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Gene: Retreg1 (reticulophagy regulator 1) Rattus norvegicus

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Symbol:

Retreg1 (Ensembl: Zfp622l1)

Name:

reticulophagy regulator 1 (Ensembl:zinc finger protein 622 like 1)

RGD ID:

1565003

Description:

Predicted to enable endoplasmic reticulum-autophagosome adaptor activity. Predicted to be involved in negative regulation of neuron apoptotic process; reticulophagy; and sensory perception of pain. Predicted to act upstream of or within several processes, including collagen catabolic process; mitophagy; and white fat cell differentiation. Predicted to be located in cis-Golgi network and endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 2B. Orthologous to human RETREG1 (reticulophagy regulator 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Fam134b; family with sequence similarity 134, member B; hypothetical protein LOC619558; LOC103689968; LOC619558; protein FAM134B; reticulophagy receptor 1; reticulophagy receptor FAM134B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RETREG1 (reticulophagy regulator 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther
Mus musculus (house mouse):	Retreg1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Retreg1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RETREG1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RETREG1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Retreg1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RETREG1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RETREG1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Retreg1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Retreg1 (reticulophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF622 (zinc finger protein 622)	HGNC	Ensembl, OrthoDB
Alliance orthologs ³
Homo sapiens (human):	RETREG1 (reticulophagy regulator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Retreg1 (reticulophagy regulator 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	retreg1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	retreg1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	78,045,435 - 78,205,316 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	78,066,031 - 78,225,356 (+)	Ensembl				GRCr8
mRatBN7.2	2	76,335,609 - 76,474,817 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	76,335,609 - 76,493,898 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	83,455,839 - 83,595,059 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	81,577,567 - 81,716,777 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	76,582,768 - 76,722,071 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	78,391,921 - 78,401,569 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	78,391,921 - 78,399,987 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	2	78,103,387 - 78,276,927 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	97,821,407 - 97,972,821 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	77,470,558 - 77,566,123 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	72,093,456 - 72,182,485 (+)	NCBI		Celera
Cytogenetic Map	2	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease (ISO)

genetic disease (ISO)

hereditary sensory and autonomic neuropathy type 2 (ISO)

hereditary sensory and autonomic neuropathy type 2A (ISO)

hereditary sensory and autonomic neuropathy type 2B (ISO)

hereditary sensory neuropathy (ISO)

Vesicoureteral Reflux 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (EXP)

aldrin (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chloroethene (ISO)

chlorogenic acid (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

D-glucose (EXP)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diethyl phthalate (EXP)

diquat (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

fenthion (ISO)

furan (EXP)

gentamycin (EXP)

glafenine (EXP)

glucose (EXP)

glutathione (EXP)

indometacin (ISO)

inulin (ISO)

iron dichloride (ISO)

isotretinoin (ISO)

lead diacetate (EXP)

lead(0) (ISO)

levofloxacin (EXP)

lipopolysaccharide (ISO)

menadione (ISO)

mercury dibromide (ISO)

methapyrilene (EXP)

methimazole (EXP)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nevirapine (EXP)

nickel sulfate (ISO)

Nutlin-3 (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

paraquat (EXP)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

propanal (ISO)

propiconazole (ISO)

raloxifene (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (IEA,ISO)

collagen catabolic process (ISO)

endoplasmic reticulum organization (ISO)

mitophagy (ISO)

negative regulation of neuron apoptotic process (IBA,ISO,ISS)

reticulophagy (IBA,IEA,ISO,ISS)

ribosomal large subunit biogenesis (IEA)

ribosome biogenesis (IEA)

sensory perception of pain (ISO,ISS)

substrate localization to autophagosome (IEA)

white fat cell differentiation (ISO)

Cellular Component

cis-Golgi network (ISO,ISS)

cytoplasm (IEA)

endoplasmic reticulum (IEA,ISO)

endoplasmic reticulum membrane (IBA,IEA,ISO,ISS)

Golgi apparatus (IEA)

nucleus (IEA)

