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Gene: Ylpm1 (YLP motif containing 1) Rattus norvegicus

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Symbol:

Ylpm1

Name:

YLP motif containing 1

RGD ID:

1564946

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific. Predicted to be involved in regulation of telomere maintenance. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human YLPM1 (YLP motif containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC299199; Nuclear protein ZAP3; RGD1564946; similar to YLP motif containing protein 1 (Nuclear protein ZAP3) (ZAP113); YLP motif-containing protein 1; Zap; Zap3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YLPM1 (YLP motif containing 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Ylpm1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ylpm1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YLPM1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YLPM1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ylpm1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YLPM1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YLPM1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ylpm1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ylpm1 (YLP motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	YLPM1 (YLP motif containing 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	YLPM1 (YLP motif containing 1)	Alliance	DIOPT (HGNC\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ylpm1 (YLP motif containing 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ylpm1 (YLP motif containing 1)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ZAP3	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	ZAP3	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ylpm1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	ylpm1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	110,373,371 - 110,449,578 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	110,373,686 - 110,449,578 (+)	Ensembl				GRCr8
mRatBN7.2	6	104,642,615 - 104,718,508 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,642,615 - 104,718,508 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	104,812,087 - 104,887,860 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	105,111,262 - 105,187,031 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	104,480,616 - 104,556,387 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	108,820,774 - 108,897,209 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,820,774 - 108,897,426 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	116,659,698 - 116,736,133 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	109,041,410 - 109,117,751 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	102,465,583 - 102,541,251 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

myoepithelioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

clobetasol (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

inulin (ISO)

ivermectin (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dichloride (ISO)

miconazole (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of telomere maintenance (IBA,ISO)

Cellular Component

nuclear speck (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	The nuclear PP1 interacting protein ZAP3 (ZAP) is a putative nucleoside kinase that complexes with SAM68, CIA, NF110/45, and HNRNP-G.	Ulke-Lemee A, etal., Biochim Biophys Acta. 2007 Oct;1774(10):1339-50. Epub 2007 Aug 15.

Additional References at PubMed

PMID:11555636	PMID:14724321	PMID:15057822	PMID:15100092	PMID:15511642	PMID:21700703	PMID:22681889

Genomics

Comparative Map Data

Ylpm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	110,373,371 - 110,449,578 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	110,373,686 - 110,449,578 (+)	Ensembl				GRCr8
mRatBN7.2	6	104,642,615 - 104,718,508 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,642,615 - 104,718,508 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	104,812,087 - 104,887,860 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	105,111,262 - 105,187,031 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	104,480,616 - 104,556,387 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	108,820,774 - 108,897,209 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,820,774 - 108,897,426 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	116,659,698 - 116,736,133 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	109,041,410 - 109,117,751 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	102,465,583 - 102,541,251 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

YLPM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	74,763,316 - 74,837,318 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	74,763,316 - 74,859,435 (+)	Ensembl			hg38	GRCh38
GRCh37	14	75,230,019 - 75,304,021 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	74,299,822 - 74,373,766 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	55,268,437 - 55,342,377 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	55,398,053 - 55,472,008 (+)	NCBI		HuRef
CHM1_1	14	75,169,242 - 75,243,180 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	68,972,425 - 69,046,421 (+)	NCBI		T2T-CHM13v2.0

Ylpm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	85,042,977 - 85,130,501 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	85,043,095 - 85,117,289 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	84,996,203 - 85,088,068 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,996,321 - 85,070,515 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	86,337,271 - 86,411,465 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,885,492 - 85,959,595 (+)	NCBI		MGSCv36	mm8
Celera	12	86,453,641 - 86,527,763 (+)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.5	NCBI

Ylpm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	722,200 - 784,232 (-)	Ensembl
ChiLan1.0	NW_004955523	721,447 - 784,097 (-)	NCBI	ChiLan1.0	ChiLan1.0

YLPM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	75,846,087 - 75,918,992 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	75,062,592 - 75,135,497 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	55,315,429 - 55,388,330 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	74,160,705 - 74,233,548 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	74,160,867 - 74,232,769 (+)	Ensembl			panPan2	panpan1.1

YLPM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,878,176 - 47,957,714 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,878,298 - 47,980,569 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,561,704 - 47,640,166 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	48,104,816 - 48,183,570 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	48,104,852 - 48,200,943 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,775,819 - 47,854,533 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,797,158 - 47,875,862 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	48,195,155 - 48,274,094 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ylpm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	28,071,778 - 28,147,170 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	3,922,308 - 3,997,930 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	3,922,314 - 3,997,187 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YLPM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	97,976,144 - 98,042,230 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	97,976,129 - 98,042,234 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	103,818,803 - 103,886,145 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YLPM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	51,975,723 - 52,048,936 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	51,975,767 - 52,076,365 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	40,209,682 - 40,283,748 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ylpm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	26,867,550 - 26,932,469 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	26,865,617 - 26,932,670 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ylpm1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	99,104,042 - 99,181,796 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ylpm1
536 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	372
Count of miRNA genes:	226
Interacting mature miRNAs:	267
Transcripts:	ENSRNOT00000006492
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat

Markers in Region

RH128199

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	104,718,145 - 104,718,342 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	108,896,847 - 108,897,043	NCBI	Rnor6.0
Rnor_5.0	6	116,659,864 - 116,660,060	UniSTS	Rnor5.0
RGSC_v3.4	6	109,117,389 - 109,117,585	UniSTS	RGSC3.4
Celera	6	102,540,889 - 102,541,085	UniSTS
RH 3.4 Map	6	731.99	UniSTS
Cytogenetic Map	6	q31	UniSTS

RH138596

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	104,705,268 - 104,705,390 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	108,883,853 - 108,883,974	NCBI	Rnor6.0
Rnor_5.0	6	116,672,933 - 116,673,054	UniSTS	Rnor5.0
RGSC_v3.4	6	109,104,066 - 109,104,187	UniSTS	RGSC3.4
Celera	6	102,527,844 - 102,527,965	UniSTS
RH 3.4 Map	6	731.89	UniSTS
Cytogenetic Map	6	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006492 ⟹ ENSRNOP00000006492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	110,373,686 - 110,449,578 (+)	Ensembl
mRatBN7.2 Ensembl	6	104,642,615 - 104,718,508 (+)	Ensembl
Rnor_6.0 Ensembl	6	108,820,920 - 108,896,469 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080038 ⟹ ENSRNOP00000073707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	110,373,686 - 110,449,578 (+)	Ensembl
mRatBN7.2 Ensembl	6	104,642,615 - 104,718,508 (+)	Ensembl
Rnor_6.0 Ensembl	6	108,820,811 - 108,897,426 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089683 ⟹ ENSRNOP00000070749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	110,373,686 - 110,449,578 (+)	Ensembl
mRatBN7.2 Ensembl	6	104,642,615 - 104,718,508 (+)	Ensembl
Rnor_6.0 Ensembl	6	108,820,774 - 108,897,209 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126954 ⟹ ENSRNOP00000106986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	110,373,686 - 110,437,455 (+)	Ensembl

RefSeq Acc Id:

NM_001271258 ⟹ NP_001258187

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	110,373,686 - 110,449,578 (+)	NCBI
mRatBN7.2	6	104,642,615 - 104,718,508 (+)	NCBI
Rnor_6.0	6	108,820,774 - 108,897,209 (+)	NCBI
Rnor_5.0	6	116,659,698 - 116,736,133 (-)	NCBI
Celera	6	102,465,583 - 102,541,251 (+)	NCBI

