Nr6a1 (nuclear receptor subfamily 6, group A, member 1) - Rat Genome Database

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Gene: Nr6a1 (nuclear receptor subfamily 6, group A, member 1) Rattus norvegicus
Analyze
Symbol: Nr6a1
Name: nuclear receptor subfamily 6, group A, member 1
RGD ID: 1564740
Description: Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; estrogen response element binding activity; and protein homodimerization activity. Predicted to be involved in gamete generation; positive regulation of mesenchymal stem cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in chromatin and nucleus. Orthologous to human NR6A1 (nuclear receptor subfamily 6 group A member 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gcnf; germ cell nuclear factor; nuclear receptor subfamily 6 group A member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,904,832 - 43,094,622 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl342,904,832 - 43,092,951 (-)EnsemblGRCr8
mRatBN7.2322,495,109 - 22,683,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,496,943 - 22,683,131 (-)EnsemblmRatBN7.2
Rnor_6.0323,029,222 - 23,218,050 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)Ensemblrn6Rnor6.0
Rnor_5.0328,253,752 - 28,311,777 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,533,072 - 18,564,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera320,928,332 - 20,987,223 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7835709   PMID:7854358   PMID:9025060   PMID:9099702   PMID:11702949   PMID:12381721   PMID:15064830   PMID:16166633   PMID:26546462  


Genomics

Comparative Map Data
Nr6a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,904,832 - 43,094,622 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl342,904,832 - 43,092,951 (-)EnsemblGRCr8
mRatBN7.2322,495,109 - 22,683,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,496,943 - 22,683,131 (-)EnsemblmRatBN7.2
Rnor_6.0323,029,222 - 23,218,050 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)Ensemblrn6Rnor6.0
Rnor_5.0328,253,752 - 28,311,777 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4318,533,072 - 18,564,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera320,928,332 - 20,987,223 (-)NCBICelera
Cytogenetic Map3q12NCBI
NR6A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,517,275 - 124,771,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,517,275 - 124,771,311 (-)Ensemblhg38GRCh38
GRCh379127,279,554 - 127,533,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,324,524 - 126,573,397 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349124,364,256 - 124,613,130NCBI
Celera997,931,920 - 98,181,465 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,892,079 - 97,146,297 (-)NCBIHuRef
CHM1_19127,428,491 - 127,682,467 (-)NCBICHM1_1
T2T-CHM13v2.09136,715,509 - 136,969,568 (-)NCBIT2T-CHM13v2.0
Nr6a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,613,381 - 38,816,464 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,613,382 - 38,817,700 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38238,723,369 - 38,926,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,723,370 - 38,927,688 (-)Ensemblmm10GRCm38
MGSCv37238,578,894 - 38,781,981 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36238,545,379 - 38,749,697 (-)NCBIMGSCv36mm8
Celera240,447,561 - 40,650,237 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Nr6a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,425,790 - 3,619,285 (+)Ensembl
ChiLan1.0NW_0049554193,425,406 - 3,624,315 (+)NCBIChiLan1.0ChiLan1.0
NR6A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,584,131 - 14,838,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,586,313 - 14,840,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,641,303 - 95,892,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,159,277 - 124,236,706 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,164,707 - 124,372,104 (-)EnsemblpanPan2panpan1.1
Nr6a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,008,930 - 193,226,426 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648712,775,197 - 12,995,091 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648712,775,864 - 12,994,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR6A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,322,039 - 265,370,026 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11265,320,597 - 265,570,941 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,188,178 - 299,395,773 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21299,074,852 - 299,106,574 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NR6A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,373,445 - 13,626,234 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660792,448,515 - 2,704,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr6a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,391,881 - 10,590,430 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476010,383,216 - 10,594,919 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nr6a1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1516,495,284 - 16,678,853 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nr6a1
1617 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:345
Count of miRNA genes:102
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000018751, ENSRNOT00000072113, ENSRNOT00000074794
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH143052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,504,702 - 22,504,984 (+)MAPPERmRatBN7.2
Rnor_6.0323,038,816 - 23,039,097NCBIRnor6.0
Rnor_5.0328,263,343 - 28,263,624UniSTSRnor5.0
RGSC_v3.4318,538,113 - 18,538,394UniSTSRGSC3.4
Celera320,937,926 - 20,938,207UniSTS
RH 3.4 Map3236.4UniSTS
Cytogenetic Map3q11UniSTS
RH138284  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map3237.31UniSTS
Cytogenetic Map3q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
18 13 76 202 91 90 59 135 59 6 434 245 13 189 104 117 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ783965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018751   ⟹   ENSRNOP00000018751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl342,904,832 - 42,962,446 (-)Ensembl
mRatBN7.2 Ensembl322,496,943 - 22,552,877 (-)Ensembl
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110680   ⟹   ENSRNOP00000076447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl342,904,832 - 43,092,951 (-)Ensembl
mRatBN7.2 Ensembl322,496,943 - 22,683,131 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000136024   ⟹   ENSRNOP00000105037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl342,904,832 - 43,092,923 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155189   ⟹   ENSRNOP00000106729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl342,904,832 - 43,092,923 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156435   ⟹   ENSRNOP00000108372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl342,904,832 - 43,092,851 (-)Ensembl
RefSeq Acc Id: NM_001100861   ⟹   NP_001094331
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,092,837 (-)NCBI
RefSeq Acc Id: XM_039106241   ⟹   XP_038962169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106242   ⟹   XP_038962170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106243   ⟹   XP_038962171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106244   ⟹   XP_038962172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106245   ⟹   XP_038962173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 43,094,622 (-)NCBI
mRatBN7.2322,495,109 - 22,683,132 (-)NCBI
RefSeq Acc Id: XM_039106246   ⟹   XP_038962174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 42,972,193 (-)NCBI
mRatBN7.2322,495,109 - 22,554,275 (-)NCBI
RefSeq Acc Id: XM_063284078   ⟹   XP_063140148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,914,303 - 43,094,622 (-)NCBI
RefSeq Acc Id: XM_063284079   ⟹   XP_063140149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,904,832 - 42,972,196 (-)NCBI
Ensembl Acc Id: ENSRNOP00000018751   ⟸   ENSRNOT00000018751
RefSeq Acc Id: XP_038962171   ⟸   XM_039106243
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962173   ⟸   XM_039106245
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038962172   ⟸   XM_039106244
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962170   ⟸   XM_039106242
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962169   ⟸   XM_039106241
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962174   ⟸   XM_039106246
- Peptide Label: isoform X7
- UniProtKB: E9PSV7 (UniProtKB/TrEMBL),   A6JEV3 (UniProtKB/TrEMBL),   A6JEV2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000076447   ⟸   ENSRNOT00000110680
RefSeq Acc Id: NP_001094331   ⟸   NM_001100861
- UniProtKB: A6JEV2 (UniProtKB/TrEMBL),   A0A8I5Y5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140149   ⟸   XM_063284079
- Peptide Label: isoform X8
- UniProtKB: A6JEV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140148   ⟸   XM_063284078
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000105037   ⟸   ENSRNOT00000136024
Ensembl Acc Id: ENSRNOP00000108372   ⟸   ENSRNOT00000156435
Ensembl Acc Id: ENSRNOP00000106729   ⟸   ENSRNOT00000155189
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PSV7-F1-model_v2 AlphaFold E9PSV7 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564740 AgrOrtholog
BioCyc Gene G2FUF-49905 BioCyc
Ensembl Genes ENSRNOG00000013232 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018751 ENTREZGENE
  ENSRNOT00000018751.9 UniProtKB/TrEMBL
  ENSRNOT00000110680 ENTREZGENE
  ENSRNOT00000110680.2 UniProtKB/TrEMBL
  ENSRNOT00000136024 ENTREZGENE
  ENSRNOT00000136024.1 UniProtKB/TrEMBL
  ENSRNOT00000155189 ENTREZGENE
  ENSRNOT00000155189.1 UniProtKB/TrEMBL
  ENSRNOT00000156435.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hormone_rcpt_NR3 UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
NCBI Gene 362125 ENTREZGENE
PANTHER KNIRPS-RELATED PROTEIN-RELATED UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PhenoGen Nr6a1 PhenoGen
PRINTS STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013232 RatGTEx
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF48508 UniProtKB/TrEMBL
UniProt A0A8I5Y5U9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LCE5_RAT UniProtKB/TrEMBL
  A0ABK0LNZ0_RAT UniProtKB/TrEMBL
  A0ABK0LU24_RAT UniProtKB/TrEMBL
  A6JEV2 ENTREZGENE, UniProtKB/TrEMBL
  A6JEV3 ENTREZGENE, UniProtKB/TrEMBL
  E9PSV7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Nr6a1  nuclear receptor subfamily 6, group A, member 1      Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 Nr6a1  nuclear receptor subfamily 6, group A, member 1      Symbol and Name status set to provisional 70820 PROVISIONAL