Molecular Function

endoplasmic reticulum-autophagosome adaptor activity (ISO)

metal ion binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19838196	PMID:26040720	PMID:32086669	PMID:32716134	PMID:34212292	PMID:36056188

Genomics

Comparative Map Data

Retreg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	78,045,435 - 78,205,316 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	78,066,031 - 78,225,356 (+)	Ensembl				GRCr8
mRatBN7.2	2	76,335,609 - 76,474,817 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	76,335,609 - 76,493,898 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	83,455,839 - 83,595,059 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	81,577,567 - 81,716,777 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	76,582,768 - 76,722,071 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	78,391,921 - 78,401,569 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	78,391,921 - 78,399,987 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	2	78,103,387 - 78,276,927 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	97,821,407 - 97,972,821 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	77,470,558 - 77,566,123 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	72,093,456 - 72,182,485 (+)	NCBI		Celera
Cytogenetic Map	2	q22	NCBI

RETREG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	16,473,053 - 16,616,997 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	16,473,038 - 16,617,101 (-)	Ensembl			hg38	GRCh38
GRCh37	5	16,473,162 - 16,617,106 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	16,526,147 - 16,670,118 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	16,496,766 - 16,640,783 (-)	NCBI		Celera
Cytogenetic Map	5	p15.1	NCBI
HuRef	5	16,445,059 - 16,589,261 (-)	NCBI		HuRef
CHM1_1	5	16,473,095 - 16,617,108 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	16,412,398 - 16,556,330 (-)	NCBI		T2T-CHM13v2.0

Retreg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	25,840,795 - 25,973,782 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	25,843,266 - 25,973,773 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	25,843,298 - 25,973,696 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	25,843,180 - 25,973,687 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	25,773,019 - 25,903,442 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	25,787,989 - 25,918,412 (+)	NCBI		MGSCv36	mm8
Celera	15	26,616,789 - 26,745,263 (+)	NCBI		Celera
Cytogenetic Map	15	B1	NCBI
cM Map	15	9.59	NCBI

Retreg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	5,574,216 - 5,688,236 (-)	Ensembl
ChiLan1.0	NW_004955426	5,574,207 - 5,688,236 (-)	NCBI	ChiLan1.0	ChiLan1.0

RETREG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	16,704,829 - 16,851,099 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	14,858,454 - 15,004,650 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	16,774,596 - 16,920,948 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	16,612,583 - 16,756,808 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

RETREG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	86,817,391 - 86,921,119 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	86,323,200 - 86,438,561 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	87,442,470 - 87,564,197 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	87,442,238 - 87,587,920 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	86,965,905 - 87,080,546 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	87,202,448 - 87,317,283 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	88,059,445 - 88,174,500 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Retreg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	210,176,692 - 210,316,851 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	19,114,768 - 19,253,352 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	19,114,753 - 19,253,346 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RETREG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	5,726,494 - 5,879,714 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	5,726,493 - 5,879,461 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	6,170,402 - 6,324,535 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RETREG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	16,153,003 - 16,297,252 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	16,154,694 - 16,297,161 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666064	12,181,901 - 12,326,336 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Retreg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	13,376,502 - 13,501,918 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624751	13,377,583 - 13,502,144 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Retreg1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	154,834,423 - 154,867,862 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Retreg1
1575 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	61556902	106556902	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	61051883	104684275	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	61051541	105724065	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	61051541	105724065	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	60861391	105861391	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

RH132335

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	76,336,677 - 76,336,866 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	78,104,525 - 78,104,713	NCBI	Rnor6.0
Rnor_5.0	2	97,822,444 - 97,822,632	UniSTS	Rnor5.0
RGSC_v3.4	2	77,420,241 - 77,420,429	UniSTS	RGSC3.4
Celera	2	72,045,887 - 72,046,075	UniSTS
RH 3.4 Map	2	498.9	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH143838

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	76,473,375 - 76,473,490 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	78,400,141 - 78,400,255	NCBI	Rnor6.0
Rnor_6.0	2	78,255,668 - 78,255,782	NCBI	Rnor6.0
Rnor_5.0	2	97,971,380 - 97,971,494	UniSTS	Rnor5.0
RGSC_v3.4	2	77,564,695 - 77,564,809	UniSTS	RGSC3.4
Celera	2	72,181,057 - 72,181,171	UniSTS
RH 3.4 Map	2	503.0	UniSTS
Cytogenetic Map	2	q22	UniSTS

BE120148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	45,153,049 - 45,153,261 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	48,299,786 - 48,299,997	NCBI	Rnor6.0
Rnor_5.0	16	48,011,849 - 48,012,060	UniSTS	Rnor5.0
RGSC_v3.4	16	48,376,260 - 48,376,471	UniSTS	RGSC3.4
RGSC_v3.4	2	77,468,539 - 77,468,750	UniSTS	RGSC3.4
Celera	16	43,159,457 - 43,159,668	UniSTS
RH 3.4 Map	16	451.5	UniSTS
Cytogenetic Map	2	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
19	1	30	111	59	51	27	79	27	12	240	143	11	86	51	68	24	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY310142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY321329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000063951 ⟹ ENSRNOP00000062258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	76,335,609 - 76,474,796 (+)	Ensembl
Rnor_6.0 Ensembl	2	78,103,387 - 78,257,134 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000066879 ⟹ ENSRNOP00000060898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	78,262,839 - 78,276,927 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079455 ⟹ ENSRNOP00000069183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	76,441,501 - 76,474,802 (+)	Ensembl
Rnor_6.0 Ensembl	2	78,391,921 - 78,399,987 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084541 ⟹ ENSRNOP00000075424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	76,463,167 - 76,493,898 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089551 ⟹ ENSRNOP00000073087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	76,468,405 - 76,488,847 (+)	Ensembl
Rnor_6.0 Ensembl	2	78,245,459 - 78,271,382 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089805 ⟹ ENSRNOP00000075409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	76,443,711 - 76,474,802 (+)	Ensembl
Rnor_6.0 Ensembl	2	78,247,448 - 78,255,514 (+)	Ensembl

RefSeq Acc Id:

NM_001034912 ⟹ NP_001030084

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	78,066,124 - 78,205,303 (+)	NCBI
mRatBN7.2	2	76,335,609 - 76,474,804 (+)	NCBI
Rnor_6.0	2	78,391,921 - 78,401,569 (+)	NCBI
Rnor_5.0	2	97,821,407 - 97,972,821 (+)	NCBI
RGSC_v3.4	2	77,470,558 - 77,566,123 (+)	RGD
Celera	2	72,093,456 - 72,182,485 (+)	RGD

Sequence:

show sequence

CGCCAGGCGCGCGCGCGCGCGTGCCCGCCCGCCTCCCTCCCTGTCCCCGTCCCCATCCCCGTCC
CCGCCAGCAAAACACCGCTGAAGATGGCGAGCCCGGCGCCGGAGGAGCACGCCACGCAGGGATG
CCCAGCTACGGAGGAGCAGGAACCGCGACCCGGGGTTCCCGGGGAGGAGGCAGGGCCGGAGGGC
GCCGGGCCGCAGGTGGAGGAGGCCGCGGGCAGAGTGGCCGCCGCCCTGACCTGGCTACTCGGGG
AGCCCGTGCTGTGGCTGGGCTGGCGCGCCGACGAGCTCCTGAGCTGGAAGAGGCCGCTGCGCAG
CCTGCTCGCCTTCCTGGGTGCCAACCTGCTGTTCTGGTTCCTTGCCTTGACTCCGTGGAGAGTG
TATCATCTCATTTCTGTCATGATACTTGGTCGTGTTATCATGCAAATCATCAAGGACATGGTTT
TGTCCAGGGCAAGAGGTGCACAGTTGTGGAGGAGCCTCAGTGAAAGCTGGGAAGTTATCAATTC
CAAGCCAGATGAAAGACCCAGACTGAGCCACTGCATTGCAGAATCATGGATGAATTTCAGCATA
TTTCTTCAAGAAATGTCTCTTTTCAAACAGCAGAGCCCTGGCAAGTTTTGCCTCCTGGTCTGCA
GTGTGTGCACATTTTTTACAATCTTGGGAAGTTACATTCCTGGGGTCATTCTCAGCTACCTACT
GTTACTGTTTGCTTTTTTGTGTCCACTGTTTAAATGTAATGATATTGGACAAAAAATATACAGC
AAAGTCAAGTCCATTCTATTAAAACTAGATTTTGGAATTGGAGAATATATTAACCAGAAGAAAC
GTGAGAGATCTGAAGCAGATAAAGAAAAAAGCCACAAGGATGACAGTGAAATAGACTTTTCGGC
TCTTTGTCCTAAGATTAGCCTCACAGTTGCTGCCAAAGAGTTATCCGTGTCAGACACAGATGTG
TCAGAAGTCTCTTGGACTGATAATGGGACCTTCAACCTTTCAGAGGGGTACACTCCACAGACAG
ACACTTCTGATGATCTTGACCGGCCCAGTGAGGAAGTGTTCTCTCGAGATCTTTCAGATTTTCC
ATCTCTGGAAAATGGCGCGGGAACAAATGATGAAGATGAGTTAAGCCTTGGCTTACCCACAGAG
CTCAAGACAAAGAAGCAACAGTTGAACAGTGCTCACAGACCAAGCAAAGACAGGCAGTCAGCAG
CTGGCCTCTCACTTCCTCTCAAGAGCGACCAAGCCCTTCACTTGATGAGCAACCTGGCTGGGGA
TGTCATCACAGCTGCCATGACAGCTGCCATCAAAGACCAGCTAGAAGGGGCCCGGCAGGCCCTC
GCTCAGGCGGCGCCCACTCCAGGGGACGACACAGACACTGAGGAGGGGGATGATTTTGAACTAC
TTGACCAGGCAGAGCTAGATCAAATTGAGAGTGAGCTGGGACTAACACAAGACCAAGGGGCAGA
AGCCCAGCAAAGTAAGAAGTCCTCAGGCTTCCTTTCAAACCTGCTTGGAGGCCATTAGCCGGGA
ATCAGCTTGCCGCAAAGCACAGATAAACCACCCAAACATTTCAAACAAGCAGGGGGAAAAATGG
AAAAAAAATTGAATTGTAAGCTTTAATTACTTTAGATTTTTTGTTTTCTTTTCCCTTCTATAGT
GAGTTGGATATGTATCAGCTGATAATGATAGACTGACATTTCTGGTAGTTATTTTTATGTAATA
AGCATGGAAATGAACTTTATAGTTACATATATACATACTGTGGTGTCATAAGTGCTTAGGGGCT
GTTTGTAAAGAGAAACAAAAAAACCACATCAAACCCCATCAAACTGAGGTCTTTCTATAAGTAA
TCTTTTTCTTTATAATTTTCAAGCATGCAGAGATCGACAGCTGTGAACACACATGGCATCGGCC
CCCTAATTACTCCTCTTGGAAGTGGTTTATCAAATTCTGATAGATTTCAATGTAAAAAAGGAGA
AATATCAAAATGTTTGTAGTTGAAGGGCTATGGAAATGCTATCAAAATTAATTTTCTAGGAAAA
ACTTTAAAAATAAGTACTATCTATAGGCTGAAATATTTCCATGTTATTTCTACAGTTGTAGACA
GAGGCTTACTTGTCAGGTGGCATGCTCCACTGACTGCCACATCTAGTCTTGAAAAGAGGTGGTA
CTGACCCACAGAAAGCAGCCAGTTCTGTGTCTCTTCATGATGCTCTTGTAATGTTTGCAATGGT
AAGTGCACACTATTTTGCACACTCAGATGTAAGCAAAACCTGACGTTTCTGTAATGTGTTCCAG
TCTCCTAGGATTGTGAATCTAGTTATAGGTATGTCCATGAGTGATGTGCTCATTGGTGATCATC
AACACCCCCCCTTTTTTTTTCAGTTTACAAATGCAGAACAGAGGAACTTGCTTGAACTTTAAAG
TTTATTTCTCTGCCGCTGCACTCTCAATATGCAATCCGTTTCTTACTGGGAAGCTAGTGTATGC
TTTTTCCTTTAAACTGTTTTTTTTTGATCACTTTTACATAATCAAATTTGACTTACAGTGGAAA
CCAAGATAGTTGTTTTTGTGAAACAATCTTTTAGAAGGACTGAGGGACCATGTCAGCAAATATC
TTAGATCTTCAGTTATAGCTGGCATTTCTACACAGACACACAAGATCCTTACAAAGGAAGGGTA
ATCTAAGACTGTAGAAGTCTGTGTTTCAGTTTCATCTCTTTTATTTCTAAAGACTAATTACAGG
TAACTTGACCTTTTAATGCACCATCTCCTATTTATTTATTTTTTTCTCTCTGAGGTATTAAAAA
TATCAAGACTGAATTTTGCCAAATGTAAGAGGGAGGAAAGTCCCTGAAGACTCTGACTACTTGC
TTATTTTTGATTGACCTTCTATGCTTATGTCATTAGTGCCTCACAACTGTGTTTGACGTCCTTT
ATTGATACAGAGTGAGCCTGTGCCTTCATTTTCTTGCCCATTTTGGTACTGATGTAAATTTGTG
TTAGAAAATCTTGGAACTCTGTGAGTCTGGGAAGAATATATCTGAATCCTATTCAATACATTTG
CTGGATGTGAAGAAAAATACAGCCACATATTTATAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006232084 ⟹ XP_006232146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	78,172,519 - 78,205,316 (+)	NCBI
mRatBN7.2	2	76,441,262 - 76,474,817 (+)	NCBI

Sequence:

show sequence

TGTGACTCAAAGGAGATTGGATAGCTGGAGTGAGGTTTCAACCTGCCTGTGGCTACTCCACCTT
TTGGTAGGCGCCTAGATCTTGCCAGGAAAAAAAAAAAAAAGGAAAGAGGGCAGCAGGCGGCTGG
GTGAAGTCATCCCTGGTGACACCTTCTCACAGGACTTCAGGGAAAATGCTGGGCGACTGGGCAG
TGCCTCTGCCCAGCTGCCTGTCACGGTGCTGGGAGTGAGAGGTGACCTCTTTATTTTTAGCAGG
GGGCTGTCAGGAGAGTTCACTCCTCTGCTTCATCCAAGACAGGAGGCAGTCACTTTGGAAGTTT
GTAAACACCGACTTTCTCAGTAGAGGTGGGACACTTTTCTCCAGAAAGGGAAGAATTTCCCTGC
CGGGGTTTCCCTCTTCTTAGAGTCGCACTGTGGACAAGACAGCGATCTTTGGCTGTCTGAGTTG
TGGCAAGCAGGCGCCGCTCAAGTTCTAATTATTACAGGGCAGTCATGCCTGCCGGCGACGGCTG
TGGACCAGGCAGAAGCTGGGAAGTTATCAATTCCAAGCCAGATGAAAGACCCAGACTGAGCCAC
TGCATTGCAGAATCATGGATGAATTTCAGCATATTTCTTCAAGAAATGTCTCTTTTCAAACAGC
AGAGCCCTGGCAAGTTTTGCCTCCTGGTCTGCAGTGTGTGCACATTTTTTACAATCTTGGGAAG
TTACATTCCTGGGGTCATTCTCAGCTACCTACTGTTACTGTTTGCTTTTTTGTGTCCACTGTTT
AAATGTAATGATATTGGACAAAAAATATACAGCAAAGTCAAGTCCATTCTATTAAAACTAGATT
TTGGAATTGGAGAATATATTAACCAGAAGAAACGTGAGAGATCTGAAGCAGATAAAGAAAAAAG
CCACAAGGATGACAGTGAAATAGACTTTTCGGCTCTTTGTCCTAAGATTAGCCTCACAGTTGCT
GCCAAAGAGTTATCCGTGTCAGACACAGATGTGTCAGAAGTCTCTTGGACTGATAATGGGACCT
TCAACCTTTCAGAGGGGTACACTCCACAGACAGACACTTCTGATGATCTTGACCGGCCCAGTGA
GGAAGTGTTCTCTCGAGATCTTTCAGATTTTCCATCTCTGGAAAATGGCGCGGGAACAAATGAT
GAAGATGAGTTAAGCCTTGGCTTACCCACAGAGCTCAAGACAAAGAAGCAACAGTTGAACAGTG
CTCACAGACCAAGCAAAGACAGGCAGTCAGCAGCTGGCCTCTCACTTCCTCTCAAGAGCGACCA
AGCCCTTCACTTGATGAGCAACCTGGCTGGGGATGTCATCACAGCTGCCATGACAGCTGCCATC
AAAGACCAGCTAGAAGGGGCCCGGCAGGCCCTCGCTCAGGCGGCGCCCACTCCAGGGGACGACA
CAGACACTGAGGAGGGGGATGATTTTGAACTACTTGACCAGGCAGAGCTAGATCAAATTGAGAG
TGAGCTGGGACTAACACAAGACCAAGGGGCAGAAGCCCAGCAAAGTAAGAAGTCCTCAGGCTTC
CTTTCAAACCTGCTTGGAGGCCATTAGCCGGGAATCAGCTTGCCGCAAAGCACAGATAAACCAC
CCAAACATTTCAAACAAGCAGGGGGAAAAATGGAAAAAAAATTGAATTGTAAGCTTTAATTACT
TTAGATTTTTTGTTTTCTTTTCCCTTCTATAGTGAGTTGGATATGTATCAGCTGATAATGATAG
ACTGACATTTCTGGTAGTTATTTTTATGTAATAAGCATGGAAATGAACTTTATAGTTACATATA
TACATACTGTGGTGTCATAAGTGCTTAGGGGCTGTTTGTAAAGAGAAACAAAAAAACCACATCA
AACCCCATCAAACTGAGGTCTTTCTATAAGTAATCTTTTTCTTTATAATTTTCAAGCATGCAGA
GATCGACAGCTGTGAACACACATGGCATCGGCCCCCTAATTACTCCTCTTGGAAGTGGTTTATC
AAATTCTGATAGATTTCAATGTAAAAAAGGAGAAATATCAAAATGTTTGTAGTTGAAGGGCTAT
GGAAATGCTATCAAAATTAATTTTCTAGGAAAAACTTTAAAAATAAGTACTATCTATAGGCTGA
AATATTTCCATGTTATTTCTACAGTTGTAGACAGAGGCTTACTTGTCAGGTGGCATGCTCCACT
GACTGCCACATCTAGTCTTGAAAAGAGGTGGTACTGACCCACAGAAAGCAGCCAGTTCTGTGTC
TCTTCATGATGCTCTTGTAATGTTTGCAATGGTAAGTGCACACTATTTTGCACACTCAGATGTA
AGCAAAACCTGACGTTTCTGTAATGTGTTCCAGTCTCCTAGGATTGTGAATCTAGTTATAGGTA
TGTCCATGAGTGATGTGCTCATTGGTGATCATCAACACCCCCCCTTTTTTTTTCAGTTTACAAA
TGCAGAACAGAGGAACTTGCTTGAACTTTAAAGTTTATTTCTCTGCCGCTGCACTCTCAATATG
CAATCCGTTTCTTACTGGGAAGCTAGTGTATGCTTTTTCCTTTAAACTGTTTTTTTTTGATCAC
TTTTACATAATCAAATTTGACTTACAGTGGAAACCAAGATAGTTGTTTTTGTGAAACAATCTTT
TAGAAGGACTGAGGGACCATGTCAGCAAATATCTTAGATCTTCAGTTATAGCTGGCATTTCTAC
ACAGACACACAAGATCCTTACAAAGGAAGGGTAATCTAAGACTGTAGAAGTCTGTGTTTCAGTT
TCATCTCTTTTATTTCTAAAGACTAATTACAGGTAACTTGACCTTTTAATGCACCATCTCCTAT
TTATTTATTTTTTTCTCTCTGAGGTATTAAAAATATCAAGACTGAATTTTGCCAAATGTAAGAG
GGAGGAAAGTCCCTGAAGACTCTGACTACTTGCTTATTTTTGATTGACCTTCTATGCTTATGTC
ATTAGTGCCTCACAACTGTGTTTGACGTCCTTTATTGATACAGAGTGAGCCTGTGCCTTCATTT
TCTTGCCCATTTTGGTACTGATGTAAATTTGTGTTAGAAAATCTTGGAACTCTGTGAGTCTGGG
AAGAATATATCTGAATCCTATTCAATACATTTGCTGGATGTGAAGAAAAATACAGCCACATATT
TATAAAACAGTTGTTACCAGTA

hide sequence

RefSeq Acc Id:

XM_039103026 ⟹ XP_038958954

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	78,130,450 - 78,205,316 (+)	NCBI
mRatBN7.2	2	76,400,342 - 76,474,817 (+)	NCBI

RefSeq Acc Id:

XM_039103027 ⟹ XP_038958955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	78,131,082 - 78,205,316 (+)	NCBI
mRatBN7.2	2	76,400,583 - 76,474,817 (+)	NCBI

RefSeq Acc Id:

XM_063282446 ⟹ XP_063138516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	78,045,435 - 78,205,316 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030084	(Get FASTA)	NCBI Sequence Viewer
	XP_006232146	(Get FASTA)	NCBI Sequence Viewer
	XP_038958954	(Get FASTA)	NCBI Sequence Viewer
	XP_038958955	(Get FASTA)	NCBI Sequence Viewer
	XP_063138516	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89887	(Get FASTA)	NCBI Sequence Viewer
	AAP78750	(Get FASTA)	NCBI Sequence Viewer
	AAP86261	(Get FASTA)	NCBI Sequence Viewer
	EDL82614	(Get FASTA)	NCBI Sequence Viewer
	EDL82615	(Get FASTA)	NCBI Sequence Viewer
	EDL82616	(Get FASTA)	NCBI Sequence Viewer
	EDL82617	(Get FASTA)	NCBI Sequence Viewer
	EDL82618	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062258.2
	ENSRNOP00000098260
	ENSRNOP00000100789
	ENSRNOP00000112169
GenBank Protein	Q5FVM3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001030084 ⟸ NM_001034912

- UniProtKB:

Q5FVM3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASPAPEEHATQGCPATEEQEPRPGVPGEEAGPEGAGPQVEEAAGRVAAALTWLLGEPVLWLGW
RADELLSWKRPLRSLLAFLGANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDMVLSRARGAQ
LWRSLSESWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTI
LGSYIPGVILSYLLLLFAFLCPLFKCNDIGQKIYSKVKSILLKLDFGIGEYINQKKRERSEADK
EKSHKDDSEIDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDR
PSEEVFSRDLSDFPSLENGAGTNDEDELSLGLPTELKTKKQQLNSAHRPSKDRQSAAGLSLPLK
SDQALHLMSNLAGDVITAAMTAAIKDQLEGARQALAQAAPTPGDDTDTEEGDDFELLDQAELDQ
IESELGLTQDQGAEAQQSKKSSGFLSNLLGGH

hide sequence

Ensembl Acc Id:

ENSRNOP00000069183 ⟸ ENSRNOT00000079455

RefSeq Acc Id:	XP_038958954 ⟸ XM_039103026
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2KAI5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958955 ⟸ XM_039103027
- Peptide Label:	isoform X4
- UniProtKB:	A6JMW7 (UniProtKB/TrEMBL), A0A0G2KAI5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_006232146 ⟸ XM_006232084
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JUQ3 (UniProtKB/TrEMBL), A0A0G2KAI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPAGDGCGPGRSWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCT FFTILGSYIPGVILSYLLLLFAFLCPLFKCNDIGQKIYSKVKSILLKLDFGIGEYINQKKRERS EADKEKSHKDDSEIDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSD DLDRPSEEVFSRDLSDFPSLENGAGTNDEDELSLGLPTELKTKKQQLNSAHRPSKDRQSAAGLS LPLKSDQALHLMSNLAGDVITAAMTAAIKDQLEGARQALAQAAPTPGDDTDTEEGDDFELLDQA ELDQIESELGLTQDQGAEAQQSKKSSGFLSNLLGGH hide sequence

Ensembl Acc Id:

ENSRNOP00000062258 ⟸ ENSRNOT00000063951

Ensembl Acc Id:

ENSRNOP00000075409 ⟸ ENSRNOT00000089805

Ensembl Acc Id:

ENSRNOP00000073087 ⟸ ENSRNOT00000089551

Ensembl Acc Id:

ENSRNOP00000060898 ⟸ ENSRNOT00000066879

Ensembl Acc Id:

ENSRNOP00000075424 ⟸ ENSRNOT00000084541

RefSeq Acc Id:	XP_063138516 ⟸ XM_063282446
- Peptide Label:	isoform X1

Protein Domains

RETREG1-3/ARL6IP-like N-terminal reticulon-homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FVM3-F1-model_v2	AlphaFold	Q5FVM3	1-480	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565003	AgrOrtholog
BioCyc Gene	G2FUF-53940	BioCyc
Ensembl Genes	ENSRNOG00000010589	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000057522	Ensembl
Ensembl Transcript	ENSRNOT00000063951.4	UniProtKB/Swiss-Prot
	ENSRNOT00000120625	ENTREZGENE
	ENSRNOT00000139704	ENTREZGENE
	ENSRNOT00000164321	ENTREZGENE
IMAGE_CLONE	IMAGE:7371502	IMAGE-MGC_LOAD
InterPro	RETR1_RHD	UniProtKB/Swiss-Prot
	RETREG1/3	UniProtKB/Swiss-Prot
KEGG Report	rno:619558	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109057	IMAGE-MGC_LOAD
NCBI Gene	619558	ENTREZGENE
PANTHER	PTHR28659	UniProtKB/Swiss-Prot
	PTHR28659:SF3	UniProtKB/Swiss-Prot
Pfam	RHD_RETREG1-3	UniProtKB/Swiss-Prot
PhenoGen	Retreg1	PhenoGen
RatGTEx	ENSRNOG00000010589	RatGTEx
	ENSRNOG00000057522	RatGTEx
UniProt	A0A0G2JUQ3	ENTREZGENE
	A0A0G2KAI5	ENTREZGENE
	A0ABK0L902_RAT	UniProtKB/TrEMBL
	A0ABK0LF75_RAT	UniProtKB/TrEMBL
	A0ABK0LFX7_RAT	UniProtKB/TrEMBL
	A0ABK0LLS1_RAT	UniProtKB/TrEMBL
	A0ABK0M859_RAT	UniProtKB/TrEMBL
	A6JMW7	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVM3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Retreg1	reticulophagy regulator 1	LOC103689968	protein FAM134B	Data merged from RGD:9390936	737654	PROVISIONAL
2017-03-27	Retreg1	reticulophagy regulator 1	Fam134b	family with sequence similarity 134, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-08-25	LOC103689968	protein FAM134B			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-05	Fam134b	family with sequence similarity 134, member B	LOC619558	hypothetical protein LOC619558	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC619558	hypothetical protein LOC619558			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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