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Gene: Shisal2b (shisa like 2B) Rattus norvegicus

Analyze

Symbol:

Shisal2b

Name:

shisa like 2B

RGD ID:

1564672

Description:

Predicted to be located in membrane. Orthologous to human SHISAL2B (shisa like 2B); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cocaine.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam159b; family with sequence similarity 159, member B; LOC499520; membrane protein FAM159B; RGD1564672; similar to hypothetical protein MGC52498

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHISAL2B (shisa like 2B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Shisal2b (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shisal2b (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHISAL2B (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHISAL2B (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shisal2b (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHISAL2B (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHISAL2B (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shisal2b (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Shisal2b (shisa like 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MYOZ1 (myozenin 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Shisal2b (shisa like 2B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SHISAL2B (shisa like 2B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shisal2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,736,377 - 37,754,126 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	37,736,387 - 37,753,212 (-)	Ensembl				GRCr8
mRatBN7.2	2	36,002,622 - 36,019,529 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	36,002,651 - 36,019,123 (-)	Ensembl				mRatBN7.2
Rnor_6.0	2	34,946,713 - 34,965,597 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,946,797 - 34,963,207 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	54,072,411 - 54,089,150 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,852,462 - 35,870,492 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,958,695 - 31,977,883 (-)	NCBI		Celera
Cytogenetic Map	2	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

6-propyl-2-thiouracil (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

cocaine (EXP)

fenvalerate (EXP)

methapyrilene (ISO)

PCB138 (ISO)

pentanal (ISO)

propanal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Shisal2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,736,377 - 37,754,126 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	37,736,387 - 37,753,212 (-)	Ensembl				GRCr8
mRatBN7.2	2	36,002,622 - 36,019,529 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	36,002,651 - 36,019,123 (-)	Ensembl				mRatBN7.2
Rnor_6.0	2	34,946,713 - 34,965,597 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,946,797 - 34,963,207 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	54,072,411 - 54,089,150 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,852,462 - 35,870,492 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,958,695 - 31,977,883 (-)	NCBI		Celera
Cytogenetic Map	2	q13	NCBI

SHISAL2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	64,690,503 - 64,718,190 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	64,690,442 - 64,718,190 (+)	Ensembl			hg38	GRCh38
GRCh37	5	63,986,330 - 64,014,017 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	64,021,891 - 64,056,333 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	60,983,044 - 61,010,937 (+)	NCBI		Celera
Cytogenetic Map	5	q12.3	NCBI
HuRef	5	60,940,462 - 60,968,592 (+)	NCBI		HuRef
CHM1_1	5	63,986,030 - 64,013,910 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	65,510,627 - 65,538,314 (+)	NCBI		T2T-CHM13v2.0

Shisal2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	104,981,791 - 105,000,401 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	104,981,791 - 105,000,401 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	104,845,283 - 104,863,893 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	104,845,283 - 104,863,893 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	105,635,363 - 105,653,973 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	105,965,665 - 105,984,275 (-)	NCBI		MGSCv36	mm8
Celera	13	109,239,179 - 109,257,791 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	56.87	NCBI

Shisal2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	4,268,531 - 4,289,526 (-)	Ensembl
ChiLan1.0	NW_004955446	4,268,531 - 4,289,011 (-)	NCBI	ChiLan1.0	ChiLan1.0

SHISAL2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	49,201,343 - 49,223,786 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	47,354,974 - 47,377,411 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	49,286,075 - 49,308,524 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	50,936,226 - 50,958,051 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	50,936,226 - 50,958,051 (-)	Ensembl			panPan2	panpan1.1

SHISAL2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	50,591,065 - 50,606,520 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	50,590,487 - 50,606,452 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	47,547,512 - 47,563,233 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	51,075,023 - 51,090,546 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	51,074,671 - 51,090,485 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	48,135,468 - 48,151,160 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	48,931,352 - 48,947,054 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	49,818,817 - 49,834,538 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Shisal2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	195,406,820 - 195,431,546 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	4,343,325 - 4,367,868 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	4,343,292 - 4,367,705 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHISAL2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	43,273,506 - 43,298,244 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	43,273,588 - 43,299,352 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	46,499,271 - 46,525,016 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHISAL2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	60,878,778 - 60,901,099 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	60,879,880 - 60,901,029 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	9,514,025 - 9,535,561 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shisal2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624815	5,126,006 - 5,142,493 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624815	5,126,029 - 5,142,712 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Shisal2b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	192,497,542 - 192,513,382 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Shisal2b
122 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	119
Count of miRNA genes:	103
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000017870
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

RH128962

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	36,002,647 - 36,002,802 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,946,739 - 34,946,893	NCBI	Rnor6.0
Rnor_5.0	2	54,072,437 - 54,072,591	UniSTS	Rnor5.0
RGSC_v3.4	2	35,852,488 - 35,852,642	UniSTS	RGSC3.4
Celera	2	31,958,721 - 31,958,875	UniSTS
RH 3.4 Map	2	153.5	UniSTS
Cytogenetic Map	2	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	8	16	116	34	29	5	32	5	6	112	68	6	93	24	78	24	3	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001072885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_574844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017870 ⟹ ENSRNOP00000017869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	37,736,387 - 37,753,212 (-)	Ensembl
mRatBN7.2 Ensembl	2	36,002,651 - 36,019,123 (-)	Ensembl
Rnor_6.0 Ensembl	2	34,946,797 - 34,963,207 (-)	Ensembl

RefSeq Acc Id:

XM_574844 ⟹ XP_574844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,736,377 - 37,754,126 (-)	NCBI
mRatBN7.2	2	36,002,622 - 36,019,529 (-)	NCBI
Rnor_6.0	2	34,946,713 - 34,965,597 (-)	NCBI
Rnor_5.0	2	54,072,411 - 54,089,150 (-)	NCBI
RGSC_v3.4	2	35,852,462 - 35,870,492 (-)	RGD

Sequence:

show sequence

ACAGGGCATTATTTTATTATTTCAACACTCCCTCCTCAGGTGCTCCCCTGAAAACATCCTGTGG
TGTGAGGCAGAAACTTCTTCTTGCATCAACAGTTACCAACCATTTATTGATGGAACATTCTGGG
AGTCCTTACTAATCGACTTGGTTGTGTGAACACTATAGAGTGTATGTACACAAACTAAGATTGC
TATAACGTCACTAGGCAATACAGTTGCATAGGAATCCCCCTACCTCCTATATATATGGGGTCCA
TTATTGATTGCTATGTTGCTGTGAGTTGCCTGTCTGTAACAGAAACTGACTTGAGGGCTGTGCA
TGCAACTCAGTTGGTAGAGTGCTTGCCTAGCATTCAGGGAGCTCTGTGTTCAAATCCCAACACC
GGCCATGCAAACGATACTAGAGGAAGACAGAAGTTACCAGACTGTTGAAGTTACCTTCGATGAC
ATAGCAAGTTCAAAGCCCACTGAGGCCAGTGTCAAAACTAAAATTATTTGAAGGCACATTTACC
AGAAAGGGACATTTAGTCTTGAGTAACAGGGGCCTCAAGAGTAGGAAGGTGCAAGAAAGGACTC
AAACAAAAATCACAAAGCCGTCAACCTTTGTTTGTTACTCCTTTCTGCCTTGTTTTTCTCTTTT
ATGCCCACTACTTTCTTTTGCCTTCCTGTGCATGTGATAGAATTACAGTGCGATGAGAGAGACC
AAGTCCAGACCTAACTAAATTGGGTCCAGTCTCTGGCTGAGTCTGTGTGTGGCATGCTAGAAAC
CAGGTTGAATTCCCATCTCTACGACACAATGGGTTCTGGCCATGGATATGACATCCTGCAGGAT
GGTGGTGTCTAAGTGGAAACAGGTGAAGGAAGCCTTGTGATGATTCTCCAACCCATCCCCCTCC
CCTCCACTCTGTAGAAAGCATAGCTACTGTGCAGGGTGGGTGAGAGTTCAGGTGGAGTCCAGTT
GGTTGAGTTGAGTGTGTGAAGCTGAGAAAGAAGCCAGGGAAGCCAGGGAACATGGTTCCAGAGA
AGAGAGAATTGGGTGACCGGACAGGTGACCTGTAGTCTAGCTTTGAAGGTCACAAGAATCTTTA
GCTTAGTACTGATCTGTCTGTTTACCTCAGGGAGGAAGCTGTCTGATGCTGGGAAAAGAAACAC
TGAAAGGAGTGGAGAGAACAATCCTTAAAGTTTCAGCAGGTCTGGGGATGGTGGGGGGCTTGCC
ACGACTGGTAAGCTTGGCGATTCCTGACGTATGGCATAGAATATTCAGAAAGTGTTATCTCTGT
AGGGAAGAATTTAGTCCACGCTGATCCCGACCAGCGAGGCTGAAAAACAAATGGGAAAGAATCA
AACTGTCTCCAAGTAACTGCGTTCCAGAGCATAGCTCAGGAATATTTATAAGAATATAAAAATA
CCCAGCGCACAAGTTCATGACGTCTGCCTTCCAATCAAGCCCCTGGCCAAAGGAAGGAAGCAGA
ACTTGAAAAATGGAACCATGCTCTGCCCTAGAAATTCTGCAGGCACTAGTTGCTAGTTTCGAGT
TAATGCGATTGTTATTTTTGTTCGTATACCCCTCAGTATTGTTTTGACTTGCTACAGTAAGCAC
ACATGACTACTGATATTTCAAAACACTGGACAGATCACTTAGAGAAAATGAGAATCAAAGGGAA
AAGAGGTTCCTGCACTTCAGAAGTGATTGAAAAATCCCTCCCTTTCTGCTTCGCTTTCTAGAAG
GTTCTCACTTTCTTTTCCACCATTTCTTGCCTTTCCTCCCTTTTCCATGTAATTTAGGTGAGCA
TGGGGTGCCGCTGTATGTTTTTAAAACACCCACAGTTAGTTGATACTTGATTGTTAGCTCTCAC
TACAGCTAATCTAAGGCCCCTTTCCTAGCCTGCTCCCCAACCTGGATCAGTTGTCCACCCCACC
CAAGTAAAGCCTCTGAGAGCCAGACTCTATTTGCCATGTCACTGGGTAAACAAAGATGACACTT
TGGCTGTACCTGTGTAAACTGCATCCGTGCCCACCTCTGCTGCTCTCTATAGAGATCCTTCTGA
TGCGGAGTGAAGGCTAACTACTACAGGTTGTGGATGAAGTGAATGAAAGTGGAAGGGAGTCCGC
AGAGAGCAAAGAAAACAGTCGGAGCTCTGGAGAGGGAGAAGAGGCAGAGGGCTGGGCCACCAGA
GAAAGGGACCACTCAGAGACGAGACCCAGCGGTGAGAGCAGAGCGCTCCAGCGCCGCGTGGACA
GCGGGAAGTAGAGCCCAGAGGGCTCAGAGGCTGAGTGCCAAGCACTCAGACCCCAGATCGCAAA
GGTGCTCAGAGTCGCCGGGGCTTGGGACGAGCACAGTCCTAGCGCACAACGCACGCACCTCGGG
GTCCTGCGCACGGCCCGCAGCGATGAGCGAGAGCAGCCGCCTGTGCTCAGGCTACTACAGCCTC
AACCGCAGCTTCGTGGAGCCCTTCCAGTGCCCGCGGCGCGGCGATGGGGCCGCGCTGCTCTACT
GCTGCGGCTTCGCAGACCTCAAGTACTGCTGCAGCGAGCCGGGCAGCTACTTCCCCTACAAGCA
CAGCTACATGTGGAGCCTCAGCATTGGTGCTCTGATTGGATTGGGAATTGCTGCCCTTGTCTTA
CTTGCCTTTGTCATCAGTGTCTGTGTCCTTTGCTACTTATTTCTGTACACAAAACCTCAAAGAT
TAGACAATGGCCTTAAACTTCAGCACCTAGAGGCATCTTCTACCCTAGAAGGCAATGTAAATAG
AAAAGCCAAAGGCCTCATTTCAAATGCAGCATCAAATTCGACAAATGAGACCTACGAAGCCGAC
GATGTGACTCAAGAAAGAACAATGGACACAACACAAATCAATATTGCCTGTTAGCTAAATCCCT
GTTTTGAAAGCTTACCCAAGAGAGGGAGCATTAAGAATAAAGAATGCAAAAAATTAAATAAAAT
TAAAGATGCA

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Protein Sequences


Protein RefSeqs	XP_574844	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10274	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017869
	ENSRNOP00000017869.5

RefSeq Acc Id:

XP_574844 ⟸ XM_574844

- Sequence:

show sequence

MKVEGSPQRAKKTVGALEREKRQRAGPPEKGTTQRRDPAVRAERSSAAWTAGSRAQRAQRLSAK
HSDPRSQRCSESPGLGTSTVLAHNARTSGSCARPAAMSESSRLCSGYYSLNRSFVEPFQCPRRG
DGAALLYCCGFADLKYCCSEPGSYFPYKHSYMWSLSIGALIGLGIAALVLLAFVISVCVLCYLF
LYTKPQRLDNGLKLQHLEASSTLEGNVNRKAKGLISNAASNSTNETYEADDVTQERTMDTTQIN
IAC

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Ensembl Acc Id:

ENSRNOP00000017869 ⟸ ENSRNOT00000017870

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AB47-F1-model_v2	AlphaFold	D4AB47	1-159	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564672	AgrOrtholog
BioCyc Gene	G2FUF-54544	BioCyc
Ensembl Genes	ENSRNOG00000013372	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017870	ENTREZGENE
	ENSRNOT00000017870.7	UniProtKB/TrEMBL
InterPro	Shisa	UniProtKB/TrEMBL
	Shisa_N	UniProtKB/TrEMBL
NCBI Gene	499520	ENTREZGENE
PANTHER	PROTEIN SHISA-LIKE-2B	UniProtKB/TrEMBL
	PTHR31395	UniProtKB/TrEMBL
Pfam	Shisa	UniProtKB/TrEMBL
PhenoGen	Shisal2b	PhenoGen
RatGTEx	ENSRNOG00000013372	RatGTEx
UniProt	D4AB47_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-10-30	Shisal2b	shisa like 2B	Fam159b	family with sequence similarity 159, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-16	Fam159b	family with sequence similarity 159, member B	RGD1564672	similar to hypothetical protein MGC52498	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564672	similar to hypothetical protein MGC52498	RGD1564672_predicted	similar to hypothetical protein MGC52498 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564672_predicted	similar to hypothetical protein MGC52498 (predicted)	LOC499520	similar to hypothetical protein MGC52498	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499520	similar to hypothetical protein MGC52498			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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