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Gene: Galntl6 (polypeptide N-acetylgalactosaminyltransferase-like 6) Rattus norvegicus

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Symbol:

Galntl6

Name:

polypeptide N-acetylgalactosaminyltransferase-like 6

RGD ID:

1564773

Description:

Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH bisphenol A; copper atom; copper(0).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Galnt17; LOC361142; polypeptide N-acetylgalactosaminyltransferase 17; RGD1564773; similar to GalNAc transferase 10 isoform a; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, Panther, Treefam
Mus musculus (house mouse):	Galntl6 (UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Galntl6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Galntl6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Galntl6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Galntl6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Galntl6 (UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Galntl6 (UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Homo sapiens (human):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6)	Alliance	DIOPT (HGNC\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:ch211-15e22.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-15e22.3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	gly-10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31776	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7304	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7304	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG7579	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7579	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Pgant4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pgant4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pgant6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pgant6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pgant8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	znf414	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	galntl6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Galntl6^{Tn(sb-T2/Bart3)2.311Mcwi}

Genetic Models:

F344-Galntl6^{Tn(sb-T2/Bart3)2.311McwiRrrc}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	36,203,674 - 37,454,709 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	36,204,614 - 37,452,780 (+)	Ensembl				GRCr8
mRatBN7.2	16	31,192,880 - 32,443,979 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	31,186,462 - 32,441,960 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	34,789,710 - 36,042,575 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	38,223,431 - 39,453,912 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	34,410,329 - 35,673,060 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	34,551,052 - 35,803,840 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	35,573,058 - 35,802,979 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	34,380,195 - 35,619,972 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	34,557,663 - 35,853,849 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	31,164,115 - 32,391,302 (+)	NCBI		Celera
Cytogenetic Map	16	p12-p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

dextran sulfate (ISO)

Licochalcone B (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

PCB138 (ISO)

pentanal (ISO)

propanal (ISO)

sulforaphane (ISO)

thiram (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

protein O-linked glycosylation (IBA)

protein O-linked glycosylation via N-acetyl-galactosamine (IEA,ISO)

Cellular Component

Golgi apparatus (IBA)

Golgi membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

glycosyltransferase activity (IEA)

metal ion binding (IEA)

polypeptide N-acetylgalactosaminyltransferase activity (IBA,IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:22186971	PMID:37315345

Genomics

Comparative Map Data

Galntl6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	36,203,674 - 37,454,709 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	36,204,614 - 37,452,780 (+)	Ensembl				GRCr8
mRatBN7.2	16	31,192,880 - 32,443,979 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	31,186,462 - 32,441,960 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	34,789,710 - 36,042,575 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	38,223,431 - 39,453,912 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	34,410,329 - 35,673,060 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	34,551,052 - 35,803,840 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	35,573,058 - 35,802,979 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	34,380,195 - 35,619,972 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	34,557,663 - 35,853,849 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	31,164,115 - 32,391,302 (+)	NCBI		Celera
Cytogenetic Map	16	p12-p11	NCBI

GALNTL6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	171,813,404 - 173,041,559 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	171,812,254 - 173,041,559 (+)	Ensembl			hg38	GRCh38
GRCh37	4	172,734,555 - 173,962,710 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	172,971,229 - 174,199,285 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	170,062,968 - 171,286,585 (+)	NCBI		Celera
Cytogenetic Map	4	q34.1	NCBI
HuRef	4	168,485,006 - 169,708,955 (+)	NCBI		HuRef
CHM1_1	4	172,710,999 - 173,938,017 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	175,165,678 - 176,380,965 (+)	NCBI		T2T-CHM13v2.0

Galntl6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	58,225,523 - 59,366,213 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	58,227,086 - 59,365,674 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	57,772,489 - 58,912,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	57,774,052 - 58,912,640 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	60,255,020 - 61,390,424 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	61,319,636 - 61,803,769 (-)	NCBI		MGSCv36	mm8
Celera	8	60,409,916 - 61,526,480 (-)	NCBI		Celera
Cytogenetic Map	8	B2	NCBI
cM Map	8	30.72	NCBI

Galntl6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	33,920,869 - 34,940,513 (-)	Ensembl
ChiLan1.0	NW_004955403	33,920,850 - 34,941,539 (-)	NCBI	ChiLan1.0	ChiLan1.0

GALNTL6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	169,566,332 - 170,802,323 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	169,946,524 - 171,183,408 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	164,033,081 - 165,270,337 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	176,315,593 - 177,506,548 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	176,492,344 - 177,507,694 (+)	Ensembl			panPan2	panpan1.1

GALNTL6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	22,540,129 - 23,698,714 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	22,541,138 - 23,697,860 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	23,181,504 - 24,346,149 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	22,697,788 - 23,856,830 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	22,698,809 - 23,857,005 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	22,621,466 - 23,805,080 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	22,531,447 - 23,692,294 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	22,687,620 - 23,845,411 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Galntl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	22,836,685 - 23,884,563 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936516	3,252,149 - 4,295,728 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936516	3,251,015 - 4,297,162 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALNTL6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	16,933,292 - 18,143,672 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	16,932,854 - 18,147,724 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	18,851,657 - 19,437,202 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALNTL6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	117,959,017 - 119,158,744 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	97,952,397 - 99,173,168 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Galntl6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	3,383,532 - 4,537,902 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624769	3,382,769 - 4,539,805 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Galntl6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	30,000,483 - 31,121,571 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Galntl6
8459 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	290
Count of miRNA genes:	202
Interacting mature miRNAs:	238
Transcripts:	ENSRNOT00000059580, ENSRNOT00000074353
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	4354822	49354822	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	387123	45387123	Rat
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	387123	45387123	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4234212	49757901	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	28468701	73468701	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39568015	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39568015	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	32361043	77361043	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4234212	53708481	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	31058039	76058039	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	34398294	79398294	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3386790	49757901	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	4744222	49744222	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	31885271	76885271	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	839086	52786090	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	3301683	48301683	Rat

Markers in Region

D16Rat102

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	31,250,969 - 31,251,104 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	34,610,131 - 34,610,265	NCBI	Rnor6.0
Rnor_5.0	16	34,437,827 - 34,437,961	UniSTS	Rnor5.0
RGSC_v3.4	16	34,614,773 - 34,614,907	UniSTS	RGSC3.4
RGSC_v3.4	16	34,614,771 - 34,614,907	RGD	RGSC3.4
Celera	16	31,220,763 - 31,220,897	UniSTS
RGSC_v3.1	16	34,614,846 - 34,614,982	RGD
SHRSP x BN Map	16	12.35	UniSTS
SHRSP x BN Map	16	12.35	RGD
FHH x ACI Map	16	20.0199	RGD
Cytogenetic Map	16	p12-p11	UniSTS

D16Rat19

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	31,951,520 - 31,951,755 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	35,307,110 - 35,307,342	NCBI	Rnor6.0
Rnor_5.0	16	35,126,908 - 35,127,140	UniSTS	Rnor5.0
RGSC_v3.4	16	35,339,929 - 35,340,162	RGD	RGSC3.4
RGSC_v3.4	16	35,339,930 - 35,340,162	UniSTS	RGSC3.4
Celera	16	31,918,000 - 31,918,232	UniSTS
RGSC_v3.1	16	35,340,004 - 35,340,237	RGD
FHH x ACI Map	16	21.0698	RGD
FHH x ACI Map	16	21.0698	UniSTS
Cytogenetic Map	16	p12-p11	UniSTS

BE102110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	31,193,068 - 31,193,274 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	34,552,757 - 34,552,962	NCBI	Rnor6.0
Rnor_5.0	16	34,380,453 - 34,380,658	UniSTS	Rnor5.0
RGSC_v3.4	16	34,556,454 - 34,556,659	UniSTS	RGSC3.4
Celera	16	31,162,906 - 31,163,111	UniSTS
Cytogenetic Map	16	p12-p11	UniSTS

AU048100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	31,951,292 - 31,951,482 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	35,306,882 - 35,307,071	NCBI	Rnor6.0
Rnor_5.0	16	35,126,680 - 35,126,869	UniSTS	Rnor5.0
RGSC_v3.4	16	35,339,702 - 35,339,891	UniSTS	RGSC3.4
Celera	16	31,917,772 - 31,917,961	UniSTS
Cytogenetic Map	16	p12-p11	UniSTS

RH134742

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	48,520,675 - 48,520,874 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	50,137,123 - 50,137,321	NCBI	Rnor6.0
Rnor_5.0	20	51,753,705 - 51,753,903	UniSTS	Rnor5.0
RGSC_v3.4	20	48,989,382 - 48,989,580	UniSTS	RGSC3.4
Celera	16	31,493,101 - 31,493,299	UniSTS
RH 3.4 Map	20	512.8	UniSTS
Cytogenetic Map	16	p12-p11	UniSTS

Genetic Models

This gene Galntl6 is modified in the following models/strains:

F344-Galntl6^{Tn(sb-T2/Bart3)2.311McwiRrrc}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	2	21	143	33	35	10	12	10	6	112	52	3	127	37	49	25	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059580 ⟹ ENSRNOP00000056338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	35,573,058 - 35,802,979 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000074353 ⟹ ENSRNOP00000066967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	31,740,966 - 31,852,817 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109059 ⟹ ENSRNOP00000083243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	36,204,614 - 37,452,780 (+)	Ensembl
mRatBN7.2 Ensembl	16	31,186,462 - 32,441,960 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127396 ⟹ ENSRNOP00000103348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	37,431,989 - 37,452,780 (+)	Ensembl

RefSeq Acc Id:

NM_001135756 ⟹ NP_001129228

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	36,205,082 - 37,451,670 (+)	NCBI
mRatBN7.2	16	31,194,278 - 32,440,940 (+)	NCBI
Rnor_6.0	16	34,553,966 - 35,802,982 (+)	NCBI
Rnor_5.0	16	34,380,195 - 35,619,972 (+)	NCBI
RGSC_v3.4	16	34,557,663 - 35,853,849 (+)	RGD
Celera	16	31,164,115 - 32,391,302 (+)	RGD

Sequence:

show sequence

GAACCCTGCAGATTGGTGCTGAGCACACAACAAAAGTTTGTAGCTTCCCCTCAGTTTCTGGTGC
TTCCCGGGAAAGAGGAAAGGACTTTGGCATTAAACACAAGAAGCAGTCTGGGAGTCATCTCTAA
CTTTTCTCCACTGTTATCATTTGCAATGAAGAGGAAACAGAAAAGGTTTCTGCAAATGACTTTG
TTATTCACTGTGGCTTTAATTTTCCTGCCCAACATTGGTCTCTGGTCTTTGTACAAGGATAAAC
ATCTGATGAAATCTGCAGAACCCGCGGAACATCAGACATTTCCACTGGGCCTAGGCGATGGGCA
ATTCTATTCCTGGACAGATGGTCTGAGAAGAAAAGACTGGCATGACTATGTGAGCATTCAGAAA
GATGCTTTGCGCTCAGGGAAAGGTGAGCATGGAAAACCATACCCCCTTACTGAAGAGGACCATG
ATGACTCAGCTTACAGGGAAAATGGCTTCAATATTTTTGTCAGCAACAATATTGCTCTAGAGAG
GTCTCTGCCAGACATCCGCCATGCTAACTGTAAGCACAAGATGTACCTTGAAAGGCTGCCAAAC
ACCAGCATCATTATCCCATTTCACAATGAAGGCTGGACCTCACTCTTGCGGACCATACACAGTA
TAATCAACCGGACACCGGAGAGTCTGATAGCAGAAATAATTCTAGTCGATGACTTCAGTGATAG
AGAACACTTGAAAGATAAATTAGAAGATTACATGGCTCGATTTCCCATAGTGAGAATTGTGCGC
ACCAAGAAAAGGGAGGGACTCATCCGGACCCGACTCCTGGGAGCTTCTGTGGCCAGAGGCGAGG
TGCTGACCTTCCTGGACTCCCATTGTGAGGTCAATGTGAACTGGCTGCCCCCTCTCCTCAACCA
AATTGCACTAAACCACAAAACCATCGTGTGTCCCATGATCGATGTCATTGACCACAGTCACTTT
GGGTACGAGGCACAAGCTGGGGATGCCATGCGAGGAGCCTTCGACTGGGAAATGTACTACAAAA
GAATCCCCATCCCTCCAGAGCTCCAGCGGGCTGATCCCAGCGAGCCTTTTGAGTCTCCTGTTAT
GGCTGGAGGTCTCTTTGCAGTGGATCGAAAGTGGTTTTGGGAACTGGGTGGCTATGACCCAGGC
TTAGAAATCTGGGGAGGAGAGCAGTATGAAATCTCTTTTAAGGTTTGGATGTGCGGAGGAGAAA
TGTTCGATGTTCCATGTTCTAGAGTCGGTCATATCTACAGGAAGTATGTCCCTTATAAAGTTCC
GTCTGGGACTAGCCTGGCAAGGAACCTGAAGCGCGTGGCTGAGACCTGGATGGATGAATTTGCT
GAGTACATTTACCAGCGGCGGCCAGAGTACAGGCACCTCTCCACCGGAGACATCTCTGCCCAGA
AGGAGTTGCGGAAACGACTTAAGTGCAAAGACTTCAAATGGTTCATGGCTGCGGTGGCCTGGGA
TGTGCCGAAGTACTACCCTCCGGTCGAGCCCCTGCCTGCGGCATGGGGTGAGATTCGAAATGTG
GCAGCAAACTTATGTGTGGATAGCAAGCATGGAGCCATGGGGACCGAACTGAGGCTGGACATCT
GTGTGAAGGATGGTTCCGAAAGGACATGGTCTCACGAACAGCTCTTTACTTTCGGGTGGAGAGA
AGATATTCGACCTGGTGAGCCTCTGCACACCCGAAAATTCTGCTTGGATGCCATCTCACACAGC
AGCCCTGTCACCCTCTACGACTGTCACGGCATGAAAGGCAACCAGCTCTGGGGATACCGGGAGG
ACAGAACATTATTCCATCCCGTGAGCAACAGCTGTATGGACTGCAACCCTGCAGAGAAGAAGGT
TTTCATGGCCAGATGTGACCCTCTGTCCGAGACTCAGCAGTGGATGTTTGAACACATCAACATG
ACTGTTTTAGAAAAAATTAGCCATTATGCCATCTCCTAG

hide sequence

RefSeq Acc Id:

XM_017600182 ⟹ XP_017455671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	36,203,674 - 37,454,709 (+)	NCBI
mRatBN7.2	16	31,192,880 - 32,443,979 (+)	NCBI
Rnor_6.0	16	34,551,052 - 35,803,840 (+)	NCBI

Sequence:

show sequence

TATTTATAAATATACATTAAAAGAGATGTTATTCTGGCGTCTACCTTGTGTACTGGCCACGAGA
CAAATGATGAGACATGCTCACTGTTGGTAATTTTAATCTGTGACTGGAGACTGTATTCAGGTTC
ATCTACCGACACTTAAATGGGACATGTTACCCAATTCCACATCCCGGGATTGCAGATAATTCTA
TCTGCGTATTGCTACATCTGATTGAGGATTCTTGATAAGGAGTAAAAGAAGAGGTATTGCTTAA
AATATTGTTTTTATTATTTAATAGCAAAACACTTTTAAGCCCCTCCAATTCATCAGTACTAACT
GTATCCAAAAGTGAAGAAATATTCCATAAACCTTAGTTCTCCAAACACCTTTTCTTGCCTGTTA
ATTTATTCCAAAATACCTCTCCCCTAGTACATGCCTTCAAATTCTTCTGTTCTAGAACTCCTTT
AACTCAGATAAGAAGAAAGGGATTTGAAAATTACGCAGAACGACTCAAGTGACTGGTCAGGTGA
CTGTGAGTGGTTTGGGAACAGTGATAAAACCCTCTTCCCTCTGCATTTTTCAAATTGCACCTGT
GTAAAACGTAAAGGAAACTTCTTTTACTTACAGAAAGGACACATTCAAAATATTGATTCAGTGT
GTTTTGAAACTGTTCTGAGATGGCAAGTCATCCACAGAGAACAAGTACTTACAACATAAAGCTT
TATTTGTGTAGTCAAACAGCCAATCTTTTTTTGTTCCAGTCTGTTTTGTCTTAAATGCATATCC
TTAAGAGTTTAAGGCTTAACTCTCCAAGATCAAATCAGAATCTTGAGAGGCTAGAGCCCTGGTG
GCTAGAGAAGACAGGGGGAAGAGAAAAAAAGGCGTGGGAGGAAAATGAGAGAGAGGGCGGAAGG
AAAAAAAGAGGATGAAGGAGAAGGTCGTCTGGAGTGTAGTCTTTATATCTCAAGCATATGGGCA
TCACCCTCTAGACTGTAACAAAGAGGTGATCACGATGTTTTGGGAGGCTCTGGACAGACTGACG
CTGCGCGCGGCTTGGCATGCCCAATCATCCCCTTACTTAAGTTCACACCGAGAGTTAGGCGCTC
TGGATCCTGTGCCAGGCAGGCACACAGGTTCCTTAGAGAGGCCACAGGTTTTCCTGTGTGTGTT
GAATCAGTTTTCTACGGGGAAGGAAGGGTCCCATCTGGTAAACTTACTCAGTTCTAAGGTTTCT
GGCTAACCAGCGAGGTGTGTGTGAGCTCAGCCAGGGACCGGCAGACCTCTCAGCTATAAGCAGC
AGGAGGTGCAGGCATGCTAGGGCGGGGAAGCATCAGTTAGTGAAGCCAAAGCTTAACCTGGGCC
CCAGGTGCTGGCGGACTCCAGCGGAGCTGCCTCTGCTCTCCACTGTGTTGTCTGGAAGCTGCGG
CTAGCAAATCGGTCCACGCGTGGGGATCCTCTTCCTCTCTCCACGCTACGTACCTGGCTTGAGC
TGTAGGTTCTGGGGGAACCCTCCTCTCAGGGACCAGTCCAGACTGGGTTGCCTCTGCTCACTGT
CGCTGCCGCTGCCGCTGCCGCGCCTGCCTCGCTGCGATCTGATCAGGACCATGGAGGAATTCTT
CCATTGCCCTCCCACTCGGGGCGACTTAGACTCTGGAATTTCTGGCCTGGCGCCTTTCGGGTGA
GCTCAGAGATGAACCGGTCTGCCTACCAGTTCGAGATTACCCGAGAAGAGAGGATCCGATTGTC
CCGGAGCTGCAAATCCATTTCTCCTTCTCTGCTTTCATCCTCCTTTCCTTCCCCCTAGCCTCCA
GGTTTGTTTATATAGCACCTGGCAGCCGGGAGGCAGTGGCCACTACCTTCCTGCCGCGGCTCGC
CCACCCCTCCCGGCCTCTAGGCTCCCGCACGTGGTAGACACCAGTATCGTCGCCAGCAGGCAGG
AGACAGCCAGCGGGAGGCGGCCGCCTGGGTGCCAGCTCCACGCGCGTTCTCGCCATCCTCACTC
ATCCTCAGCGCGCACTCTCCCACTTGCCTGTAAAGCCCTGTCACACTTGACATTCGCCGCCTGC
CATCCGTCCCTTGACGCGAAGTGGAGATCGGAAATACAGCCCTGGGGGTGCTGGTGATGCTTCG
CTGGGTTCGTTCAGTTGCTGGAAAAGAATGGTAACATGAACAGTGGAGCGTGAGAGCGTCGGCA
CAGGAAGGGGACTAGATTGATGGGCAGAGAACACACTTCTCTGAGGATCTCATTCCCAGGACTG
CGCGAGGAAGGGACATCTTTGCGCCTACACTTCCTGGCTGGACTCTGCTGACATCTGTAGCCTC
CTTTCTGCCAGGTTCCCAGGTCGCCTAGATGCTGCCTGCAGCGGAGTGTTCTGACAGCGCATGA
GGATCCAGGAGTTTGTGAACCCCTATCCAAACTAGTTCTGACCTGGTTATGGTGTCCCTGGATC
CTGAGTGACAAGCTGACTCCAGAGGGAGTTGAACTTGAGTTCAGATGGCCAACTCCCTCTGAAC
CCTGCAGATTGGTGCTGAGCACACAACAAAAGTTTGTAGCTTCCCCTCAGTTTCTGGTGCTTCC
CGGGAAAGAGGAAAGGACTTTGGCATTAAACACAAGAAGCAGTCTGGGAGTCATCTCTAACTTT
TCTCCACTGTTATCATTTGCAATGAAGAGGAAACAGAAAAGGTTTCTGCAAATGACTTTGTTAT
TCACTGTGGCTTTAATTTTCCTGCCCAACATTGGTCTCTGGTCTTTGTACAAGGATAAACATCT
GATGAAATCTGCAGAACCCGCGGAACATCAGACATTTCCACTGGGCCTAGGCGATGGGCAATTC
TATTCCTGGACAGATGGTCTGAGAAGAAAAGACTGGCATGACTATGTGAGCATTCAGAAAGATG
CTTTGCGCTCAGGGAAAGGTGAGCATGGAAAACCATACCCCCTTACTGAAGAGGACCATGATGA
CTCAGCTTACAGGGAAAATGGCTTCAATATTTTTGTCAGCAACAATATTGCTCTAGAGAGGTCT
CTGCCAGACATCCGCCATGCTAACTGTAAGCACAAGATGTACCTTGAAAGGCTGCCAAACACCA
GCATCATTATCCCATTTCACAATGAAGGCTGGACCTCACTCTTGCGGACCATACACAGTATAAT
CAACCGGACACCGGAGAGTCTGATAGCAGAAATAATTCTAGTCGATGACTTCAGTGATAGAGAA
CACTTGAAAGATAAATTAGAAGATTACATGGCTCGATTTCCCATAGTGAGAATTGTGCGCACCA
AGAAAAGGGAGGGACTCATCCGGACCCGACTCCTGGGAGCTTCTGTGGCCAGAGGCGAGGTGCT
GACCTTCCTGGACTCCCATTGTGAGGTCAATGTGAACTGGCTGCCCCCTCTCCTCAACCAAATT
GCACTAAACCACAAAACCATCGTGTGTCCCATGATCGATGTCATTGACCACAGTCACTTTGGGT
ACGAGGCACAAGCTGGGGATGCCATGCGAGGAGCCTTCGACTGGGAAATGTACTACAAAAGAAT
CCCCATCCCTCCAGAGCTCCAGCGGGCTGATCCCAGCGAGCCTTTTGAGTCTCCTGTTATGGCT
GGAGGTCTCTTTGCAGTGGATCGAAAGTGGTTTTGGGAACTGGGTGGCTATGACCCAGGCTTAG
AAATCTGGGGAGGAGAGCAGTATGAAATCTCTTTTAAGGTTTGGATGTGCGGAGGAGAAATGTT
CGATGTTCCATGTTCTAGAGTCGGTCATATCTACAGGAAGTATGTCCCTTATAAAGTTCCGTCT
GGGACTAGCCTGGCAAGGAACCTGAAGCGCGTGGCTGAGACCTGGATGGATGAATTTGCTGAGT
ACATTTACCAGCGGCGGCCAGAGTACAGGCACCTCTCCACCGGAGACATCTCTGCCCAGAAGGA
GTTGCGGAAACGACTTAAGTGCAAAGACTTCAAATGGTTCATGGCTGCGGTGGCCTGGGATGTG
CCGAAGTACTACCCTCCGGTCGAGCCCCTGCCTGCGGCATGGGGTGAGATTCGAAATGTGGCAG
CAAACTTATGTGTGGATAGCAAGCATGGAGCCATGGGGACCGAACTGAGGCTGGACATCTGTGT
GAAGGATGGTTCCGAAAGGACATGGTCTCACGAACAGCTCTTTACTTTCGGGTGGAGAGAAGAT
ATTCGACCTGGTGAGCCTCTGCACACCCGAAAATTCTGCTTGGATGCCATCTCACACAGCAGCC
CTGTCACCCTCTACGACTGTCACGGCATGAAAGGCAACCAGCTCTGGGGATACCGGGAGGACAG
AACATTATTCCATCCCGTGAGCAACAGCTGTATGGACTGCAACCCTGCAGAGAAGAAGGTTTTC
ATGGCCAGATGTGACCCTCTGTCCGAGACTCAGCAGTGGATGTTTGAACACATCAACATGACTG
TTTTAGAAAAAATTAGCCATTATGCCATCTCCTAGAAAAGAAAGAAGAGCGATTACCTACAGGT
TGTGAACTGTGTTGTTGCAGGCATCTGGATCAAAGGAGTCAGGAATAACATTTCCTAGATCCAG
GAAGCCTGGTTGAAAGACGTGTGAAGGCCATGTTGACGTAGGCTGTCCGGGAGAAGTTCCTGCA
TCTGAAGAACTTGGCTGAGATCCTCACCAGCTGCTTCTGAGAACTGAGACTAGCAGTTCCCTTG
CTGGCCAAGGGTAAAGATTACTTAGGAACTTTCACCTCGACTGCTGAGTTAATCAACCCTAGCA
TTTCTCAGGTCAAATCCTGCAGTAGTGAGTAGCTATGAATGGATCCTATTAATCGGGTGGGAGG
GGGGTGGAAACAGAGCGCATGACTGCTCTGGCAACCTGAGGCTACCACAGGTCTAGAACTAGCC
ACGCTTAAGGGGTGAGCTGTACTCTTTGGTGCCATTCTCTAAGAGTGGGTTAAGCAGGTTTAAC
CCTTTCAAGTGCTGCAGATGATTTTAGAGTGCTCATGCCATTTTTCTCTTTCCTTTTGTCTTCT
CTTTAAACAAGGGTACATGACGTTGAAAACTTACACTACATACTCTCATCTACACATACTCTTT
TCCTTCAAAGGCCCATGTTATCTGTCATGGTTCATTAGAGCTCATGGTTCACCAATTAGCTGAA
GTTCTAATCCAGTGACCTTAGATGAATCCAGTTAGAAACAAAAACAGACCAACAAAACCTATGC
TACCAGGTTACTCCAAAGAAAGATTTCACATAAGCAACAAAATATCCCAAGCACCCACACACAT
ACACACACACACACACACACACACACACACATACACTCACACACACTCACACACACGCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001129228	(Get FASTA)	NCBI Sequence Viewer
	NP_001423504	(Get FASTA)	NCBI Sequence Viewer
	XP_017455671	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87175	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000083243
	ENSRNOP00000083243.1
	ENSRNOP00000103348.1

RefSeq Acc Id:

NP_001129228 ⟸ NM_001135756

- UniProtKB:

A0A8I5ZYW6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKRKQKRFLQMTLLFTVALIFLPNIGLWSLYKDKHLMKSAEPAEHQTFPLGLGDGQFYSWTDGL
RRKDWHDYVSIQKDALRSGKGEHGKPYPLTEEDHDDSAYRENGFNIFVSNNIALERSLPDIRHA
NCKHKMYLERLPNTSIIIPFHNEGWTSLLRTIHSIINRTPESLIAEIILVDDFSDREHLKDKLE
DYMARFPIVRIVRTKKREGLIRTRLLGASVARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTI
VCPMIDVIDHSHFGYEAQAGDAMRGAFDWEMYYKRIPIPPELQRADPSEPFESPVMAGGLFAVD
RKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARN
LKRVAETWMDEFAEYIYQRRPEYRHLSTGDISAQKELRKRLKCKDFKWFMAAVAWDVPKYYPPV
EPLPAAWGEIRNVAANLCVDSKHGAMGTELRLDICVKDGSERTWSHEQLFTFGWREDIRPGEPL
HTRKFCLDAISHSSPVTLYDCHGMKGNQLWGYREDRTLFHPVSNSCMDCNPAEKKVFMARCDPL
SETQQWMFEHINMTVLEKISHYAIS

hide sequence

RefSeq Acc Id:

XP_017455671 ⟸ XM_017600182

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKRKQKRFLQMTLLFTVALIFLPNIGLWSLYKDKHLMKSAEPAEHQTFPLGLGDGQFYSWTDGL
RRKDWHDYVSIQKDALRSGKGEHGKPYPLTEEDHDDSAYRENGFNIFVSNNIALERSLPDIRHA
NCKHKMYLERLPNTSIIIPFHNEGWTSLLRTIHSIINRTPESLIAEIILVDDFSDREHLKDKLE
DYMARFPIVRIVRTKKREGLIRTRLLGASVARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTI
VCPMIDVIDHSHFGYEAQAGDAMRGAFDWEMYYKRIPIPPELQRADPSEPFESPVMAGGLFAVD
RKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARN
LKRVAETWMDEFAEYIYQRRPEYRHLSTGDISAQKELRKRLKCKDFKWFMAAVAWDVPKYYPPV
EPLPAAWGEIRNVAANLCVDSKHGAMGTELRLDICVKDGSERTWSHEQLFTFGWREDIRPGEPL
HTRKFCLDAISHSSPVTLYDCHGMKGNQLWGYREDRTLFHPVSNSCMDCNPAEKKVFMARCDPL
SETQQWMFEHINMTVLEKISHYAIS

hide sequence

Ensembl Acc Id:

ENSRNOP00000056338 ⟸ ENSRNOT00000059580

Ensembl Acc Id:

ENSRNOP00000066967 ⟸ ENSRNOT00000074353

Ensembl Acc Id:

ENSRNOP00000083243 ⟸ ENSRNOT00000109059

Ensembl Acc Id:

ENSRNOP00000103348 ⟸ ENSRNOT00000127396

Protein Domains

Ricin B lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTT8-F1-model_v2	AlphaFold	D3ZTT8	1-436	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564773	AgrOrtholog
BioCyc Gene	G2FUF-11554	BioCyc
Ensembl Genes	ENSRNOG00000038976	Ensembl
	ENSRNOG00000067282	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000109059	ENTREZGENE
	ENSRNOT00000109059.2	UniProtKB/TrEMBL
	ENSRNOT00000127396.1	UniProtKB/TrEMBL
Gene3D-CATH	2.80.10.50	UniProtKB/TrEMBL
	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
InterPro	GalNAc-T	UniProtKB/TrEMBL
	Glyco_trans_2-like	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
	Ricin_B-like_lectins	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
KEGG Report	rno:361142	UniProtKB/TrEMBL
NCBI Gene	361142	ENTREZGENE
PANTHER	N-ACETYLGALACTOSAMINYLTRANSFERASE	UniProtKB/TrEMBL
	POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE-LIKE 6	UniProtKB/TrEMBL
Pfam	Glycos_transf_2	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
PhenoGen	Galntl6	PhenoGen
PROSITE	RICIN_B_LECTIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000038976	RatGTEx
	ENSRNOG00000067282	RatGTEx
SMART	RICIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50370	UniProtKB/TrEMBL
	SSF53448	UniProtKB/TrEMBL
UniProt	A0A8I5ZYW6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LFB2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-12-01	Galntl6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	RGD1564773	similar to GalNAc transferase 10 isoform a	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564773	similar to GalNAc transferase 10 isoform a	RGD1564773_predicted	similar to GalNAc transferase 10 isoform a (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564773_predicted	similar to GalNAc transferase 10 isoform a (predicted)	LOC361142	similar to GalNAc transferase 10 isoform a	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC361142	similar to GalNAc transferase 10 isoform a			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)