,941 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	11,262,391 - 11,287,130 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	9,709,875 - 9,735,811 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	6,416,360 - 6,439,598 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

CELF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	3,224,661 - 3,297,076 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	3,224,650 - 3,297,076 (+)	Ensembl			hg38	GRCh38
GRCh37	19	3,224,659 - 3,297,074 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,175,701 - 3,248,074 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	3,175,700 - 3,248,071	NCBI
Celera	19	3,161,110 - 3,233,889 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	2,992,255 - 3,064,363 (+)	NCBI		HuRef
CHM1_1	19	3,224,288 - 3,296,678 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	3,199,540 - 3,272,447 (+)	NCBI		T2T-CHM13v2.0

Celf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	81,295,061 - 81,318,564 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	81,295,061 - 81,318,543 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	81,459,227 - 81,482,730 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,459,227 - 81,482,709 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	80,921,973 - 80,945,454 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,865,343 - 80,885,807 (-)	NCBI		MGSCv36	mm8
Celera	10	82,482,165 - 82,506,092 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Celf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,185,126 - 5,214,718 (-)	Ensembl
ChiLan1.0	NW_004955495	5,182,758 - 5,214,724 (-)	NCBI	ChiLan1.0	ChiLan1.0

CELF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	7,620,674 - 7,693,777 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	6,853,922 - 6,928,845 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	2,250,694 - 2,278,961 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	3,230,999 - 3,274,900 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

CELF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	56,027,245 - 56,075,579 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	56,029,575 - 56,075,948 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,751,352 - 55,799,556 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,686,152 - 56,734,387 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,686,738 - 56,734,681 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,741,712 - 55,789,866 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	56,225,332 - 56,273,852 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	56,424,157 - 56,472,338 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Celf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,947,705 - 215,982,648 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,852,126 - 1,887,240 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,864,793 - 1,887,082 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CELF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	75,314,834 - 75,364,103 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	75,314,808 - 75,364,189 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	75,956,800 - 75,987,394 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CELF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	2,988,764 - 3,065,099 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666081	5,518,308 - 5,594,527 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Celf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	5,982,552 - 6,005,839 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	5,980,299 - 6,015,202 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Celf5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	153,406,354 - 153,428,204 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Celf5
122 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	393
Count of miRNA genes:	224
Interacting mature miRNAs:	290
Transcripts:	ENSRNOT00000061219
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
23	10	70	212	81	80	49	152	49	6	436	263	22	189	94	124	31	32	32

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061219 ⟹ ENSRNOP00000057932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	8,876,567 - 8,900,499 (+)	Ensembl
mRatBN7.2 Ensembl	7	8,225,825 - 8,250,322 (+)	Ensembl
Rnor_6.0 Ensembl	7	11,095,468 - 11,119,941 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161972 ⟹ ENSRNOP00000103307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	8,876,564 - 8,901,069 (+)	Ensembl

RefSeq Acc Id:

NM_001135603 ⟹ NP_001129075

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,876,585 - 8,901,078 (+)	NCBI
mRatBN7.2	7	8,225,825 - 8,250,322 (+)	NCBI
Rnor_6.0	7	11,095,468 - 11,119,941 (+)	NCBI
Rnor_5.0	7	11,262,391 - 11,287,130 (+)	NCBI
RGSC_v3.4	7	9,709,875 - 9,735,811 (+)	RGD
Celera	7	6,416,360 - 6,439,598 (+)	RGD

Sequence:

show sequence

CGGCCGCACCACAGCTCCTGCCCGGGCCAGGCCGGTGGGCGGCAGCGGGCCCGAGCGCCCCGGG
GCGCGGCCCGACGGCATGAAGGACCTGGACGCCATCAAGCTCTTCGTGGGCCAAATCCCGCGTC
ATTTGCACGAACAGGACCTCAAGCCGCTATTTGAGCAGTTCGGCCGCATCTACGAGCTCACAGT
GCTCAAAGACCCGCACACCGGCGTGCACAAAGGCTGTGCCTTCCTCACGTACTGCGCCAGGGAC
TCTGCCATCAAAGCTCAGACGGCCTTGCACGAGCAGAAGACCCTGCCAGGGATGGCGCGGCCGA
TCCAGGTGAAACCGGCAGACAGTGAGAACCGTGGAGGTAGGGACCGGAAGCTGTTCGTGGGCAT
GCTCAACAAGCAGCAGTCGGAGGAAGACGTGCTCAGGCTCTTCCAGCCCTTTGGCGTTATAGAC
GAGTGCACAGTGCTGCGAGGACCCGATGGCAGCAGCAAAGGCTGTGCCTTCGTGAAGTTCTCTT
CCCACACAGAGGCCCAGGCTGCCATCCACGCCTTACATGGCAGCCAGACAATGCCGGGAGCTTC
CTCCAGCCTGGTGGTCAAATTCGCCGACACGGACAAAGAGCGGACACTACGGCGTATGCAGCAG
ATGGTTGGCCAGCTGGGCATCCTGACGCCATCCCTCACCCTGCCCTTCAGCCCCTACAGTGCCT
ACGCCCAGGCTCTCATGCAGCAACAGACAACAGTGTTGTCCACCTCTGGCAGCTACCTGAGCCC
CGGTGTGGCCTTCCCTCCCTGCCACATTCAGCAGATTGGCACTGTCAGCCTTAATGGTCTGCCT
GCTACACCCATCGCGCCTGCCTCTGGGCTACACTCACCCCCACTGCTGGGCACTGCCGCCGTCC
CTGGCCTGATGACATCCATTCCCAGTGGCTTCCCAGGTGTTCTGCCCTTTCCCGGGAGCCACCC
TGCCCTGGAGACCGTGTATGCCAATGGCCTTGTGCCCTACCCAGCTCAGAGCCCCACTGTGGCA
GAGACCCTCCATCCTGCCTTCTCTGGAGTCCAGCAGTACACAGCCATGTATCCCACCGCGGCCA
TCGCGCCCGTGGCACACAGCGTTCCGCAGCCTCCGCACCTCCTGCAGCAGCAGCGTGAAGGAGT
TTGGAGACACGGAGCTGACCCAGATGTTCCTCCCCTTCGGCAATATCATCTCCTCCAAGGTGTT
TATGGATCGGGCTACCAACCAGAGCAAGTGTTTCGGATTCGTGAGCTTTGACCACCCAGCCAGC
GCGCAGGCGGCCATCCAGGCCATGAACGGCTTTCAGATTGGTATGAAGAGGCTGAAGGTGCAGC
TGAAGAGACCCAAAGACCCAGGACACCCGTACTGACCACGCCCACAGCCCCTCTGCGCTGTGGG
TGTGGCCCCAGGTGAGCCGCCAGGCGGCCCTGTGCTCCGCCCAGCCCTGGCGTCATTCAACCCT
CCTCCCATCCCAAGCTTACTCTCCAAATCCTGGGGGCGGGAGTGACACTCCAAAAGGCCAACTG
AGGGTTCAAACCCTCCCCCATCACCTGTGGCTTGGGTGGCAGAGAGGGTGGGATTAGGGTGGGG
AAACTAGGGTGAGAGAAAGTTAGGAGGTTCCACACAGGTGACTTCCTTCCCAGGGAAAGTTTTG
AAGGATGAATAGGAGTTCACTTTAGTGAACTGGTTTGGGGCTTGTGGTCTGGGGTGCAGGATGT
GATGGGCGGGGCTTCTATCCCATCCTGTGAAGCTGTTCCCCCAGCCGAGAAGCCCTAATCCAGA
GAAGGACGTGCCGCACACACCCAGCTCTGTGTCCCTACAGTTGAACTTGGAATGCCCAGTTAAG
CATGGCCCAGGACTGAAGCAGAGGAAATGGGGACACATCATAGCCTTGTGGTCCCCCACCTCTG
TCCCCACCAGCTCTCATGGACCCTGAGAGTCCTGTCTTCTAATATCATGCCCAGTGGGTTAACA
AAACCCAGAGTGCCGGTTATAATCTCACAAAACAAACGACACAAAACCAAATACCCAAACAAAC
AAGCAAAAAACCCCCCAAAAGTCAATTTCCCCTTCAACATTCTCAGCACTTTCTTTGGGACTGG
ACTGATTTTAAAAGGTGAACACAACTGCACAATGGCGGCGCCGTGGAGGTGACAGCCCAGCTGT
CCAATAGCAGCGGCTACAGAGCACCCAGGAGTACTTTTTCTTCCTTTTTTTCTTTCTTTCATCA
CCCAGCCCAGGGCCTGGTAGAGATCGACAGTCTTTAATCCTTCGGTGTTTTTTGTCCGTTACCT
GGGTCTTTTGGGCTTTATCTATTTTGGCTTCGATTAGGAAACCCATCAATCACGTAGAAATCCC
CGGACTGCTGCCGTATTTTCACTTTCAACCCAGTGTCCTGCAGGCCATCTGCTCTGGGCTGGTG
AGAGAAGGTCCATGTGAGGAGCAAATGTCCCCAGACTGATGGTGACTGTCAGGAACTGTTGTTT
TGAAAACACTGGGGTTTTCTTGCCAGGACAAAGTGGGGCACTGTGTTCTGCGCCCCGCTCCCCT
TGCTTCTCCTCAATGTCCCCCTATCCTCCCCAGGTTGAGCGGTTCCCGCTTCCAACCGCTCCAG
GACTTTTATGTAAATTACAGCCAAGTTTGGACACCAGCTCTCCCAGTGACCCCCTTCCTCCACC
TGTCCCCGACTTGTGGCCCCCCAAATTCCGAAGCCACCAAAAGCCACTTGAGGTTCAGAAGACT
CCGTGGTGTGTTGTGGGGCAGGGAACAGGAGTCTGAGCCCGGGTTTGAGGGGCCTATACACTGC
CAATAACCACATGCCCCTCAACTTGGGGACACCCCCACGTGACTCAGAGGCTTTCCTGGTCAGC
CAGTATCCCCCTTAGCCAGGTTTCCCCTCCCCCGCCCACTTCCTATTCCCGTAGCTGTGCGTAG
ACATGTGCGCACCATAGACTATATATTTTTGGAGAATGAACCACAGTGGCCAAACTCCGTCAAG
GAGGTGGCTCTGAGCCGGCCAATCAGCGGGGGACCAAGGACAGACCAGCTGAGGCCGGCTGGAC
GCCGCCCTGACTGGACACCAAACCAGGACCCCGCCAACACCATATACCTCCAGTTTTTGGGGTC
TCCACGGTTGCTGCCCCCGCCCTGCCCCTCCCACTTTCATAGCCTTACTTGGGTGACCAGGTGT
CTTTAGCTTCCTGCCAGGGGAGACTCCTGTCCCCCACTGCCCACCCACCCAGATCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACGGTCCTCCAATCACCAGCTGTAAACTGAAGGTCTCATACCC
GAGGTCACCGTGAGTCAGATGTGGCCACACCGGACCCGGTTGCTGACCCCGCAGGCTCCACACT
TTCCTTTTCTACGTATCACCTACCTATCATCTATCTATCATCATGTCGGTGGTCTTTTTCTGAG
TGAGTGCCAACAAGACCACTGAGAAGGGCATAGAGGGAGGGGATGTGGGGACTCATGATAATCC
GCCTTTGATTCCTAGTTGGAGGTTTGGGAAGCCTGGTGAGAGAGCCCACCTCTTGTATATTACC
CAGCCTGCCCACACACCCACCACAAAGCACAGAGTCGTTAATTTGGACATCCCACCAAGCAGGG
GAGGGGGGTCCTGGGGGGGGGTCCAGATCCCTTCCGACTGGTCCAAAAGCAAACAAAAGAGATA
AAAGTTTTTTAAGGTCTAAAAAACATGTAAAAACAAGCAAAAAAAAAAAAAAAACCCTTTTCTT
TTCTACCAAAATGTTTGTTGACTGACCTAAACTAAAGGGGGGTTAAAAAACCAAAAAAAAACCC
ACCCTGATTCTGCCCACCTTGTTTCTCGTCTCCGGTTTGATGATCCCTTGTTCTGAACGTAACA
CAGTAAGACTTACTGTATTACGTAGTGTGCGAACGTGTGTGTCCGGGGTGTCGCTGTGTCCCCC
CACCCCCACGCAAGTTGCCCGCTGAGTGCGTGCTGGCGTGCGCTGGCGTGCGCACTGTCTAGTT
CATGTTTACGAGCTGTAAATACCATTTTTATACTCCACACAAGAGACCCTACGTGATTTGTACA
ACGGGCTTAGTTTCTGCTACGATGAATTTCGTGAAATTTCAAACTTCAATTTTGGAGATGAGCA
GAGGGGGAGCCAAGAGTGGAGAGGGATGTGGGGTTTGAGTCTCGCGCCTCCTATTCGTGAGCGA
GCTTCTCAACATCAAATCACTTCTCCTTGGTCTGGAAAAGAAGAGACAAAAACCCTAAAAGTTT
ATTTAATAAAAGTTTTACTTGTTAACAGGGA

hide sequence

RefSeq Acc Id:

XM_006240942 ⟹ XP_006241004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,876,551 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,225,787 - 8,250,322 (+)	NCBI
Rnor_6.0	7	11,095,449 - 11,119,941 (+)	NCBI
Rnor_5.0	7	11,262,391 - 11,287,130 (+)	NCBI

Sequence:

show sequence

GGCCGCTGACGGAGCGAAGCGGCCGCACCACAGCTCCTGCCCGGGCCAGGCCGGTGGGCGGCAG
CGGGCCCGAGCGCCCCGGGGCGCGGCCCGACGGCATGAAGGACCTGGACGCCATCAAGCTCTTC
GTGGGCCAAATCCCGCGTCATTTGCACGAACAGGACCTCAAGCCGCTATTTGAGCAGTTCGGCC
GCATCTACGAGCTCACAGTGCTCAAAGACCCGCACACCGGCGTGCACAAAGGCTGTGCCTTCCT
CACGTACTGCGCCAGGGACTCTGCCATCAAAGCTCAGACGGCCTTGCACGAGCAGAAGACCCTG
CCAGGGATGGCGCGGCCGATCCAGGTGAAACCGGCAGACAGTGAGAACCGTGGAGGGGACCGGA
AGCTGTTCGTGGGCATGCTCAACAAGCAGCAGTCGGAGGAAGACGTGCTCAGGCTCTTCCAGCC
CTTTGGCGTTATAGACGAGTGCACAGTGCTGCGAGGACCCGATGGCAGCAGCAAAGGCTGTGCC
TTCGTGAAGTTCTCTTCCCACACAGAGGCCCAGGCTGCCATCCACGCCTTACATGGCAGCCAGA
CAATGCCGGGAGCTTCCTCCAGCCTGGTGGTCAAATTCGCCGACACGGACAAAGAGCGGACACT
ACGGCGTATGCAGCAGATGGTTGGCCAGCTGGGCATCCTGACGCCATCCCTCACCCTGCCCTTC
AGCCCCTACAGTGCCTACGCCCAGGCTCTCATGCAGCAACAGACAACAGTGTTGTCCACCTCTG
GCAGCTACCTGAGCCCCGGTGTGGCCTTCCCTCCCTGCCACATTCAGCAGATTGGCACTGTCAG
CCTTAATGGTCTGCCTGCTACACCCATCGCGCCTGCCTCTGGGCTACACTCACCCCCACTGCTG
GGCACTGCCGCCGTCCCTGGCCTGATGACATCCATTCCCAGTGGCTTCCCAGGTGTTCTGCCCT
TTCCCGGGAGCCACCCTGCCCTGGAGACCGTGTATGCCAATGGCCTTGTGCCCTACCCAGCTCA
GAGCCCCACTGTGGCAGAGACCCTCCATCCTGCCTTCTCTGGAGTCCAGCAGTACACAGCCATG
TATCCCACCGCGGCCATCGCGCCCGTGGCACACAGCGTTCCGCAGCCTCCGCACCTCCTGCAGC
AGCAGCGTGAAGGTCCCGAAGGCTGTAACCTGTTTATCTACCACCTCCCCCAGGAGTTTGGAGA
CACGGAGCTGACCCAGATGTTCCTCCCCTTCGGCAATATCATCTCCTCCAAGGTGTTTATGGAT
CGGGCTACCAACCAGAGCAAGTGTTTCGGATTCGTGAGCTTTGACCACCCAGCCAGCGCGCAGG
CGGCCATCCAGGCCATGAACGGCTTTCAGATTGGTATGAAGAGGCTGAAGGTGCAGCTGAAGAG
ACCCAAAGACCCAGGACACCCGTACTGACCACGCCCACAGCCCCTCTGCGCTGTGGGTGTGGCC
CCAGGTGAGCCGCCAGGCGGCCCTGTGCTCCGCCCAGCCCTGGCGTCATTCAACCCTCCTCCCA
TCCCAAGCTTACTCTCCAAATCCTGGGGGCGGGAGTGACACTCCAAAAGGCCAACTGAGGGTTC
AAACCCTCCCCCATCACCTGTGGCTTGGGTGGCAGAGAGGGTGGGATTAGGGTGGGGAAACTAG
GGTGAGAGAAAGTTAGGAGGTTCCACACAGGTGACTTCCTTCCCAGGGAAAGTTTTGAAGGATG
AATAGGAGTTCACTTTAGTGAACTGGTTTGGGGCTTGTGGTCTGGGGTGCAGGATGTGATGGGC
GGGGCTTCTATCCCATCCTGTGAAGCTGTTCCCCCAGCCGAGAAGCCCTAATCCAGAGAAGGAC
GTGCCGCACACACCCAGCTCTGTGTCCCTACAGTTGAACTTGGAATGCCCAGTTAAGCATGGCC
CAGGACTGAAGCAGAGGAAATGGGGACACATCATAGCCTTGTGGTCCCCCACCTCTGTCCCCAC
CAGCTCTCATGGACCCTGAGAGTCCTGTCTTCTAATATCATGCCCAGTGGGTTAACAAAACCCA
GAGTGCCGGTTATAATCTCACAAAACAAACGACACAAAACCAAATACCCAAACAAACAAGCAAA
AAACCCCCCAAAAGTCAATTTCCCCTTCAACATTCTCAGCACTTTCTTTGGGACTGGACTGATT
TTAAAAGGTGAACACAACTGCACAATGGCGGCGCCGTGGAGGTGACAGCCCAGCTGTCCAATAG
CAGCGGCTACAGAGCACCCAGGAGTACTTTTTCTTCCTTTTTTTCTTTCTTTCATCACCCAGCC
CAGGGCCTGGTAGAGATCGACAGTCTTTAATCCTTCGGTGTTTTTTGTCCGTTACCTGGGTCTT
TTGGGCTTTATCTATTTTGGCTTCGATTAGGAAACCCATCAATCACGTAGAAATCCCCGGACTG
CTGCCGTATTTTCACTTTCAACCCAGTGTCCTGCAGGCCATCTGCTCTGGGCTGGTGAGAGAAG
GTCCATGTGAGGAGCAAATGTCCCCAGACTGATGGTGACTGTCAGGAACTGTTGTTTTGAAAAC
ACTGGGGTTTTCTTGCCAGGACAAAGTGGGGCACTGTGTTCTGCGCCCCGCTCCCCTTGCTTCT
CCTCAATGTCCCCCTATCCTCCCCAGGTTGAGCGGTTCCCGCTTCCAACCGCTCCAGGACTTTT
ATGTAAATTACAGCCAAGTTTGGACACCAGCTCTCCCAGTGACCCCCTTCCTCCACCTGTCCCC
GACTTGTGGCCCCCCAAATTCCGAAGCCACCAAAAGCCACTTGAGGTTCAGAAGACTCCGTGGT
GTGTTGTGGGGCAGGGAACAGGAGTCTGAGCCCGGGTTTGAGGGGCCTATACACTGCCAATAAC
CACATGCCCCTCAACTTGGGGACACCCCCACGTGACTCAGAGGCTTTCCTGGTCAGCCAGTATC
CCCCTTAGCCAGGTTTCCCCTCCCCCGCCCACTTCCTATTCCCGTAGCTGTGCGTAGACATGTG
CGCACCATAGACTATATATTTTTGGAGAATGAACCACAGTGGCCAAACTCCGTCAAGGAGGTGG
CTCTGAGCCGGCCAATCAGCGGGGGACCAAGGACAGACCAGCTGAGGCCGGCTGGACGCCGCCC
TGACTGGACACCAAACCAGGACCCCGCCAACACCATATACCTCCAGTTTTTGGGGTCTCCACGG
TTGCTGCCCCCGCCCTGCCCCTCCCACTTTCATAGCCTTACTTGGGTGACCAGGTGTCTTTAGC
TTCCTGCCAGGGGAGACTCCTGTCCCCCACTGCCCACCCACCCAGATCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACGGTCCTCCAATCACCAGCTGTAAACTGAAGGTCTCATACCCGAGGTCA
CCGTGAGTCAGATGTGGCCACACCGGACCCGGTTGCTGACCCCGCAGGCTCCACACTTTCCTTT
TCTACGTATCACCTACCTATCATCTATCTATCATCATGTCGGTGGTCTTTTTCTGAGTGAGTGC
CAACAAGACCACTGAGAAGGGCATAGAGGGAGGGGATGTGGGGACTCATGATAATCCGCCTTTG
ATTCCTAGTTGGAGGTTTGGGAAGCCTGGTGAGAGAGCCCACCTCTTGTATATTACCCAGCCTG
CCCACACACCCACCACAAAGCACAGAGTCGTTAATTTGGACATCCCACCAAGCAGGGGAGGGGG
GTCCTGGGGGGGGGTCCAGATCCCTTCCGACTGGTCCAAAAGCAAACAAAAGAGATAAAAGTTT
TTTAAGGTCTAAAAAACATGTAAAAACAAGCAAAAAAAAAAAAAAAACCCTTTTCTTTTCTACC
AAAATGTTTGTTGACTGACCTAAACTAAAGGGGGGTTAAAAAACCAAAAAAAAACCCACCCTGA
TTCTGCCCACCTTGTTTCTCGTCTCCGGTTTGATGATCCCTTGTTCTGAACGTAACACAGTAAG
ACTTACTGTATTACGTAGTGTGCGAACGTGTGTGTCCGGGGTGTCGCTGTGTCCCCCCACCCCC
ACGCAAGTTGCCCGCTGAGTGCGTGCTGGCGTGCGCTGGCGTGCGCACTGTCTAGTTCATGTTT
ACGAGCTGTAAATACCATTTTTATACTCCACACAAGAGACCCTACGTGATTTGTACAACGGGCT
TAGTTTCTGCTACGATGAATTTCGTGAAATTTCAAACTTCAATTTTGGAGATGAGCAGAGGGGG
AGCCAAGAGTGGAGAGGGATGTGGGGTTTGAGTCTCGCGCCTCCTATTCGTGAGCGAGCTTCTC
AACATCAAATCACTTCTCCTTGGTCTGGAAAAGAAGAGACAAAAACCCTAAAAGTTTATTTAAT
AAAAGTTTTACTTGTTAACAGGGA

hide sequence

RefSeq Acc Id:

XM_008765104 ⟹ XP_008763326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,384 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,236,655 - 8,250,322 (+)	NCBI
Rnor_6.0	7	11,106,303 - 11,119,941 (+)	NCBI

Sequence:

show sequence

ACCCCTCCCCTGCCTCTTCGCCCCACACCCCTCCTAGGCGCCCTGACCCCAGAAGCGGAACTAT
TCGGTTCAGATCGCCTCCCCCAATCCCGGGATGTGGTGTGGTACCCAGATGGCGCGGCCGATCC
AGGTGAAACCGGCAGACAGTGAGAACCGTGGAGGTAGGGACCGGAAGCTGTTCGTGGGCATGCT
CAACAAGCAGCAGTCGGAGGAAGACGTGCTCAGGCTCTTCCAGCCCTTTGGCGTTATAGACGAG
TGCACAGTGCTGCGAGGACCCGATGGCAGCAGCAAAGGCTGTGCCTTCGTGAAGTTCTCTTCCC
ACACAGAGGCCCAGGCTGCCATCCACGCCTTACATGGCAGCCAGACAATGCCGGGAGCTTCCTC
CAGCCTGGTGGTCAAATTCGCCGACACGGACAAAGAGCGGACACTACGGCGTATGCAGCAGATG
GTTGGCCAGCTGGGCATCCTGACGCCATCCCTCACCCTGCCCTTCAGCCCCTACAGTGCCTACG
CCCAGGCTCTCATGCAGCAACAGACAACAGTGTTGTCCACCTCTGGCAGCTACCTGAGCCCCGG
TGTGGCCTTCCCTCCCTGCCACATTCAGCAGATTGGCACTGTCAGCCTTAATGGTCTGCCTGCT
ACACCCATCGCGCCTGCCTCTGGGCTACACTCACCCCCACTGCTGGGCACTGCCGCCGTCCCTG
GCCTGATGACATCCATTCCCAGTGGCTTCCCAGGTGTTCTGCCCTTTCCCGGGAGCCACCCTGC
CCTGGAGACCGTGTATGCCAATGGCCTTGTGCCCTACCCAGCTCAGAGCCCCACTGTGGCAGAG
ACCCTCCATCCTGCCTTCTCTGGAGTCCAGCAGTACACAGCCATGTATCCCACCGCGGCCATCG
CGCCCGTGGCACACAGCGTTCCGCAGCCTCCGCACCTCCTGCAGCAGCAGCGTGAAGGTCCCGA
AGGCTGTAACCTGTTTATCTACCACCTCCCCCAGGAGTTTGGAGACACGGAGCTGACCCAGATG
TTCCTCCCCTTCGGCAATATCATCTCCTCCAAGGTGTTTATGGATCGGGCTACCAACCAGAGCA
AGTGTTTCGGATTCGTGAGCTTTGACCACCCAGCCAGCGCGCAGGCGGCCATCCAGGCCATGAA
CGGCTTTCAGATTGGTATGAAGAGGCTGAAGGTGCAGCTGAAGAGACCCAAAGACCCAGGACAC
CCGTACTGACCACGCCCACAGCCCCTCTGCGCTGTGGGTGTGGCCCCAGGTGAGCCGCCAGGCG
GCCCTGTGCTCCGCCCAGCCCTGGCGTCATTCAACCCTCCTCCCATCCCAAGCTTACTCTCCAA
ATCCTGGGGGCGGGAGTGACACTCCAAAAGGCCAACTGAGGGTTCAAACCCTCCCCCATCACCT
GTGGCTTGGGTGGCAGAGAGGGTGGGATTAGGGTGGGGAAACTAGGGTGAGAGAAAGTTAGGAG
GTTCCACACAGGTGACTTCCTTCCCAGGGAAAGTTTTGAAGGATGAATAGGAGTTCACTTTAGT
GAACTGGTTTGGGGCTTGTGGTCTGGGGTGCAGGATGTGATGGGCGGGGCTTCTATCCCATCCT
GTGAAGCTGTTCCCCCAGCCGAGAAGCCCTAATCCAGAGAAGGACGTGCCGCACACACCCAGCT
CTGTGTCCCTACAGTTGAACTTGGAATGCCCAGTTAAGCATGGCCCAGGACTGAAGCAGAGGAA
ATGGGGACACATCATAGCCTTGTGGTCCCCCACCTCTGTCCCCACCAGCTCTCATGGACCCTGA
GAGTCCTGTCTTCTAATATCATGCCCAGTGGGTTAACAAAACCCAGAGTGCCGGTTATAATCTC
ACAAAACAAACGACACAAAACCAAATACCCAAACAAACAAGCAAAAAACCCCCCAAAAGTCAAT
TTCCCCTTCAACATTCTCAGCACTTTCTTTGGGACTGGACTGATTTTAAAAGGTGAACACAACT
GCACAATGGCGGCGCCGTGGAGGTGACAGCCCAGCTGTCCAATAGCAGCGGCTACAGAGCACCC
AGGAGTACTTTTTCTTCCTTTTTTTCTTTCTTTCATCACCCAGCCCAGGGCCTGGTAGAGATCG
ACAGTCTTTAATCCTTCGGTGTTTTTTGTCCGTTACCTGGGTCTTTTGGGCTTTATCTATTTTG
GCTTCGATTAGGAAACCCATCAATCACGTAGAAATCCCCGGACTGCTGCCGTATTTTCACTTTC
AACCCAGTGTCCTGCAGGCCATCTGCTCTGGGCTGGTGAGAGAAGGTCCATGTGAGGAGCAAAT
GTCCCCAGACTGATGGTGACTGTCAGGAACTGTTGTTTTGAAAACACTGGGGTTTTCTTGCCAG
GACAAAGTGGGGCACTGTGTTCTGCGCCCCGCTCCCCTTGCTTCTCCTCAATGTCCCCCTATCC
TCCCCAGGTTGAGCGGTTCCCGCTTCCAACCGCTCCAGGACTTTTATGTAAATTACAGCCAAGT
TTGGACACCAGCTCTCCCAGTGACCCCCTTCCTCCACCTGTCCCCGACTTGTGGCCCCCCAAAT
TCCGAAGCCACCAAAAGCCACTTGAGGTTCAGAAGACTCCGTGGTGTGTTGTGGGGCAGGGAAC
AGGAGTCTGAGCCCGGGTTTGAGGGGCCTATACACTGCCAATAACCACATGCCCCTCAACTTGG
GGACACCCCCACGTGACTCAGAGGCTTTCCTGGTCAGCCAGTATCCCCCTTAGCCAGGTTTCCC
CTCCCCCGCCCACTTCCTATTCCCGTAGCTGTGCGTAGACATGTGCGCACCATAGACTATATAT
TTTTGGAGAATGAACCACAGTGGCCAAACTCCGTCAAGGAGGTGGCTCTGAGCCGGCCAATCAG
CGGGGGACCAAGGACAGACCAGCTGAGGCCGGCTGGACGCCGCCCTGACTGGACACCAAACCAG
GACCCCGCCAACACCATATACCTCCAGTTTTTGGGGTCTCCACGGTTGCTGCCCCCGCCCTGCC
CCTCCCACTTTCATAGCCTTACTTGGGTGACCAGGTGTCTTTAGCTTCCTGCCAGGGGAGACTC
CTGTCCCCCACTGCCCACCCACCCAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGT
CCTCCAATCACCAGCTGTAAACTGAAGGTCTCATACCCGAGGTCACCGTGAGTCAGATGTGGCC
ACACCGGACCCGGTTGCTGACCCCGCAGGCTCCACACTTTCCTTTTCTACGTATCACCTACCTA
TCATCTATCTATCATCATGTCGGTGGTCTTTTTCTGAGTGAGTGCCAACAAGACCACTGAGAAG
GGCATAGAGGGAGGGGATGTGGGGACTCATGATAATCCGCCTTTGATTCCTAGTTGGAGGTTTG
GGAAGCCTGGTGAGAGAGCCCACCTCTTGTATATTACCCAGCCTGCCCACACACCCACCACAAA
GCACAGAGTCGTTAATTTGGACATCCCACCAAGCAGGGGAGGGGGGTCCTGGGGGGGGGTCCAG
ATCCCTTCCGACTGGTCCAAAAGCAAACAAAAGAGATAAAAGTTTTTTAAGGTCTAAAAAACAT
GTAAAAACAAGCAAAAAAAAAAAAAAAACCCTTTTCTTTTCTACCAAAATGTTTGTTGACTGAC
CTAAACTAAAGGGGGGTTAAAAAACCAAAAAAAAACCCACCCTGATTCTGCCCACCTTGTTTCT
CGTCTCCGGTTTGATGATCCCTTGTTCTGAACGTAACACAGTAAGACTTACTGTATTACGTAGT
GTGCGAACGTGTGTGTCCGGGGTGTCGCTGTGTCCCCCCACCCCCACGCAAGTTGCCCGCTGAG
TGCGTGCTGGCGTGCGCTGGCGTGCGCACTGTCTAGTTCATGTTTACGAGCTGTAAATACCATT
TTTATACTCCACACAAGAGACCCTACGTGATTTGTACAACGGGCTTAGTTTCTGCTACGATGAA
TTTCGTGAAATTTCAAACTTCAATTTTGGAGATGAGCAGAGGGGGAGCCAAGAGTGGAGAGGGA
TGTGGGGTTTGAGTCTCGCGCCTCCTATTCGTGAGCGAGCTTCTCAACATCAAATCACTTCTCC
TTGGTCTGGAAAAGAAGAGACAAAAACCCTAAAAGTTTATTTAATAAAAGTTTTACTTGTTAAC
AGGGA

hide sequence

RefSeq Acc Id:

XM_008765105 ⟹ XP_008763327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,877,144 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,226,391 - 8,250,322 (+)	NCBI
Rnor_6.0	7	11,096,080 - 11,119,941 (+)	NCBI

Sequence:

show sequence

GGCATCTACCTCTCTTTTCCCCTCTCCCTCCCATTCCCATTCCCAGACCCCTCCTAACCTGTGC
CTAGAGCGCCAGAGACCCCAGCCTCCCAGCCCCCACCACCCTTCTTGTTGCTTTTGGTCTTCCT
GGCCCAGCTTGGAACTTCCCACCTCGGGATTGGGAATCCTGCTCACAAAGCCGGGCTAGCTCGG
GCTGCAGCCAGGACACATGTCCAGGACCCGAGTCTGAGCGGCTGTGCCTTCCTCACGTACTGCG
CCAGGGACTCTGCCATCAAAGCTCAGACGGCCTTGCACGAGCAGAAGACCCTGCCAGGGATGGC
GCGGCCGATCCAGGTGAAACCGGCAGACAGTGAGAACCGTGGAGGTAGGGACCGGAAGCTGTTC
GTGGGCATGCTCAACAAGCAGCAGTCGGAGGAAGACGTGCTCAGGCTCTTCCAGCCCTTTGGCG
TTATAGACGAGTGCACAGTGCTGCGAGGACCCGATGGCAGCAGCAAAGGCTGTGCCTTCGTGAA
GTTCTCTTCCCACACAGAGGCCCAGGCTGCCATCCACGCCTTACATGGCAGCCAGACAATGCCG
GGAGCTTCCTCCAGCCTGGTGGTCAAATTCGCCGACACGGACAAAGAGCGGACACTACGGCGTA
TGCAGCAGATGGTTGGCCAGCTGGGCATCCTGACGCCATCCCTCACCCTGCCCTTCAGCCCCTA
CAGTGCCTACGCCCAGGCTCTCATGCAGCAACAGACAACAGTGTTGTCCACCTCTGGCAGCTAC
CTGAGCCCCGGTGTGGCCTTCCCTCCCTGCCACATTCAGCAGATTGGCACTGTCAGCCTTAATG
GTCTGCCTGCTACACCCATCGCGCCTGCCTCTGGGCTACACTCACCCCCACTGCTGGGCACTGC
CGCCGTCCCTGGCCTGATGACATCCATTCCCAGTGGCTTCCCAGGTGTTCTGCCCTTTCCCGGG
AGCCACCCTGCCCTGGAGACCGTGTATGCCAATGGCCTTGTGCCCTACCCAGCTCAGAGCCCCA
CTGTGGCAGAGACCCTCCATCCTGCCTTCTCTGGAGTCCAGCAGTACACAGCCATGTATCCCAC
CGCGGCCATCGCGCCCGTGGCACACAGCGTTCCGCAGCCTCCGCACCTCCTGCAGCAGCAGCGT
GAAGGTCCCGAAGGCTGTAACCTGTTTATCTACCACCTCCCCCAGGAGTTTGGAGACACGGAGC
TGACCCAGATGTTCCTCCCCTTCGGCAATATCATCTCCTCCAAGGTGTTTATGGATCGGGCTAC
CAACCAGAGCAAGTGTTTCGGATTCGTGAGCTTTGACCACCCAGCCAGCGCGCAGGCGGCCATC
CAGGCCATGAACGGCTTTCAGATTGGTATGAAGAGGCTGAAGGTGCAGCTGAAGAGACCCAAAG
ACCCAGGACACCCGTACTGACCACGCCCACAGCCCCTCTGCGCTGTGGGTGTGGCCCCAGGTGA
GCCGCCAGGCGGCCCTGTGCTCCGCCCAGCCCTGGCGTCATTCAACCCTCCTCCCATCCCAAGC
TTACTCTCCAAATCCTGGGGGCGGGAGTGACACTCCAAAAGGCCAACTGAGGGTTCAAACCCTC
CCCCATCACCTGTGGCTTGGGTGGCAGAGAGGGTGGGATTAGGGTGGGGAAACTAGGGTGAGAG
AAAGTTAGGAGGTTCCACACAGGTGACTTCCTTCCCAGGGAAAGTTTTGAAGGATGAATAGGAG
TTCACTTTAGTGAACTGGTTTGGGGCTTGTGGTCTGGGGTGCAGGATGTGATGGGCGGGGCTTC
TATCCCATCCTGTGAAGCTGTTCCCCCAGCCGAGAAGCCCTAATCCAGAGAAGGACGTGCCGCA
CACACCCAGCTCTGTGTCCCTACAGTTGAACTTGGAATGCCCAGTTAAGCATGGCCCAGGACTG
AAGCAGAGGAAATGGGGACACATCATAGCCTTGTGGTCCCCCACCTCTGTCCCCACCAGCTCTC
ATGGACCCTGAGAGTCCTGTCTTCTAATATCATGCCCAGTGGGTTAACAAAACCCAGAGTGCCG
GTTATAATCTCACAAAACAAACGACACAAAACCAAATACCCAAACAAACAAGCAAAAAACCCCC
CAAAAGTCAATTTCCCCTTCAACATTCTCAGCACTTTCTTTGGGACTGGACTGATTTTAAAAGG
TGAACACAACTGCACAATGGCGGCGCCGTGGAGGTGACAGCCCAGCTGTCCAATAGCAGCGGCT
ACAGAGCACCCAGGAGTACTTTTTCTTCCTTTTTTTCTTTCTTTCATCACCCAGCCCAGGGCCT
GGTAGAGATCGACAGTCTTTAATCCTTCGGTGTTTTTTGTCCGTTACCTGGGTCTTTTGGGCTT
TATCTATTTTGGCTTCGATTAGGAAACCCATCAATCACGTAGAAATCCCCGGACTGCTGCCGTA
TTTTCACTTTCAACCCAGTGTCCTGCAGGCCATCTGCTCTGGGCTGGTGAGAGAAGGTCCATGT
GAGGAGCAAATGTCCCCAGACTGATGGTGACTGTCAGGAACTGTTGTTTTGAAAACACTGGGGT
TTTCTTGCCAGGACAAAGTGGGGCACTGTGTTCTGCGCCCCGCTCCCCTTGCTTCTCCTCAATG
TCCCCCTATCCTCCCCAGGTTGAGCGGTTCCCGCTTCCAACCGCTCCAGGACTTTTATGTAAAT
TACAGCCAAGTTTGGACACCAGCTCTCCCAGTGACCCCCTTCCTCCACCTGTCCCCGACTTGTG
GCCCCCCAAATTCCGAAGCCACCAAAAGCCACTTGAGGTTCAGAAGACTCCGTGGTGTGTTGTG
GGGCAGGGAACAGGAGTCTGAGCCCGGGTTTGAGGGGCCTATACACTGCCAATAACCACATGCC
CCTCAACTTGGGGACACCCCCACGTGACTCAGAGGCTTTCCTGGTCAGCCAGTATCCCCCTTAG
CCAGGTTTCCCCTCCCCCGCCCACTTCCTATTCCCGTAGCTGTGCGTAGACATGTGCGCACCAT
AGACTATATATTTTTGGAGAATGAACCACAGTGGCCAAACTCCGTCAAGGAGGTGGCTCTGAGC
CGGCCAATCAGCGGGGGACCAAGGACAGACCAGCTGAGGCCGGCTGGACGCCGCCCTGACTGGA
CACCAAACCAGGACCCCGCCAACACCATATACCTCCAGTTTTTGGGGTCTCCACGGTTGCTGCC
CCCGCCCTGCCCCTCCCACTTTCATAGCCTTACTTGGGTGACCAGGTGTCTTTAGCTTCCTGCC
AGGGGAGACTCCTGTCCCCCACTGCCCACCCACCCAGATCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACGGTCCTCCAATCACCAGCTGTAAACTGAAGGTCTCATACCCGAGGTCACCGTGAGT
CAGATGTGGCCACACCGGACCCGGTTGCTGACCCCGCAGGCTCCACACTTTCCTTTTCTACGTA
TCACCTACCTATCATCTATCTATCATCATGTCGGTGGTCTTTTTCTGAGTGAGTGCCAACAAGA
CCACTGAGAAGGGCATAGAGGGAGGGGATGTGGGGACTCATGATAATCCGCCTTTGATTCCTAG
TTGGAGGTTTGGGAAGCCTGGTGAGAGAGCCCACCTCTTGTATATTACCCAGCCTGCCCACACA
CCCACCACAAAGCACAGAGTCGTTAATTTGGACATCCCACCAAGCAGGGGAGGGGGGTCCTGGG
GGGGGGTCCAGATCCCTTCCGACTGGTCCAAAAGCAAACAAAAGAGATAAAAGTTTTTTAAGGT
CTAAAAAACATGTAAAAACAAGCAAAAAAAAAAAAAAAACCCTTTTCTTTTCTACCAAAATGTT
TGTTGACTGACCTAAACTAAAGGGGGGTTAAAAAACCAAAAAAAAACCCACCCTGATTCTGCCC
ACCTTGTTTCTCGTCTCCGGTTTGATGATCCCTTGTTCTGAACGTAACACAGTAAGACTTACTG
TATTACGTAGTGTGCGAACGTGTGTGTCCGGGGTGTCGCTGTGTCCCCCCACCCCCACGCAAGT
TGCCCGCTGAGTGCGTGCTGGCGTGCGCTGGCGTGCGCACTGTCTAGTTCATGTTTACGAGCTG
TAAATACCATTTTTATACTCCACACAAGAGACCCTACGTGATTTGTACAACGGGCTTAGTTTCT
GCTACGATGAATTTCGTGAAATTTCAAACTTCAATTTTGGAGATGAGCAGAGGGGGAGCCAAGA
GTGGAGAGGGATGTGGGGTTTGAGTCTCGCGCCTCCTATTCGTGAGCGAGCTTCTCAACATCAA
ATCACTTCTCCTTGGTCTGGAAAAGAAGAGACAAAAACCCTAAAAGTTTATTTAATAAAAGTTT
TACTTGTTAACAGGGA

hide sequence

RefSeq Acc Id:

XM_017594819 ⟹ XP_017450308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,876,552 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,225,787 - 8,250,322 (+)	NCBI
Rnor_6.0	7	11,095,449 - 11,119,941 (+)	NCBI

Sequence:

show sequence

GGCCGCTGACGGAGCGAAGCGGCCGCACCACAGCTCCTGCCCGGGCCAGGCCGGTGGGCGGCAG
CGGGCCCGAGCGCCCCGGGGCGCGGCCCGACGGCATGAAGGACCTGGACGCCATCAAGCTCTTC
GTGGGCCAAATCCCGCGTCATTTGCACGAACAGGACCTCAAGCCGCTATTTGAGCAGTTCGGCC
GCATCTACGAGCTCACAGTGCTCAAAGACCCGCACACCGGCGTGCACAAAGGCTGTGCCTTCCT
CACGTACTGCGCCAGGGACTCTGCCATCAAAGCTCAGACGGCCTTGCACGAGCAGAAGACCCTG
CCAGGGATGGCGCGGCCGATCCAGGTGAAACCGGCAGACAGTGAGAACCGTGGAGGGGACCGGA
AGCTGTTCGTGGGCATGCTCAACAAGCAGCAGTCGGAGGAAGACGTGCTCAGGCTCTTCCAGCC
CTTTGGCGTTATAGACGAGTGCACAGTGCTGCGAGGACCCGATGGCAGCAGCAAAGGCTGTGCC
TTCGTGAAGTTCTCTTCCCACACAGAGGCCCAGGCTGCCATCCACGCCTTACATGGCAGCCAGA
CAATGCCGGGAGCTTCCTCCAGCCTGGTGGTCAAATTCGCCGACACGGACAAAGAGCGGACACT
ACGGCGTATGCAGCAGATGGTTGGCCAGCTGGGCATCCTGACGCCATCCCTCACCCTGCCCTTC
AGCCCCTACAGTGCCTACGCCCAGGCTCTCATGCAGCAACAGACAACAGTGTTGTCCACCTCTG
GCAGCTACCTGAGCCCCGGTGTGGCCTTCCCTCCCTGCCACATTCAGCAGATTGGCACTGTCAG
CCTTAATGGTCTGCCTGCTACACCCATCGCGCCTGCCTCTGGGCTACACTCACCCCCACTGCTG
GGCACTGCCGCCGTCCCTGGCCTGATGACATCCATTCCCAGTGGCTTCCCAGGTGTTCTGCCCT
TTCCCGGGAGCCACCCTGCCCTGGAGACCGTGTATGCCAATGGCCTTGTGCCCTACCCAGCTCA
GAGCCCCACTGTGGCAGAGACCCTCCATCCTGCCTTCTCTGGAGTCCAGCAGTACACAGCCATG
TATCCCACCGCGGCCATCGCGCCCGTGGCACACAGCGTTCCGCAGCCTCCGCACCTCCTGCAGC
AGCAGCGTGAAGGAGTTTGGAGACACGGAGCTGACCCAGATGTTCCTCCCCTTCGGCAATATCA
TCTCCTCCAAGGTGTTTATGGATCGGGCTACCAACCAGAGCAAGTGTTTCGGATTCGTGAGCTT
TGACCACCCAGCCAGCGCGCAGGCGGCCATCCAGGCCATGAACGGCTTTCAGATTGGTATGAAG
AGGCTGAAGGTGCAGCTGAAGAGACCCAAAGACCCAGGACACCCGTACTGACCACGCCCACAGC
CCCTCTGCGCTGTGGGTGTGGCCCCAGGTGAGCCGCCAGGCGGCCCTGTGCTCCGCCCAGCCCT
GGCGTCATTCAACCCTCCTCCCATCCCAAGCTTACTCTCCAAATCCTGGGGGCGGGAGTGACAC
TCCAAAAGGCCAACTGAGGGTTCAAACCCTCCCCCATCACCTGTGGCTTGGGTGGCAGAGAGGG
TGGGATTAGGGTGGGGAAACTAGGGTGAGAGAAAGTTAGGAGGTTCCACACAGGTGACTTCCTT
CCCAGGGAAAGTTTTGAAGGATGAATAGGAGTTCACTTTAGTGAACTGGTTTGGGGCTTGTGGT
CTGGGGTGCAGGATGTGATGGGCGGGGCTTCTATCCCATCCTGTGAAGCTGTTCCCCCAGCCGA
GAAGCCCTAATCCAGAGAAGGACGTGCCGCACACACCCAGCTCTGTGTCCCTACAGTTGAACTT
GGAATGCCCAGTTAAGCATGGCCCAGGACTGAAGCAGAGGAAATGGGGACACATCATAGCCTTG
TGGTCCCCCACCTCTGTCCCCACCAGCTCTCATGGACCCTGAGAGTCCTGTCTTCTAATATCAT
GCCCAGTGGGTTAACAAAACCCAGAGTGCCGGTTATAATCTCACAAAACAAACGACACAAAACC
AAATACCCAAACAAACAAGCAAAAAACCCCCCAAAAGTCAATTTCCCCTTCAACATTCTCAGCA
CTTTCTTTGGGACTGGACTGATTTTAAAAGGTGAACACAACTGCACAATGGCGGCGCCGTGGAG
GTGACAGCCCAGCTGTCCAATAGCAGCGGCTACAGAGCACCCAGGAGTACTTTTTCTTCCTTTT
TTTCTTTCTTTCATCACCCAGCCCAGGGCCTGGTAGAGATCGACAGTCTTTAATCCTTCGGTGT
TTTTTGTCCGTTACCTGGGTCTTTTGGGCTTTATCTATTTTGGCTTCGATTAGGAAACCCATCA
ATCACGTAGAAATCCCCGGACTGCTGCCGTATTTTCACTTTCAACCCAGTGTCCTGCAGGCCAT
CTGCTCTGGGCTGGTGAGAGAAGGTCCATGTGAGGAGCAAATGTCCCCAGACTGATGGTGACTG
TCAGGAACTGTTGTTTTGAAAACACTGGGGTTTTCTTGCCAGGACAAAGTGGGGCACTGTGTTC
TGCGCCCCGCTCCCCTTGCTTCTCCTCAATGTCCCCCTATCCTCCCCAGGTTGAGCGGTTCCCG
CTTCCAACCGCTCCAGGACTTTTATGTAAATTACAGCCAAGTTTGGACACCAGCTCTCCCAGTG
ACCCCCTTCCTCCACCTGTCCCCGACTTGTGGCCCCCCAAATTCCGAAGCCACCAAAAGCCACT
TGAGGTTCAGAAGACTCCGTGGTGTGTTGTGGGGCAGGGAACAGGAGTCTGAGCCCGGGTTTGA
GGGGCCTATACACTGCCAATAACCACATGCCCCTCAACTTGGGGACACCCCCACGTGACTCAGA
GGCTTTCCTGGTCAGCCAGTATCCCCCTTAGCCAGGTTTCCCCTCCCCCGCCCACTTCCTATTC
CCGTAGCTGTGCGTAGACATGTGCGCACCATAGACTATATATTTTTGGAGAATGAACCACAGTG
GCCAAACTCCGTCAAGGAGGTGGCTCTGAGCCGGCCAATCAGCGGGGGACCAAGGACAGACCAG
CTGAGGCCGGCTGGACGCCGCCCTGACTGGACACCAAACCAGGACCCCGCCAACACCATATACC
TCCAGTTTTTGGGGTCTCCACGGTTGCTGCCCCCGCCCTGCCCCTCCCACTTTCATAGCCTTAC
TTGGGTGACCAGGTGTCTTTAGCTTCCTGCCAGGGGAGACTCCTGTCCCCCACTGCCCACCCAC
CCAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACGGTCCTCCAATCACCAGCTGTAAAC
TGAAGGTCTCATACCCGAGGTCACCGTGAGTCAGATGTGGCCACACCGGACCCGGTTGCTGACC
CCGCAGGCTCCACACTTTCCTTTTCTACGTATCACCTACCTATCATCTATCTATCATCATGTCG
GTGGTCTTTTTCTGAGTGAGTGCCAACAAGACCACTGAGAAGGGCATAGAGGGAGGGGATGTGG
GGACTCATGATAATCCGCCTTTGATTCCTAGTTGGAGGTTTGGGAAGCCTGGTGAGAGAGCCCA
CCTCTTGTATATTACCCAGCCTGCCCACACACCCACCACAAAGCACAGAGTCGTTAATTTGGAC
ATCCCACCAAGCAGGGGAGGGGGGTCCTGGGGGGGGGTCCAGATCCCTTCCGACTGGTCCAAAA
GCAAACAAAAGAGATAAAAGTTTTTTAAGGTCTAAAAAACATGTAAAAACAAGCAAAAAAAAAA
AAAAAACCCTTTTCTTTTCTACCAAAATGTTTGTTGACTGACCTAAACTAAAGGGGGGTTAAAA
AACCAAAAAAAAACCCACCCTGATTCTGCCCACCTTGTTTCTCGTCTCCGGTTTGATGATCCCT
TGTTCTGAACGTAACACAGTAAGACTTACTGTATTACGTAGTGTGCGAACGTGTGTGTCCGGGG
TGTCGCTGTGTCCCCCCACCCCCACGCAAGTTGCCCGCTGAGTGCGTGCTGGCGTGCGCTGGCG
TGCGCACTGTCTAGTTCATGTTTACGAGCTGTAAATACCATTTTTATACTCCACACAAGAGACC
CTACGTGATTTGTACAACGGGCTTAGTTTCTGCTACGATGAATTTCGTGAAATTTCAAACTTCA
ATTTTGGAGATGAGCAGAGGGGGAGCCAAGAGTGGAGAGGGATGTGGGGTTTGAGTCTCGCGCC
TCCTATTCGTGAGCGAGCTTCTCAACATCAAATCACTTCTCCTTGGTCTGGAAAAGAAGAGACA
AAAACCCTAAAAGTTTATTTAATAAAAGTTTTACTTGTTAACAGGGA

hide sequence

RefSeq Acc Id:

XM_039079023 ⟹ XP_038934951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,876,552 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,225,787 - 8,250,322 (+)	NCBI

RefSeq Acc Id:

XM_039079024 ⟹ XP_038934952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,024 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,236,255 - 8,250,322 (+)	NCBI

RefSeq Acc Id:

XM_039079025 ⟹ XP_038934953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,024 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,236,255 - 8,250,322 (+)	NCBI

RefSeq Acc Id:

XM_039079026 ⟹ XP_038934954

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,024 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,236,255 - 8,250,322 (+)	NCBI

RefSeq Acc Id:

XM_039079027 ⟹ XP_038934955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,413 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,236,655 - 8,250,322 (+)	NCBI

RefSeq Acc Id:

XM_039079028 ⟹ XP_038934956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,413 - 8,901,072 (+)	NCBI
mRatBN7.2	7	8,236,655 - 8,250,322 (+)	NCBI

RefSeq Acc Id:

XM_063263430 ⟹ XP_063119500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,887,346 - 8,901,072 (+)	NCBI

RefSeq Acc Id:

XM_063263431 ⟹ XP_063119501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,877,145 - 8,901,072 (+)	NCBI

RefSeq Acc Id:

XM_063263432 ⟹ XP_063119502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,884,399 - 8,901,072 (+)	NCBI

RefSeq Acc Id:

XM_063263433 ⟹ XP_063119503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	8,877,144 - 8,901,072 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129075	(Get FASTA)	NCBI Sequence Viewer
	XP_006241004	(Get FASTA)	NCBI Sequence Viewer
	XP_008763326	(Get FASTA)	NCBI Sequence Viewer
	XP_008763327	(Get FASTA)	NCBI Sequence Viewer
	XP_017450308	(Get FASTA)	NCBI Sequence Viewer
	XP_038934951	(Get FASTA)	NCBI Sequence Viewer
	XP_038934952	(Get FASTA)	NCBI Sequence Viewer
	XP_038934953	(Get FASTA)	NCBI Sequence Viewer
	XP_038934954	(Get FASTA)	NCBI Sequence Viewer
	XP_038934955	(Get FASTA)	NCBI Sequence Viewer
	XP_038934956	(Get FASTA)	NCBI Sequence Viewer
	XP_063119500	(Get FASTA)	NCBI Sequence Viewer
	XP_063119501	(Get FASTA)	NCBI Sequence Viewer
	XP_063119502	(Get FASTA)	NCBI Sequence Viewer
	XP_063119503	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89147	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057932
	ENSRNOP00000057932.3
	ENSRNOP00000103307
	ENSRNOP00000103307.1

RefSeq Acc Id:

NP_001129075 ⟸ NM_001135603

- Sequence:

show sequence

MKDLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKA
QTALHEQKTLPGMARPIQVKPADSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL
RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL
GILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIA
PASGLHSPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHP
AFSGVQQYTAMYPTAAIAPVAHSVPQPPHLLQQQREGVWRHGADPDVPPLRQYHLLQGVYGSGY
QPEQVFRIREL

hide sequence

RefSeq Acc Id:

XP_006241004 ⟸ XM_006240942

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKDLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKA
QTALHEQKTLPGMARPIQVKPADSENRGGDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR
GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLG
ILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIAP
ASGLHSPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHPA
FSGVQQYTAMYPTAAIAPVAHSVPQPPHLLQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFG
NIISSKVFMDRATNQSKCFGFVSFDHPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY

hide sequence

RefSeq Acc Id:

XP_008763327 ⟸ XM_008765105

- Peptide Label:

isoform X8

- Sequence:

show sequence

MARPIQVKPADSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAF
VKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFS
PYSAYAQALMQQQTTVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIAPASGLHSPPLLG
TAAVPGLMTSIPSGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMY
PTAAIAPVAHSVPQPPHLLQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDR
ATNQSKCFGFVSFDHPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY

hide sequence

RefSeq Acc Id:

XP_008763326 ⟸ XM_008765104

- Peptide Label:

isoform X6

- Sequence:

show sequence

MWCGTQMARPIQVKPADSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS
SKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPS
LTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIAPASGLH
SPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQ
QYTAMYPTAAIAPVAHSVPQPPHLLQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS
KVFMDRATNQSKCFGFVSFDHPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY

hide sequence

RefSeq Acc Id:

XP_017450308 ⟸ XM_017594819

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKDLDAIKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKA
QTALHEQKTLPGMARPIQVKPADSENRGGDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR
GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLG
ILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIAP
ASGLHSPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHPALETVYANGLVPYPAQSPTVAETLHPA
FSGVQQYTAMYPTAAIAPVAHSVPQPPHLLQQQREGVWRHGADPDVPPLRQYHLLQGVYGSGYQ
PEQVFRIREL

hide sequence

Ensembl Acc Id:

ENSRNOP00000057932 ⟸ ENSRNOT00000061219

RefSeq Acc Id:	XP_038934951 ⟸ XM_039079023
- Peptide Label:	isoform X1
- UniProtKB:	D4A8V0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934952 ⟸ XM_039079024
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038934953 ⟸ XM_039079025
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038934954 ⟸ XM_039079026
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038934955 ⟸ XM_039079027
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038934956 ⟸ XM_039079028
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063119503 ⟸ XM_063263433
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063119501 ⟸ XM_063263431
- Peptide Label:	isoform X12
- UniProtKB:	A6K877 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119502 ⟸ XM_063263432
- Peptide Label:	isoform X12
- UniProtKB:	A6K877 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119500 ⟸ XM_063263430
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000103307 ⟸ ENSRNOT00000161972

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A8V0-F1-model_v2	AlphaFold	D4A8V0	1-395	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565016	AgrOrtholog
BioCyc Gene	G2FUF-35035	BioCyc
Ensembl Genes	ENSRNOG00000004695	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061219	ENTREZGENE
	ENSRNOT00000061219.4	UniProtKB/TrEMBL
	ENSRNOT00000161972	ENTREZGENE
	ENSRNOT00000161972.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	CELF3/4/5/6_RRM1	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_RNP1	UniProtKB/TrEMBL
NCBI Gene	314647	ENTREZGENE
PANTHER	RNA BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Celf5	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004695	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0ABK0LEY3_RAT	UniProtKB/TrEMBL
	A6K877	ENTREZGENE, UniProtKB/TrEMBL
	D4A8V0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Celf5	CUGBP, Elav-like family member 5	Brunol5	bruno-like 5, RNA binding protein (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Brunol5	bruno-like 5, RNA binding protein (Drosophila)	RGD1565016_predicted	similar to bruno-like 5, RNA binding protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565016_predicted	similar to bruno-like 5, RNA binding protein (predicted)	LOC314647	similar to bruno-like 5, RNA binding protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC314647	similar to bruno-like 5, RNA binding protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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