Kctd18 (potassium channel tetramerization domain containing 18) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Kctd18 (potassium channel tetramerization domain containing 18) Rattus norvegicus
Analyze
Symbol: Kctd18
Name: potassium channel tetramerization domain containing 18
RGD ID: 1564820
Description: Predicted to be involved in protein homooligomerization. Orthologous to human KCTD18 (potassium channel tetramerization domain containing 18); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BTB/POZ domain-containing protein KCTD18; LOC301436; potassium channel tetramerisation domain containing 18; RGD1564820; similar to potassium channel tetramerisation domain containing 18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8966,996,440 - 67,061,069 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl966,996,447 - 67,061,069 (-)EnsemblGRCr8
mRatBN7.2959,502,220 - 59,566,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,502,232 - 59,566,857 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx968,002,289 - 68,066,928 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,118,202 - 73,182,841 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,436,305 - 71,500,944 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0964,849,547 - 64,916,652 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,852,289 - 64,916,652 (-)Ensemblrn6Rnor6.0
Rnor_5.0964,649,827 - 64,714,190 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4956,616,134 - 56,680,759 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera956,948,290 - 57,012,301 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Kctd18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8966,996,440 - 67,061,069 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl966,996,447 - 67,061,069 (-)EnsemblGRCr8
mRatBN7.2959,502,220 - 59,566,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,502,232 - 59,566,857 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx968,002,289 - 68,066,928 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,118,202 - 73,182,841 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,436,305 - 71,500,944 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0964,849,547 - 64,916,652 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,852,289 - 64,916,652 (-)Ensemblrn6Rnor6.0
Rnor_5.0964,649,827 - 64,714,190 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4956,616,134 - 56,680,759 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera956,948,290 - 57,012,301 (-)NCBICelera
Cytogenetic Map9q31NCBI
KCTD18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,488,958 - 200,510,068 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,488,956 - 200,519,784 (-)Ensemblhg38GRCh38
GRCh372201,353,681 - 201,374,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,061,926 - 201,083,037 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342201,179,191 - 201,200,298NCBI
Celera2195,108,519 - 195,129,627 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,206,069 - 193,227,176 (-)NCBIHuRef
CHM1_12201,359,660 - 201,380,767 (-)NCBICHM1_1
T2T-CHM13v2.02200,972,443 - 200,993,548 (-)NCBIT2T-CHM13v2.0
Kctd18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39157,994,260 - 58,009,298 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl157,994,260 - 58,058,115 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38157,955,101 - 57,970,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,955,101 - 58,018,956 (-)Ensemblmm10GRCm38
MGSCv37158,011,945 - 58,026,928 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36157,904,600 - 57,914,598 (-)NCBIMGSCv36mm8
Celera158,468,917 - 58,483,900 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.86NCBI
Kctd18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403913,733 - 920,017 (+)Ensembl
ChiLan1.0NW_004955403913,621 - 923,631 (+)NCBIChiLan1.0ChiLan1.0
KCTD18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,111,729 - 103,132,969 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,126,709 - 103,147,919 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B87,742,323 - 87,763,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B205,900,029 - 205,920,776 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,900,032 - 205,920,776 (-)EnsemblpanPan2panpan1.1
KCTD18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,574,407 - 9,593,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,588,386 - 9,596,158 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3710,461,760 - 10,482,875 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0379,474,410 - 9,495,528 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,474,397 - 9,495,713 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,461,767 - 9,481,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,434,021 - 9,453,540 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,433,016 - 9,454,130 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kctd18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,612,152 - 157,631,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936825398,875 - 413,993 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936825396,359 - 415,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,071,268 - 104,099,188 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115104,070,208 - 104,099,300 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,343,268 - 115,371,296 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11085,986,243 - 86,005,518 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1085,987,397 - 86,002,429 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040113,362,357 - 113,453,417 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624889572,064 - 589,386 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Kctd18
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14134,419,634 - 134,432,705 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kctd18
871 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:99
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000029879
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
AA956316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,517,104 - 59,517,235 (+)MAPPERmRatBN7.2
Rnor_6.0964,867,174 - 64,867,304NCBIRnor6.0
Rnor_5.0964,664,712 - 64,664,842UniSTSRnor5.0
RGSC_v3.4956,631,007 - 56,631,137UniSTSRGSC3.4
Celera956,963,168 - 56,963,298UniSTS
RH 3.4 Map9483.1UniSTS
Cytogenetic Map9q31UniSTS
RH129758  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,502,431 - 59,502,646 (+)MAPPERmRatBN7.2
Rnor_6.0964,852,501 - 64,852,715NCBIRnor6.0
Rnor_5.0964,650,039 - 64,650,253UniSTSRnor5.0
RGSC_v3.4956,616,334 - 56,616,548UniSTSRGSC3.4
Celera956,948,490 - 56,948,704UniSTS
RH 3.4 Map9483.6UniSTS
Cytogenetic Map9q31UniSTS
BI293111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,510,964 - 59,511,180 (+)MAPPERmRatBN7.2
Rnor_6.0964,861,034 - 64,861,249NCBIRnor6.0
Rnor_5.0964,658,572 - 64,658,787UniSTSRnor5.0
RGSC_v3.4956,624,867 - 56,625,082UniSTSRGSC3.4
Celera956,957,028 - 56,957,243UniSTS
RH 3.4 Map9483.3UniSTS
Cytogenetic Map9q31UniSTS
BE106490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,514,860 - 59,515,021 (+)MAPPERmRatBN7.2
Rnor_6.0964,864,930 - 64,865,090NCBIRnor6.0
Rnor_5.0964,662,468 - 64,662,628UniSTSRnor5.0
RGSC_v3.4956,628,763 - 56,628,923UniSTSRGSC3.4
Celera956,960,924 - 56,961,084UniSTS
RH 3.4 Map9490.3UniSTS
Cytogenetic Map9q31UniSTS
RH139203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,511,606 - 59,511,753 (+)MAPPERmRatBN7.2
Rnor_6.0964,861,676 - 64,861,822NCBIRnor6.0
Rnor_5.0964,659,214 - 64,659,360UniSTSRnor5.0
RGSC_v3.4956,625,509 - 56,625,655UniSTSRGSC3.4
Celera956,957,670 - 56,957,816UniSTS
RH 3.4 Map9490.4UniSTS
Cytogenetic Map9q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 183 91 90 59 92 59 6 358 193 12 161 82 102 31 27 27

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000029879   ⟹   ENSRNOP00000030486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl966,996,447 - 67,061,069 (-)Ensembl
mRatBN7.2 Ensembl959,502,232 - 59,566,857 (-)Ensembl
Rnor_6.0 Ensembl964,852,301 - 64,916,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092764   ⟹   ENSRNOP00000075987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,859,165 - 64,867,474 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,853,720 - 64,860,692 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092822   ⟹   ENSRNOP00000075940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,852,289 - 64,867,441 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092859   ⟹   ENSRNOP00000075955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,852,301 - 64,867,476 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,853,825 - 64,856,240 (-)Ensembl
RefSeq Acc Id: NM_001106914   ⟹   NP_001100384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,447 - 67,061,069 (-)NCBI
mRatBN7.2959,502,232 - 59,566,857 (-)NCBI
Rnor_6.0964,852,301 - 64,916,652 (-)NCBI
Rnor_5.0964,649,827 - 64,714,190 (-)NCBI
RGSC_v3.4956,616,134 - 56,680,759 (-)RGD
Celera956,948,290 - 57,012,301 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244967   ⟹   XP_006245029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,106 (-)NCBI
mRatBN7.2959,502,231 - 59,517,485 (-)NCBI
Rnor_6.0964,849,547 - 64,867,438 (-)NCBI
Rnor_5.0964,649,827 - 64,714,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767086   ⟹   XP_008765308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,729 (-)NCBI
mRatBN7.2959,502,231 - 59,517,532 (-)NCBI
Rnor_6.0964,849,547 - 64,867,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767087   ⟹   XP_008765309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,035,790 (-)NCBI
mRatBN7.2959,502,231 - 59,520,383 (-)NCBI
Rnor_6.0964,849,547 - 64,870,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596364   ⟹   XP_017451853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,719 (-)NCBI
mRatBN7.2959,502,220 - 59,517,515 (-)NCBI
Rnor_6.0964,849,547 - 64,862,225 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083313   ⟹   XP_038939241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,723 (-)NCBI
mRatBN7.2959,502,220 - 59,517,513 (-)NCBI
RefSeq Acc Id: XM_039083314   ⟹   XP_038939242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,100 (-)NCBI
mRatBN7.2959,502,220 - 59,517,372 (-)NCBI
RefSeq Acc Id: XM_039083315   ⟹   XP_038939243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,713 (-)NCBI
mRatBN7.2959,503,275 - 59,517,518 (-)NCBI
RefSeq Acc Id: XM_063266948   ⟹   XP_063123018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,035,778 (-)NCBI
RefSeq Acc Id: XM_063266949   ⟹   XP_063123019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,042,744 (-)NCBI
RefSeq Acc Id: XM_063266950   ⟹   XP_063123020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,996,440 - 67,011,719 (-)NCBI
RefSeq Acc Id: NP_001100384   ⟸   NM_001106914
- Sequence:
RefSeq Acc Id: XP_006245029   ⟸   XM_006244967
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008765309   ⟸   XM_008767087
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL),   A6IP46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765308   ⟸   XM_008767086
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451853   ⟸   XM_017596364
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000075987   ⟸   ENSRNOT00000092764
Ensembl Acc Id: ENSRNOP00000075955   ⟸   ENSRNOT00000092859
Ensembl Acc Id: ENSRNOP00000075940   ⟸   ENSRNOT00000092822
Ensembl Acc Id: ENSRNOP00000030486   ⟸   ENSRNOT00000029879
RefSeq Acc Id: XP_038939241   ⟸   XM_039083313
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939242   ⟸   XM_039083314
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939243   ⟸   XM_039083315
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123019   ⟸   XM_063266949
- Peptide Label: isoform X1
- UniProtKB: A6IP46 (UniProtKB/TrEMBL),   D4A827 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123018   ⟸   XM_063266948
- Peptide Label: isoform X1
- UniProtKB: A6IP46 (UniProtKB/TrEMBL),   D4A827 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123020   ⟸   XM_063266950
- Peptide Label: isoform X3
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A827-F1-model_v2 AlphaFold D4A827 1-417 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564820 AgrOrtholog
BioCyc Gene G2FUF-27471 BioCyc
Ensembl Genes ENSRNOG00000027091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029879.6 UniProtKB/TrEMBL
Gene3D-CATH Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv_tetra UniProtKB/TrEMBL
  KCTD18_C UniProtKB/TrEMBL
KEGG Report rno:301436 UniProtKB/TrEMBL
NCBI Gene 301436 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD18 UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam K_tetra UniProtKB/TrEMBL
  KCTD18_C UniProtKB/TrEMBL
PhenoGen Kctd18 PhenoGen
RatGTEx ENSRNOG00000027091 RatGTEx
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
UniProt A6IP46 ENTREZGENE, UniProtKB/TrEMBL
  D4A827 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Kctd18  potassium channel tetramerization domain containing 18  Kctd18  potassium channel tetramerisation domain containing 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Kctd18  potassium channel tetramerisation domain containing 18  RGD1564820_predicted  similar to potassium channel tetramerisation domain containing 18 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564820_predicted  similar to potassium channel tetramerisation domain containing 18 (predicted)  LOC301436  similar to potassium channel tetramerisation domain containing 18  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC301436  similar to potassium channel tetramerisation domain containing 18      Symbol and Name status set to provisional 70820 PROVISIONAL