Advanced Search (OLGA)

Gene: Atp6ap1l (ATPase H+ transporting accessory protein 1 like) Rattus norvegicus

Analyze

Symbol:

Atp6ap1l

Name:

ATPase H+ transporting accessory protein 1 like

RGD ID:

1564936

Description:

Predicted to enable ATPase activator activity. Predicted to be involved in regulation of cellular pH. Predicted to be located in bounding membrane of organelle and endoplasmic reticulum membrane. Predicted to be part of proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

ATPase, H+ transporting, lysosomal accessory protein 1-like; LOC361875; predicted gene, EG435376; RGD1564936; similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit); similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	23,772,724 - 23,814,913 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	23,772,745 - 23,814,618 (-)	Ensembl				GRCr8
mRatBN7.2	2	22,037,542 - 22,079,376 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	22,037,563 - 22,065,038 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	29,080,928 - 29,108,224 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	27,181,275 - 27,208,573 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	21,997,285 - 22,024,499 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	19,781,375 - 19,809,355 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	19,781,408 - 19,808,937 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	19,657,613 - 19,696,546 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	21,004,512 - 21,032,007 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	18,165,643 - 18,192,478 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diethylstilbestrol (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

nickel atom (ISO)

nitrofen (EXP)

PCB138 (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

rotenone (ISO)

SB 431542 (ISO)

sunitinib (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of cellular pH (IBA)

Cellular Component

membrane (IEA)

proton-transporting V-type ATPase complex (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Atp6ap1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	23,772,724 - 23,814,913 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	23,772,745 - 23,814,618 (-)	Ensembl				GRCr8
mRatBN7.2	2	22,037,542 - 22,079,376 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	22,037,563 - 22,065,038 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	29,080,928 - 29,108,224 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	27,181,275 - 27,208,573 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	21,997,285 - 22,024,499 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	19,781,375 - 19,809,355 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	19,781,408 - 19,808,937 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	19,657,613 - 19,696,546 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	21,004,512 - 21,032,007 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	18,165,643 - 18,192,478 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

ATP6AP1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	82,278,650 - 82,318,806 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	82,295,449 - 82,318,300 (+)	Ensembl			hg38	GRCh38
GRCh37	5	81,574,469 - 81,614,625 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	81,636,922 - 81,649,903 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	77,506,144 - 77,519,126 (+)	NCBI		Celera
Cytogenetic Map	5	q14.2	NCBI
HuRef	5	76,809,650 - 76,822,630 (+)	NCBI		HuRef
CHM1_1	5	81,034,323 - 81,047,320 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	82,764,440 - 82,804,585 (+)	NCBI		T2T-CHM13v2.0

Atp6ap1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	91,031,558 - 91,053,478 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	91,031,552 - 91,053,474 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	90,883,439 - 90,905,355 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	90,883,433 - 90,905,355 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	91,023,054 - 91,044,960 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	91,357,688 - 91,379,594 (-)	NCBI		MGSCv36	mm8
Celera	13	94,511,861 - 94,533,720 (-)	NCBI		Celera
Cytogenetic Map	13	C3	NCBI
cM Map	13	46.45	NCBI

Atp6ap1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955418	28,077,388 - 28,106,183 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100995668
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	32,986,395 - 33,027,746 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	31,140,021 - 31,181,534 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	32,964,011 - 33,004,822 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	33,283,259 - 33,306,354 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	33,280,839 - 33,298,327 (-)	Ensembl			panPan2	panpan1.1

ATP6AP1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	25,168,116 - 25,191,547 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	25,169,058 - 25,436,510 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	26,400,098 - 26,428,076 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	25,079,575 - 25,104,099 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	25,081,649 - 25,121,084 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	25,033,820 - 25,058,324 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	24,998,118 - 25,026,084 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	25,278,838 - 25,306,811 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atp6ap1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	181,063,440 - 181,100,438 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	1,545,940 - 1,562,458 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	1,539,985 - 1,562,286 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP6AP1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	90,680,982 - 90,741,469 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	92,677,083 - 92,720,183 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103224026
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	76,416,536 - 76,440,185 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	76,416,689 - 76,441,754 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	25,274,581 - 25,384,841 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp6ap1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624743	2,674,161 - 2,696,968 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atp6ap1l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	205,325,291 - 205,352,454 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Atp6ap1l
328 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	43
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000044237
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
61368	Mcs1	Mammary carcinoma susceptibility QTL 1	4.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	25054526	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat

Markers in Region

RH142789

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	22,037,624 - 22,037,769 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	19,781,470 - 19,781,614	NCBI	Rnor6.0
Rnor_5.0	2	19,657,708 - 19,657,852	UniSTS	Rnor5.0
RGSC_v3.4	2	21,004,595 - 21,004,739	UniSTS	RGSC3.4
Celera	2	18,165,726 - 18,165,870	UniSTS
Cytogenetic Map	2	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	13	69	185	91	90	59	141	59	6	403	253	22	153	68	88	31	25	25

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044237 ⟹ ENSRNOP00000050073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,800,220 (-)	Ensembl
mRatBN7.2 Ensembl	2	22,037,563 - 22,065,038 (-)	Ensembl
Rnor_6.0 Ensembl	2	19,781,408 - 19,808,937 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127775 ⟹ ENSRNOP00000103211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,814,300 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132094 ⟹ ENSRNOP00000106907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,800,266 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132248 ⟹ ENSRNOP00000104442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,790,354 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144554 ⟹ ENSRNOP00000108078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,800,859 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146394 ⟹ ENSRNOP00000111706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,814,618 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158907 ⟹ ENSRNOP00000103783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,787,595 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159524 ⟹ ENSRNOP00000104249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,800,266 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163563 ⟹ ENSRNOP00000112626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,809,946 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169812 ⟹ ENSRNOP00000106497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	23,772,745 - 23,800,417 (-)	Ensembl

RefSeq Acc Id:

NM_001191843 ⟹ NP_001178772

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,800,220 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,065,038 (-)	NCBI
Rnor_6.0	2	19,781,387 - 19,808,937 (-)	NCBI
Rnor_5.0	2	19,657,613 - 19,696,546 (-)	NCBI
Celera	2	18,165,643 - 18,192,478 (-)	NCBI

Sequence:

show sequence

TGCTTGGCTTGAAGAAGCATACATTTCTTGATGGGAAGAAAACTCTTGTTTAGTTTCTCACTTC
TGTTCTTATGTATGGTGTTTTCAGTCAGTTTGGATCAGATACTTGCCAGGAAGAATGTAGGTTC
TCAAGCATCTTCCAGCAAAGAAGCGATTGTACCGAATGGTCAAAGGAATAGCGGAGAGGTGAAA
CCAGTCCAGAATCTCACAACGGTGCCCATCACACAGACTTTCAACTACAATCTGAGCAAAGCAC
ACTGGAGTACATTCAGCCATCACAATCCTGTTAAGTTCTCCAGGGATGGGATTCCCTGCATCCT
CTTCTGGACAAAAAGAATCACAGTTAAATTTAAGAATCAGACGTGGCTGGACCTCACTGATGAA
GCACTTGGTCAAAACACCACTGTGGACACCGGCAACTCTAACTGCAGCGAGGAAAACGCGGTGT
TGTCTTTAAAGTTTGGTGATGCTGAAAATCCCAAGGATATTGATATAAGGTTCACCCTAAGCAA
TTACATCAAGCTGTCCAGCCAGAGTTGGTTTAGTTTACACCGTGTCGAGATAATTTTCAACAAT
TCGGTGCAAGCAACTTTTAATGCAACCGGTATATATGCTTTGTCAACTTACTCCTACCACTGCC
AACGCGTCAGCAGCCTGCGGCGGAACGATGCGCTCCTGTTGCTTAGCAGCTCAGATGATGTGAC
AAGCCTGTGGGAGGTCACGTTTATTGATTTCCAGATCCAAGGCTTCTCCATCAAGGGGGCACAG
TTTTCTCAGGCTCGAGACTGCAGCTCTTCCTTCTCACCTGCTGTTCTGATTGGCCTGGCCATGT
CTCTGATTCTGTTGCTGGTGTTGGCCTATGCTCTGCATATGCTCATCTACCTGCGCTATCTGGA
CCATCACTACGAGTTCATCACCTCTCCTGCCCACTTCCCATCTCTGAGAGCGCTCGACATAGGG
GAGGAGAAGGAGCTTCTGGGGAGCCAGGGAGCAGAATGCTACGAGCTAAGGAACCAACAGATCT
GCAAAATCTATATTTAGTAACACGAGTCTCCATCTCCTCACCAAGGCCAAATCATCTCCAAAAG
ACATTTTTCTCTTTTGTGATGTCTGACTTGTGAATTGTTTGATTAAAAAAAGAGAAAAAGAAAA
A

hide sequence

RefSeq Acc Id:

XM_039102510 ⟹ XP_038958438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,384 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,076,246 (-)	NCBI

RefSeq Acc Id:

XM_039102511 ⟹ XP_038958439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,384 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,076,246 (-)	NCBI

RefSeq Acc Id:

XM_039102512 ⟹ XP_038958440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,814,266 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,079,062 (-)	NCBI

RefSeq Acc Id:

XM_039102513 ⟹ XP_038958441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,384 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,076,246 (-)	NCBI

RefSeq Acc Id:

XM_039102514 ⟹ XP_038958442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,803,728 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,068,554 (-)	NCBI

RefSeq Acc Id:

XM_039102515 ⟹ XP_038958443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,814,440 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,079,122 (-)	NCBI

RefSeq Acc Id:

XM_039102516 ⟹ XP_038958444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,384 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,076,246 (-)	NCBI

RefSeq Acc Id:

XM_039102517 ⟹ XP_038958445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,384 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,076,246 (-)	NCBI

RefSeq Acc Id:

XM_039102518 ⟹ XP_038958446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,814,267 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,079,089 (-)	NCBI

RefSeq Acc Id:

XM_039102520 ⟹ XP_038958448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,805,540 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,068,828 (-)	NCBI

RefSeq Acc Id:

XM_039102521 ⟹ XP_038958449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,814,913 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,079,376 (-)	NCBI

RefSeq Acc Id:

XM_039102522 ⟹ XP_038958450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,364 (-)	NCBI
mRatBN7.2	2	22,037,542 - 22,076,244 (-)	NCBI

RefSeq Acc Id:

XM_063281999 ⟹ XP_063138069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,384 (-)	NCBI

RefSeq Acc Id:

XM_063282000 ⟹ XP_063138070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,814,231 (-)	NCBI

RefSeq Acc Id:

XM_063282001 ⟹ XP_063138071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	23,772,724 - 23,813,397 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178772	(Get FASTA)	NCBI Sequence Viewer
	XP_038958438	(Get FASTA)	NCBI Sequence Viewer
	XP_038958439	(Get FASTA)	NCBI Sequence Viewer
	XP_038958440	(Get FASTA)	NCBI Sequence Viewer
	XP_038958441	(Get FASTA)	NCBI Sequence Viewer
	XP_038958442	(Get FASTA)	NCBI Sequence Viewer
	XP_038958443	(Get FASTA)	NCBI Sequence Viewer
	XP_038958444	(Get FASTA)	NCBI Sequence Viewer
	XP_038958445	(Get FASTA)	NCBI Sequence Viewer
	XP_038958446	(Get FASTA)	NCBI Sequence Viewer
	XP_038958448	(Get FASTA)	NCBI Sequence Viewer
	XP_038958449	(Get FASTA)	NCBI Sequence Viewer
	XP_038958450	(Get FASTA)	NCBI Sequence Viewer
	XP_063138069	(Get FASTA)	NCBI Sequence Viewer
	XP_063138070	(Get FASTA)	NCBI Sequence Viewer
	XP_063138071	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050073
	ENSRNOP00000050073.4
	ENSRNOP00000103211
	ENSRNOP00000103211.1
	ENSRNOP00000103783.1
	ENSRNOP00000104249.1
	ENSRNOP00000104442.1
	ENSRNOP00000106497.1
	ENSRNOP00000106907.1
	ENSRNOP00000108078
	ENSRNOP00000108078.1
	ENSRNOP00000111706
	ENSRNOP00000111706.1
	ENSRNOP00000112626.1

RefSeq Acc Id:	NP_001178772 ⟸ NM_001191843
- Peptide Label:	precursor
- UniProtKB:	D3ZA00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRKLLFSFSLLFLCMVFSVSLDQILARKNVGSQASSSKEAIVPNGQRNSGEVKPVQNLTTVPI TQTFNYNLSKAHWSTFSHHNPVKFSRDGIPCILFWTKRITVKFKNQTWLDLTDEALGQNTTVDT GNSNCSEENAVLSLKFGDAENPKDIDIRFTLSNYIKLSSQSWFSLHRVEIIFNNSVQATFNATG IYALSTYSYHCQRVSSLRRNDALLLLSSSDDVTSLWEVTFIDFQIQGFSIKGAQFSQARDCSSS FSPAVLIGLAMSLILLLVLAYALHMLIYLRYLDHHYEFITSPAHFPSLRALDIGEEKELLGSQG AECYELRNQQICKIYI hide sequence

Ensembl Acc Id:

ENSRNOP00000050073 ⟸ ENSRNOT00000044237

RefSeq Acc Id:	XP_038958449 ⟸ XM_039102521
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958443 ⟸ XM_039102515
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958446 ⟸ XM_039102518
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958440 ⟸ XM_039102512
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958444 ⟸ XM_039102516
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958441 ⟸ XM_039102513
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958445 ⟸ XM_039102517
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958438 ⟸ XM_039102510
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958439 ⟸ XM_039102511
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958450 ⟸ XM_039102522
- Peptide Label:	isoform X4
- UniProtKB:	D3ZA00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958448 ⟸ XM_039102520
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958442 ⟸ XM_039102514
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063138070 ⟸ XM_063282000
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063138071 ⟸ XM_063282001
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063138069 ⟸ XM_063281999
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000112626 ⟸ ENSRNOT00000163563

Ensembl Acc Id:

ENSRNOP00000103211 ⟸ ENSRNOT00000127775

Ensembl Acc Id:

ENSRNOP00000106497 ⟸ ENSRNOT00000169812

Ensembl Acc Id:

ENSRNOP00000106907 ⟸ ENSRNOT00000132094

Ensembl Acc Id:

ENSRNOP00000104442 ⟸ ENSRNOT00000132248

Ensembl Acc Id:

ENSRNOP00000111706 ⟸ ENSRNOT00000146394

Ensembl Acc Id:

ENSRNOP00000108078 ⟸ ENSRNOT00000144554

Ensembl Acc Id:

ENSRNOP00000103783 ⟸ ENSRNOT00000158907

Ensembl Acc Id:

ENSRNOP00000104249 ⟸ ENSRNOT00000159524

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZA00-F1-model_v2	AlphaFold	D3ZA00	1-336	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564936	AgrOrtholog
BioCyc Gene	G2FUF-54897	BioCyc
Ensembl Genes	ENSRNOG00000040201	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044237	ENTREZGENE
	ENSRNOT00000044237.6	UniProtKB/TrEMBL
	ENSRNOT00000127775	ENTREZGENE
	ENSRNOT00000127775.1	UniProtKB/TrEMBL
	ENSRNOT00000132094.1	UniProtKB/TrEMBL
	ENSRNOT00000132248.1	UniProtKB/TrEMBL
	ENSRNOT00000144554	ENTREZGENE
	ENSRNOT00000144554.1	UniProtKB/TrEMBL
	ENSRNOT00000146394	ENTREZGENE
	ENSRNOT00000146394.1	UniProtKB/TrEMBL
	ENSRNOT00000158907.1	UniProtKB/TrEMBL
	ENSRNOT00000159524.1	UniProtKB/TrEMBL
	ENSRNOT00000163563.1	UniProtKB/TrEMBL
	ENSRNOT00000169812.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.160.110	UniProtKB/TrEMBL
InterPro	ATPase_V1-cplx_s1su	UniProtKB/TrEMBL
	VAS1/VOA1_TM	UniProtKB/TrEMBL
	VAS1_LD	UniProtKB/TrEMBL
KEGG Report	rno:361875	UniProtKB/TrEMBL
NCBI Gene	361875	ENTREZGENE
PANTHER	ATPase_V1_S1	UniProtKB/TrEMBL
	V-TYPE PROTON ATPASE SUBUNIT S1-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Ac45-VOA1_TM	UniProtKB/TrEMBL
	ATP-synt_S1	UniProtKB/TrEMBL
PhenoGen	Atp6ap1l	PhenoGen
RatGTEx	ENSRNOG00000040201	RatGTEx
UniProt	A0ABK0L944_RAT	UniProtKB/TrEMBL
	A0ABK0LBL5_RAT	UniProtKB/TrEMBL
	A0ABK0LGN8_RAT	UniProtKB/TrEMBL
	A0ABK0LLD6_RAT	UniProtKB/TrEMBL
	A0ABK0LPZ3_RAT	UniProtKB/TrEMBL
	A0ABK0LSS9_RAT	UniProtKB/TrEMBL
	A0ABK0LVU6_RAT	UniProtKB/TrEMBL
	A0ABK0M3J8_RAT	UniProtKB/TrEMBL
	A0ABK0M7D2_RAT	UniProtKB/TrEMBL
	D3ZA00	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Atp6ap1l	ATPase H+ transporting accessory protein 1 like	Atp6ap1l	ATPase, H+ transporting, lysosomal accessory protein 1-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-12	Atp6ap1l	ATPase, H+ transporting, lysosomal accessory protein 1-like	RGD1564936	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564936	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit)	RGD1564936_predicted	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-10	RGD1564936_predicted	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (predicted)		similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3) (predicted)	Name updated	1299863	APPROVED
2006-03-07	RGD1564936_predicted	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3) (predicted)	LOC361875	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC361875	similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD