Naa11 (N(alpha)-acetyltransferase 11, NatA catalytic subunit) - Rat Genome Database

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Pathways
Gene: Naa11 (N(alpha)-acetyltransferase 11, NatA catalytic subunit) Rattus norvegicus
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Symbol: Naa11
Name: N(alpha)-acetyltransferase 11, NatA catalytic subunit
RGD ID: 1564723
Description: Predicted to enable protein N-terminal-serine acetyltransferase activity and protein-N-terminal-glutamate acetyltransferase activity. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NatA complex. Orthologous to human NAA11 (N-alpha-acetyltransferase 11, NatA catalytic subunit); INTERACTS WITH acetamide; C60 fullerene; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha-N-acetyltransferase 1B; ARD1 homolog B (S. cerevisiae); Ard1b; Ard2; LOC289482; N-alpha-acetyltransferase 11; N-alpha-acetyltransferase 11, NatA catalytic subunit; N-terminal acetyltransferase complex ARD1 subunit homolog B; natA catalytic subunit; natA catalytic subunit Naa11; similar to MGC10646 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81412,487,652 - 12,497,688 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1412,485,684 - 12,529,896 (+)EnsemblGRCr8
mRatBN7.21412,183,651 - 12,193,687 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1412,183,651 - 12,193,686 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1412,150,526 - 12,160,522 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01413,450,367 - 13,460,363 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01412,166,691 - 12,176,723 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01413,827,615 - 13,838,642 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1413,827,636 - 13,837,671 (+)Ensemblrn6Rnor6.0
Rnor_5.01413,771,561 - 13,782,584 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41413,633,055 - 13,643,091 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1412,245,981 - 12,256,017 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
NatA complex  (IBA,IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16638120  


Genomics

Comparative Map Data
Naa11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81412,487,652 - 12,497,688 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1412,485,684 - 12,529,896 (+)EnsemblGRCr8
mRatBN7.21412,183,651 - 12,193,687 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1412,183,651 - 12,193,686 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1412,150,526 - 12,160,522 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01413,450,367 - 13,460,363 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01412,166,691 - 12,176,723 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01413,827,615 - 13,838,642 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1413,827,636 - 13,837,671 (+)Ensemblrn6Rnor6.0
Rnor_5.01413,771,561 - 13,782,584 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41413,633,055 - 13,643,091 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1412,245,981 - 12,256,017 (+)NCBICelera
Cytogenetic Map14p22NCBI
NAA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38479,155,376 - 79,326,061 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl479,225,694 - 79,326,061 (-)Ensemblhg38GRCh38
GRCh37480,237,801 - 80,247,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36480,457,296 - 80,466,195 (-)NCBIBuild 36Build 36hg18NCBI36
Celera477,533,945 - 77,542,850 (-)NCBICelera
Cytogenetic Map4q21.21NCBI
HuRef475,985,419 - 75,994,324 (-)NCBIHuRef
CHM1_1480,214,752 - 80,223,655 (-)NCBICHM1_1
T2T-CHM13v2.0482,491,029 - 82,661,846 (-)NCBIT2T-CHM13v2.0
Naa11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39597,530,068 - 97,540,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl597,530,057 - 97,540,238 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38597,382,209 - 97,392,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl597,382,198 - 97,392,379 (-)Ensemblmm10GRCm38
MGSCv37597,811,228 - 97,821,349 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36597,622,511 - 97,632,632 (-)NCBIMGSCv36mm8
Celera594,721,204 - 94,731,280 (-)NCBICelera
Cytogenetic Map5E3NCBI
cM Map547.62NCBI
Naa11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554333,662,098 - 3,662,787 (-)Ensembl
ChiLan1.0NW_0049554333,653,046 - 3,662,924 (-)NCBIChiLan1.0ChiLan1.0
NAA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2350,732,434 - 50,905,918 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1450,921,713 - 51,095,217 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0444,864,629 - 44,874,449 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1450,710,618 - 50,720,013 (+)NCBIPanPan1.1PanPan1.1panPan2
NAA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1323,648,192 - 3,657,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl323,656,949 - 3,657,638 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3238,223,663 - 38,233,234 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0323,670,178 - 3,679,751 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl323,678,936 - 3,679,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1323,711,282 - 3,720,847 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,608,527 - 3,618,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03236,550,809 - 36,560,382 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Naa11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052858,646,582 - 8,654,965 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366762,859,802 - 2,860,494 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366762,859,798 - 2,860,547 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8138,324,710 - 138,325,402 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18138,324,566 - 138,333,101 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28147,469,931 - 147,478,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAA11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1727,767,460 - 27,776,541 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl727,775,422 - 27,776,111 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660376,174,191 - 6,183,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Naa11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475711,790,414 - 11,791,103 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475711,790,223 - 11,798,137 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Naa11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1116,882,146 - 6,892,966 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Naa11
105 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:562
Count of miRNA genes:277
Interacting mature miRNAs:331
Transcripts:ENSRNOT00000002776
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat

Markers in Region
BI294139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21412,191,590 - 12,191,783 (+)MAPPERmRatBN7.2
Rnor_6.01413,835,576 - 13,835,768NCBIRnor6.0
Rnor_5.01413,779,518 - 13,779,710UniSTSRnor5.0
RGSC_v3.41413,640,995 - 13,641,187UniSTSRGSC3.4
Celera1412,253,921 - 12,254,113UniSTS
RH 3.4 Map14153.97UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 9 67 144 89 88 57 65 57 6 298 161 8 125 65 87 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000002776   ⟹   ENSRNOP00000002776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1412,485,684 - 12,499,982 (+)Ensembl
mRatBN7.2 Ensembl1412,183,651 - 12,193,686 (+)Ensembl
Rnor_6.0 Ensembl1413,827,636 - 13,837,671 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136332   ⟹   ENSRNOP00000101208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1412,487,679 - 12,529,896 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138275   ⟹   ENSRNOP00000098898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1412,487,675 - 12,495,907 (+)Ensembl
RefSeq Acc Id: NM_001024742   ⟹   NP_001019913
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81412,487,652 - 12,497,688 (+)NCBI
mRatBN7.21412,183,651 - 12,193,687 (+)NCBI
Rnor_6.01413,827,636 - 13,837,672 (+)NCBI
Rnor_5.01413,771,561 - 13,782,584 (+)NCBI
RGSC_v3.41413,633,055 - 13,643,091 (+)RGD
Celera1412,245,981 - 12,256,017 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001019913 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97350 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002776
  ENSRNOP00000002776.4
GenBank Protein Q4V8K3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019913   ⟸   NM_001024742
- UniProtKB: Q4V8K3 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002776   ⟸   ENSRNOT00000002776
Ensembl Acc Id: ENSRNOP00000098898   ⟸   ENSRNOT00000138275
Ensembl Acc Id: ENSRNOP00000101208   ⟸   ENSRNOT00000136332
Protein Domains
N-acetyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V8K3-F1-model_v2 AlphaFold Q4V8K3 1-246 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564723 AgrOrtholog
BioCyc Gene G2FUF-16350 BioCyc
Ensembl Genes ENSRNOG00000002031 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002776 ENTREZGENE
  ENSRNOT00000002776.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.630.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114829 IMAGE-MGC_LOAD
  IMAGE:7462336 IMAGE-MGC_LOAD
InterPro Acyl_CoA_acyltransferase UniProtKB/Swiss-Prot
  Ard1-like UniProtKB/Swiss-Prot
  GNAT_dom UniProtKB/Swiss-Prot
KEGG Report rno:289482 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114365 IMAGE-MGC_LOAD
  MGC:93678 IMAGE-MGC_LOAD
NCBI Gene 289482 ENTREZGENE
PANTHER N-ALPHA-ACETYLTRANSFERASE 10 UniProtKB/Swiss-Prot
  PTHR23091 UniProtKB/Swiss-Prot
Pfam Acetyltransf_1 UniProtKB/Swiss-Prot
PhenoGen Naa11 PhenoGen
PROSITE GNAT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002031 RatGTEx
Superfamily-SCOP SSF55729 UniProtKB/Swiss-Prot
UniProt A0ABK0L475_RAT UniProtKB/TrEMBL
  NAA11_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Naa11  N(alpha)-acetyltransferase 11, NatA catalytic subunit  Ard1b  ARD1 homolog B (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-11 Ard1b  ARD1 homolog B (S. cerevisiae)   LOC289482  similar to MGC10646 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC289482  similar to MGC10646 protein      Symbol and Name status set to provisional 70820 PROVISIONAL