Sequence:

show sequence

CGCCGGCGCACTGGCGCGCTCCGTTCACACGCTCCGCGGCCTGTAGGCACCGCGAGTTCCGGCT
GTCGCCGTCACCGCCGCGGCTCCTGGAGGTCGGTTGCAACGAGTAACGGCGCCGGGACGAGCCC
CGCGCCTTCATTTCTGATATGTACCCGAATTGGGGCCGGTATGGCGGGAGCAGCCACTATCCGC
CGCCACCGGTCCCGCCGCCGCCGCCACCGGTGGCGCTTCCCGAGGCCTCGCCGGGGCCCGGGTA
CTCCAGTTCGACGGCTCCCGCGGCCCCTTCTTCTTCGGGCTTCATGAGCTTCCGAGAGCAACAC
TTGGCGCAGCTCCAGCAGCTGCAGCAGATGCACCAGAAGCAAATGCAGTGCGTGCTCCAGCCCC
ACCATCTTCCTCCGCCCCCGCTGCCGCCCCCGCCGGTGATGCCCGGGGGCGGCTACGGAGACTG
GCAGCCGCCACCGCCACCGATGCCCCCGCCACCTGGGCCAGCCCTCAGCTATCAGAAGCAGCAG
CAGTACAAACACCAGATGATCCACCACCAACGAGATGGGCCTCCCGGTTTGGTTCCAATGGAGC
TGGAGTCCCCTCCTGAATCTCCCCCTGTACCTCCAGGATCCTATATGCCCCCATCTCAGTCGTA
CATGCCTCCACCTCAGCCACCACCCTCGTACTATCCCCCTTCTTCCGCTCAGCCCTACCTGCCC
CCTGCTCAGCCGTCCCCTTCACAGTCTCCACCTTCCCAGTCCTATCTGGCGCCTACTCCTTCTT
ATTCTTCCTCTTCCTCCTCGCAATCATATTTGAGCCATTCCCAGCCCTACTTACCCCCTTCTCA
GGCATCTCCTTCCCGCTCCTCCCAGGGCCCTTCCAAACCCCAGCTACCACCACCACCACCGTCC
ATCCCTTCTGGGAATAAAACAACTATCCAGCAAGAGCCTTTGGAGACTGGGGCCAAGAACAAGA
ATGCTGAACAGAAACAAGCTGCTCCTGAACCAGATCCCTCTACAATGACTCCACAGGAGCAACA
ACAATATTGGTATCGACAGCATCTGCTTAGCTTGCAGCAGAGGACAAAAGTGCATTTGCCAGGA
CATAAAAAGGGTCTTGTCACGGCAAAGGATGTACCAGAACCCATAAAAGAAGAAGCTCCAGTGC
CAGCTACCAGTCAGATAGCAGAGCCTCTTGCAGCGGAAGAGCCCCCATTACCACCTCCAAATGA
AGAGATGCCACCTCCACTCCCGCCTGAGGAGCCCCAGTCAGAAGACCCAGAAGAAGATGCCAGA
TTAAAACAGTTGCAGGCTGCAGCGGCACATTGGCAACAGCACCAGCAGCATCGAGTCGGCTTCC
AGTATCAAGGAATAATGCAGAGGCACACTCAGCTACAGCAGATCCTACAGCAGTACCAGCAAGT
CATCCAGCACTCGCCACATATACAGACCATGTCTCTCGATGTGCAGCTGCGACACTATGAGATG
CAGCAGCAACAGTTTCAACGTCTCTATCAGGAGTGGGAGCGAGAGTTCCAGCTGTGGGAGGAGC
AGCTCCATTCCTACCCCCATAAAGATCAGCTTGAGGAGTATGAGAAGCAGTGGAAATCATGGCA
AGGACATATGCGAGCCACTCAGACCTATCTCCAGGAGAAAGTCACCTCATTTCAGGCTGTGAAG
AACCAGTACATGGGAAACATGGCAATGCCACCTCCATTTGTCCCATATTCGCAGATGCCGCCAC
CTCTGCCAACAATGCCCCCTCCAGTATTACCTCCATCATTGCCACCACCAGTGATGCCCCCCGC
CCTGCCTTCCACCATACCACCACCTGGCATGCCTCCACCTGTGATGCCACCTTCTCTACCAACC
TCTGTTCCCCCACCAGGAATGCCTCCATCACTTTCTTCAGCAGTTCTCCCCCCGCCCTCCCTCT
CTTCAGCAGGACCACCACCAGTCCTTCCCCCTCCATCTCTCTCTGGGGCACCACCTGTCCTGCC
CCTCCCACCGTTATCTTCAGCCACACCTCCCCCTGGAATACCTCCCCCTGGAGTCCCACAAGGG
ATGCCGCCTCAGTTAACAGCCCCGGTTCCACCAGCCTCCAGTTCTCAGAACTCACAGGTCCCAG
AGAAACCTAGACAAGCACTGCTTCCCACACCTGTGTCTTTTGGTTCAACCCCACCTTCACCATA
TCACCCTCCACCTCAGTCAGAACAAGGGAATTCCAAACCTCTGAACAAGGTGTTCTCATCTGAG
CAAGGACTGGGCGAGTCTTCTTCTGCTCTATCTCAATCCGTCATTGCAGCTAAGGACACGCCAG
TGAAGTCAGGTGGACTGCTTGCAGACCCTCCTAAAGGCAGTTTCTTAGAAGGTCCGAGAGGTCC
AAGATTTGATGGTCCTCGAAGATTTGAGGATTTAGGGTCAAGGTGTGAAGGACCGAGACCCAAA
GGGCCTCGTTTTGAAGGAAATCGCCCCGATGGGCCAAGACCCAGATATGAAAGTCACCCAGCAG
AGGGCACTAAAAGCAAATGGGGAACGATCCCCCGGGGCCCAGCATCTCAATTTTATATAACTCC
TAATACATCCCTGAGTCCTCGACAGAGTGGACCACAGTGGAAAGGCCACAAAGCAACTGTCGGA
CAGCAGCATCAGCAGCAGCCTAAGCAGCAACCTAAGTCACAAGCAGAACCTCTTTCAGGAAACA
AAGAGCCATTAGCAGACACAAGTAGTAACCAGCAGAAGAATTTAAAAATTCAGTCAGCCGCGTT
TTCCATTTCTGCAGATGTCAAGGATACCAAGGCGGCTCAGTCAAATGAGAATCTAAGCAACTCT
CAACAAGAGCCACCTAAAAGCCAAGTCTCGGAAGCACCCATAGAGCCCTCTAATTGGAACCAGA
ATTCTCAAAGTATGGAGACTGAAATGGACAAAGCCCAAGGTGTTACTCAGCCTGTATCCCTTGC
AAATAAACCTGTACCTTCTCAATCTCCTTTCCCCTCAAAAGTAGGGAGCATGGAGGGAGGAGCT
GCAGTAGCAGCAGCAGCATTGTCTGCAGATGATTTCAAACCTTTGGGTGTTGGTTTGTCCCACT
CAGAAAACCACCAAGAAAAAGCTCTTCCTCAGCCAGACAGCAGAGAAAATAGATTAGAAGGCAA
TAAAGGCAGCAGCTCATCCTACAGAGGTCCTGGGCAAAATAGAGTGGAAGATTCACGGGATAAA
GGACTAGTAAACAGAGGTCGTGGCCAGACAATTAATCGAGGTCCAGGTCTGATCAAGCAAGAAG
ATTTCCACGATAAAATGCTGGGTAGAAGAGAAGACAGTCGTGAGAAAATAAACAAAGGAGAAGG
CAGCCGGGACAGGGTGTTTGTGAGACCGGGAAGCAGTCGGGATAAAATACCAGGTGGCCTACAA
GACAGTCAGGACAGTAGAGCCAACAGTAGAGAAAGAGGGCCACCTCGCAGGGCTGGCAGTCAGG
AGAGAGGACCTCCTCGAAGGGCTGGAAGTAGAGAGAGAGTACCCCCTCAAAGAGCTGGGAGCAG
GGAGAGGGGACCACCTCGAGGGCCAGGTAGTCGAGAAAGGGGATTAGGAAGGCCAGATTTTGGT
CATGATAGAGTTCCATTCAGACCAGAACCAGGAGATGGTGGAGACAAAATGTATCCTTACCACC
GAGATGAACCTTCTAGGGCTTCGTGGAACCATGGAGAAGAGAGAGGACACGAAGAGTTCCCATT
AGATGGTAGAAATGTACCAATTGAGCGAGAGAGACTCGATGACTGGGATAGAAAAAGATACTGG
AGAGAGTGTGAACGTGACTATCAAGATGATACACTAGATTCATACGGCAGAGAGGACAGGTTCT
CAGCACCACCATCTCGGCCTCATGATGGAGACAGGCGAGGCCCTTGGTGGGATGATTGGGAAAG
AGATCAAGATATGGATGAGGGTTATGGTAGGGAAGTGGACAGGGACTTAGACAGAGATGTGGAT
CGGATTAGAAGACCTGTGGATATATATGATAGAAATGTGGATAACGAATGGGACAGAGATTATG
GGAGGCCACTGGATGAACAGGAATCACAGTTTCGTGAACGGGATATCCCATCTCTTCCACCTTT
ACCACCTCTCCCACCTTTGGATAGATATCGGGATGATAGATGGAGAGAAGAAAGAAATCGAGAA
CATGGGTATGACCGAGATTTCCGTGATAGGGGTGAGTTGAGGATTCGAGAGTACCCAGAAAGAG
GAGATACATGGCGGGAAAAGCGAGATTATGTTCCTGACAGAATGGACTGGGAAAGAGAGCGGTT
GTCAGACAGATGGTACCCCTCTGATGCGGAAAGACACTCCCCCATGGCGGAACATATGCCATCC
TCACATCATTCCTCTGAAATGATGGGGTCCGATGCAAACTTAGACTCTGACCAAGGCCTTGGAG
GGGTAATGGTTCTCAGTCAGAGGCAGCACGAAATCATTTTGAAAGCTGCACAAGAATTGAAAAT
GCTTCGAGAACAGAAAGAGCAGCTTCAAAAGTTGAAAGACTTTGGGTCTGAGCCACAGACGGCT
GACCATCTACCACCCCCGGACTCAAGACTACAGAATACGTCAAGGCCTGGGATGTACCCGCCTC
CAGGATCCTATAGACCACCCCCTCCTATGGGTAAGCCACCTGGGTCAATTGTGAGACCCTCTGC
TCCACCAGCAAGATCATGTGTTCCTATGACTAGGCCTCCTGTGCCAATACCACCACCGCCTCCT
CCACCTCCACCACCACCACCTCCTCCTCCGGTTATAAAGCCAAAAACTTCATCTGTGAAACAGG
AACGCTGGGACGAAGATTCTTTCTTTGGGCTCTGGGATACAAATGATGATCAAGGACTGAATTC
AGAATTTAAGCGAGACACTGCAGCAATTCCATCTGCTCCGGTATTACCACCCCCACCTGTTCAT
CCTTCCATTCCCCCTCCTGGCCCAATGCCTATGGGTATGCCACCAATGTCCAAACCACCACCAG
TGCAGCATACAGTTGACTATGGCCATGGCCGAGATATGCCTACTAATAAAGTTGAACAGATCCC
GTATGGAGAAAGAATAACTCTACGCCCAGATCCATTACCTGAAAGGTCAGCTTTCGATGCAGAT
CATGCAGGCCAGCGTGACCGCTATGATAGAGATAGAGACCGTGAACCTTATTTTGACCGTCAAA
GTAATATGACAGATCATCGAGATTTTAAAAGGGACCGAGAGACACACAGAGATCGGGATCGTGT
TCTTGACTATGAGCGGGATCGATTTGACAGAGAGCGTAGACCCCGAGATGACAGGAATCAATCA
TACCGTGACAAAAAAGACCATTCTTCATCCAGAAGAGGAGGATTTGATAGGCCATCCTATGACA
GGAAGTCTGATAGACCGCCCTATGAAGGCCCACCCATGTTTGGAGGAGAACGAAGAACTTACCC
GGAGGAGCGGATGCCTCTGCCAGCTCCTTCCCTGGGCCACCAGCCACCTCCAGTTCCACGGGTT
GAGAAGAAGCCTGAGTCCAAGAATGTGGACGACATTCTGAAACCACCAGGCCGGGAGAGCCGGC
CTGAAAGAATTGTTGTTATAATGAGAGGATTGCCTGGCAGTGGAAAGACACATGTTGCAAAACT
TATCCGGGATAAGGAAGTAGAATTCGGAGGACCTGCACCCAGGGTTTTAAGTCTAGATGATTAT
TTCATTGCTGAAGTAGAAAAAGAAGAAAAAGATCCAGATTCTGGAAAGAAAGTGAAAAAGAAGG
TAATGGAGTATGAATATGAAGCTGACATGGAGGAGACTTACCGCACCAGCATGTTCAAAACTTT
CAAAAAGACGCTAGATGATGGCTTTTTCCCTTTCATTATTCTGGATGCTATCAATGACAGAGTT
AGACATTTTGACCAGTTTTGGAGCGCAGCAAAAACCAAGGGTTTTGAGGTGTATTTGGCTGAAA
TGAGTGCCGATAACCAGACTTGTGGCAAGAGAAATATTCATGGAAGAAAGCTTAAAGAAATAAA
CAAGATGGCGGAACATTGGGAAGCTGCACCCCGTCACATGATGCGTCTGGACATCCGTTCCCTG
CTACAAGATGCTGCAATTGAAGAAGTAGAGATGGAAGATTTTGATGCAAACATTGAAGACCAGA
AGGAAGAAAAGAAAGATGCAGAAGAAGAGGAAAGCGAACTGGGTTACATTCCGAAAAGCAAATG
GGAGATGGACACTTCTGAGGCAAAGCTAGACAAGTTGGATGGCTTGAGGACTGGTACTAAAAGG
AAACGAGACTGGGAGGCAATCGCCAGCAGAATGGAGGACTACCTTCAGCTCCCTGATGACTACG
AAACTCGCGCTTCTGAACCTGGGAAGAAGAGGGTGAGATGGGCAGACCTGGAAGAAAAGAAGGA
CGCAGACAGGAAAAGGGCCATAGGTTTTGTGGTCGGGCAGACTGACTGGGAGAAGATCACAGAT
GAGAGCGGCCACCTGGCTGAGAGAGCCCTCAACCGGACCAAATACATATGAGCCTTGGTTTGAA
TGGAGTCACTCCTCTAAGCTGATTCGATTTGAGGTGACCTGAAGCCAAGACCTCCTGAAGCTTC
TTTGTCAGGAAGCTTCTTGTGTCTCCACGTTTCAATCTTGTTTTACCACTTTCATTTTTAAAAG
TTCTCCAGTGTCCCCAAGAAAATTTAGAATCTTGCTCTACCCAAGCAAGACACTGTTAATATTT
TTTTTAACTGATCTGGGGAGGGAGGGTCAGCTTAAGTGCTGAAGTCAGGTGTGGATCCACAGGA
CTCCCAACAAGATTCCCTCCTCTGCACCTGTCACAGACTATCATCATTGCTTGGTGGCCGTTTT
GTTTTTTACTGTATGTAACTAGTAGCTGATTGTACTTGGATTAAAAACAATAAACTTTCACTAT
AAAGCCAATGAGATTCATAGGCTGTACAGCA

hide sequence

RefSeq Acc Id:

XM_039112041 ⟹ XP_038967969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	110,373,371 - 110,449,575 (+)	NCBI
mRatBN7.2	6	104,642,615 - 104,718,508 (+)	NCBI

RefSeq Acc Id:

XM_039112043 ⟹ XP_038967971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	110,373,371 - 110,449,575 (+)	NCBI
mRatBN7.2	6	104,642,615 - 104,718,505 (+)	NCBI

RefSeq Acc Id:

XM_039112044 ⟹ XP_038967972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	110,373,371 - 110,449,575 (+)	NCBI
mRatBN7.2	6	104,642,615 - 104,718,505 (+)	NCBI

RefSeq Acc Id:

XR_010052072

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	110,373,371 - 110,448,833 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258187	(Get FASTA)	NCBI Sequence Viewer
	XP_038967969	(Get FASTA)	NCBI Sequence Viewer
	XP_038967971	(Get FASTA)	NCBI Sequence Viewer
	XP_038967972	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81540	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006492
	ENSRNOP00000070749
	ENSRNOP00000073707
GenBank Protein	P0CB49	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001258187 ⟸ NM_001271258

- UniProtKB:

A0A0G2K678 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYPNWGRYGGSSHYPPPPVPPPPPPVALPEASPGPGYSSSTAPAAPSSSGFMSFREQHLAQLQQ
LQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQM
IHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPSSAQPYLPPAQPSP
SQSPPSQSYLAPTPSYSSSSSSQSYLSHSQPYLPPSQASPSRSSQGPSKPQLPPPPPSIPSGNK
TTIQQEPLETGAKNKNAEQKQAAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGLV
TAKDVPEPIKEEAPVPATSQIAEPLAAEEPPLPPPNEEMPPPLPPEEPQSEDPEEDARLKQLQA
AAAHWQQHQQHRVGFQYQGIMQRHTQLQQILQQYQQVIQHSPHIQTMSLDVQLRHYEMQQQQFQ
RLYQEWEREFQLWEEQLHSYPHKDQLEEYEKQWKSWQGHMRATQTYLQEKVTSFQAVKNQYMGN
MAMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPSTIPPPGMPPPVMPPSLPTSVPPPG
MPPSLSSAVLPPPSLSSAGPPPVLPPPSLSGAPPVLPLPPLSSATPPPGIPPPGVPQGMPPQLT
APVPPASSSQNSQVPEKPRQALLPTPVSFGSTPPSPYHPPPQSEQGNSKPLNKVFSSEQGLGES
SSALSQSVIAAKDTPVKSGGLLADPPKGSFLEGPRGPRFDGPRRFEDLGSRCEGPRPKGPRFEG
NRPDGPRPRYESHPAEGTKSKWGTIPRGPASQFYITPNTSLSPRQSGPQWKGHKATVGQQHQQQ
PKQQPKSQAEPLSGNKEPLADTSSNQQKNLKIQSAAFSISADVKDTKAAQSNENLSNSQQEPPK
SQVSEAPIEPSNWNQNSQSMETEMDKAQGVTQPVSLANKPVPSQSPFPSKVGSMEGGAAVAAAA
LSADDFKPLGVGLSHSENHQEKALPQPDSRENRLEGNKGSSSSYRGPGQNRVEDSRDKGLVNRG
RGQTINRGPGLIKQEDFHDKMLGRREDSREKINKGEGSRDRVFVRPGSSRDKIPGGLQDSQDSR
ANSRERGPPRRAGSQERGPPRRAGSRERVPPQRAGSRERGPPRGPGSRERGLGRPDFGHDRVPF
RPEPGDGGDKMYPYHRDEPSRASWNHGEERGHEEFPLDGRNVPIERERLDDWDRKRYWRECERD
YQDDTLDSYGREDRFSAPPSRPHDGDRRGPWWDDWERDQDMDEGYGREVDRDLDRDVDRIRRPV
DIYDRNVDNEWDRDYGRPLDEQESQFRERDIPSLPPLPPLPPLDRYRDDRWREERNREHGYDRD
FRDRGELRIREYPERGDTWREKRDYVPDRMDWERERLSDRWYPSDAERHSPMAEHMPSSHHSSE
MMGSDANLDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKLKDFGSEPQTADHLPPP
DSRLQNTSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSCVPMTRPPVPIPPPPPPPPPPP
PPPPVIKPKTSSVKQERWDEDSFFGLWDTNDDQGLNSEFKRDTAAIPSAPVLPPPPVHPSIPPP
GPMPMGMPPMSKPPPVQHTVDYGHGRDMPTNKVEQIPYGERITLRPDPLPERSAFDADHAGQRD
RYDRDRDREPYFDRQSNMTDHRDFKRDRETHRDRDRVLDYERDRFDRERRPRDDRNQSYRDKKD
HSSSRRGGFDRPSYDRKSDRPPYEGPPMFGGERRTYPEERMPLPAPSLGHQPPPVPRVEKKPES
KNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFIAEVE
KEEKDPDSGKKVKKKVMEYEYEADMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQF
WSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMAEHWEAAPRHMMRLDIRSLLQDAAI
EEVEMEDFDANIEDQKEEKKDAEEEESELGYIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEA
IASRMEDYLQLPDDYETRASEPGKKRVRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLA
ERALNRTKYI

hide sequence

Ensembl Acc Id:

ENSRNOP00000006492 ⟸ ENSRNOT00000006492

Ensembl Acc Id:

ENSRNOP00000073707 ⟸ ENSRNOT00000080038

Ensembl Acc Id:

ENSRNOP00000070749 ⟸ ENSRNOT00000089683

RefSeq Acc Id:	XP_038967969 ⟸ XM_039112041
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JYQ3 (UniProtKB/TrEMBL), A0A0G2K678 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967971 ⟸ XM_039112043
- Peptide Label:	isoform X2
- UniProtKB:	P0CB49 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038967972 ⟸ XM_039112044
- Peptide Label:	isoform X3
- UniProtKB:	P0CB49 (UniProtKB/Swiss-Prot), F1LQJ1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106986 ⟸ ENSRNOT00000126954

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0CB49-F1-model_v2	AlphaFold	P0CB49	1-1376	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694734

Promoter ID:

EPDNEW_R5259

Type:

initiation region

Name:

Ylpm1_1

Description:

YLP motif containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	108,820,796 - 108,820,856	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564946	AgrOrtholog
BioCyc Gene	G2FUF-36803	BioCyc
Ensembl Genes	ENSRNOG00000027317	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000006492	ENTREZGENE
	ENSRNOT00000080038	ENTREZGENE
	ENSRNOT00000089683	ENTREZGENE
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot
	YLP_motif_con_p1	UniProtKB/Swiss-Prot
NCBI Gene	299199	ENTREZGENE
PANTHER	PTHR13413	UniProtKB/Swiss-Prot
	YLP MOTIF-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	AAA_33	UniProtKB/Swiss-Prot
PhenoGen	Ylpm1	PhenoGen
RatGTEx	ENSRNOG00000027317	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A0A0G2JYQ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K678	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LMM0_RAT	UniProtKB/TrEMBL
	F1LQJ1	ENTREZGENE, UniProtKB/TrEMBL
	P0CB49	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Ylpm1	YLP motif containing 1	RGD1564946_predicted	similar to YLP motif containing protein 1 (Nuclear protein ZAP3) (ZAP113) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564946_predicted	similar to YLP motif containing protein 1 (Nuclear protein ZAP3) (ZAP113) (predicted)	LOC299199	similar to YLP motif containing protein 1 (Nuclear protein ZAP3) (ZAP113)	Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar