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Gene: C3h11orf96 (similar to human chromosome 11 open reading frame 96) Rattus norvegicus

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Symbol:

C3h11orf96

Name:

similar to human chromosome 11 open reading frame 96

RGD ID:

1564664

Description:

Predicted to be located in cytoplasm. Orthologous to human C11orf96 (chromosome 11 open reading frame 96); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ag2; chromosome 11 open reading frame 96; hypothetical protein LOC499839; LOC499839; RGD1564664; similar to human; similar to LOC387763 protein; uncharacterized protein C11orf96 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	100,375,474 - 100,376,717 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	100,351,199 - 100,378,346 (-)	Ensembl				GRCr8
mRatBN7.2	3	79,920,125 - 79,921,368 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	79,920,129 - 79,921,523 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	83,393,663 - 83,395,055 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	91,992,753 - 91,994,145 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	89,838,235 - 89,839,627 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	82,854,779 - 82,856,171 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	82,854,777 - 82,856,171 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	89,555,988 - 89,557,379 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	78,366,538 - 78,367,930 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	79,121,424 - 79,122,816 (-)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

15-acetyldeoxynivalenol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Archazolid B (ISO)

azathioprine (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

carbamazepine (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dinophysistoxin 1 (ISO)

dioxygen (EXP)

disulfiram (ISO)

dorsomorphin (ISO)

entinostat (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

hexadecanoic acid (ISO)

iron dichloride (ISO)

lead(0) (ISO)

malathion (ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

panobinostat (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP)

propanal (ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thapsigargin (ISO)

thiram (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triclosan (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10820183

Genomics

Comparative Map Data

C3h11orf96
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	100,375,474 - 100,376,717 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	100,351,199 - 100,378,346 (-)	Ensembl				GRCr8
mRatBN7.2	3	79,920,125 - 79,921,368 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	79,920,129 - 79,921,523 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	83,393,663 - 83,395,055 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	91,992,753 - 91,994,145 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	89,838,235 - 89,839,627 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	82,854,779 - 82,856,171 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	82,854,777 - 82,856,171 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	89,555,988 - 89,557,379 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	78,366,538 - 78,367,930 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	79,121,424 - 79,122,816 (-)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

C11orf96
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	43,942,637 - 43,943,878 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	43,942,637 - 43,943,878 (+)	Ensembl			hg38	GRCh38
GRCh37	11	43,964,187 - 43,965,428 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	43,903,468 - 43,922,578 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	44,109,952 - 44,111,266 (+)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	43,673,384 - 43,674,741 (+)	NCBI		HuRef
CHM1_1	11	43,963,097 - 43,964,424 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	44,097,987 - 44,099,228 (+)	NCBI		T2T-CHM13v2.0

Gm13889
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	93,786,155 - 93,787,445 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	93,786,155 - 93,787,546 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	93,955,810 - 93,957,100 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	93,955,810 - 93,957,201 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	93,795,967 - 93,797,257 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	93,756,649 - 93,757,966 (-)	NCBI		MGSCv36	mm8
Celera	2	95,352,366 - 95,353,346 (-)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	51.62	NCBI

LOC102024473
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955422	3,639,798 - 3,641,449 (-)	NCBI	ChiLan1.0	ChiLan1.0

C9H11orf96
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	46,157,052 - 46,159,397 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	46,162,989 - 46,165,334 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	43,902,349 - 43,904,694 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	44,398,802 - 44,399,763 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

C18H11orf96
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	18	25,535,538 - 25,535,982 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	26,471,190 - 26,471,634 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	18	25,980,607 - 25,981,051 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	25,625,855 - 25,626,298 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	26,238,089 - 26,238,533 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH11orf96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	22,610,226 - 22,611,251 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	4,722,507 - 4,722,878 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	4,721,868 - 4,722,888 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C2H11orf96
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	18,392,294 - 18,393,911 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C1H11orf96
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	21,439,813 - 21,441,151 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	118,680,569 - 118,681,827 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH11orf96
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	4,086,606 - 4,087,292 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624767	4,086,084 - 4,087,380 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C5H11orf96
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	68,122,724 - 68,124,503 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C3h11orf96
6 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	90	59	6	354	190	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001110055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB010079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC140988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000088555 ⟹ ENSRNOP00000072215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,366,365 - 100,378,346 (-)	Ensembl
mRatBN7.2 Ensembl	3	79,920,129 - 79,921,523 (-)	Ensembl
Rnor_6.0 Ensembl	3	82,854,777 - 82,856,171 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125191 ⟹ ENSRNOP00000106473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,375,460 - 100,376,997 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160458 ⟹ ENSRNOP00000102268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	100,351,199 - 100,378,346 (-)	Ensembl

RefSeq Acc Id:

NM_001110055 ⟹ NP_001103525

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	100,375,474 - 100,376,717 (-)	NCBI
mRatBN7.2	3	79,920,125 - 79,921,368 (-)	NCBI
Rnor_6.0	3	82,854,779 - 82,856,171 (-)	NCBI
Rnor_5.0	3	89,555,988 - 89,557,379 (-)	NCBI
RGSC_v3.4	3	78,366,538 - 78,367,930 (-)	RGD
Celera	3	79,121,424 - 79,122,816 (-)	RGD

Sequence:

show sequence

AAGGGGCCGTTACTTTCCCAGAGTGGCGGGGAGGGCGACGTCAGGCGGAAGGGCGCGGGGCGCG
CACGCTTTAAATGGCATTCGCTGTCATCCGAGCTTGCAGCCGTGTGGGCAGAGGCGGGCTATAT
AAGCGGCTAGGCGGGCTGCCGCGGGGCACACGGCGACAGAGACAGCGGCGGCAGGGAGCCTCTC
TGAGCACCACCGAGCAGCGCAGCTTAGCCCCGCGTCCCCCGACGGGCCCGCCCGCCCGCTATCC
CTCTCCAGCAGTGCCGGCTCGGGCCAGCGAGGCCCGCCGCCACCCCGCAGCAGATTTGGATCCC
CCGCCCGGAGAGCCCCAGGCTGTCGCCTCCCGGGGGACCCCGGAGCCGCGGCCGCCCCCGGAGA
GCCCGGGCGCCCAGCCGCCCCCCGGCCCCGCAGCCGCCGACGGCGCCATGGCGGCCGCCAAGCC
CGGCGAGCTCATGGGCATCTCTTCTAGCTACCAAGCGGTGATGCCACACTTCGTGTGCCTGGCC
GATGAGTTCCCGCAGCCGGTGCGGCCCGCCAAGCTGCCCAAGGGCAAGGGCCGGCTGCGGCGAC
CGCGCCAGTCCCGCTTCAAGACGCAGCCGGTGACCTTCGATGAGATCCAGGAGGTGGAGGAGGA
GGGGGTGTCCCCGATGGAGGAGGAAAAGGCCAAGAAGTCGTTCCTGCAGAGCTTGGAATGCCTG
CGCCGCAGCACGCAGAGCCTGTCGCTGCAGAGGGAGCCGCTCGGTAGCTGCAAACTGAGGAACA
GCCTGGACTCCAGCGACTCCGACTCGGCGCTGTGAGGCGGTAGCCTACTTGGGGACTTGCTCCG
CCGCCAAGCGCCGAGCAACAGCGGAAGCATCCGGAGGGGACCCGCGCCCCAGGCGGCCACGACT
ACCCGGGATCAGCTCCCCTCACTCTCTGGGACTGTAGCCCGGCTGCGGATCAGCCGGGACCCCG
GAGCGCGTCCGGGGACGCAGGGAGGGGAAGCCGCTTTCTTTGCCCTTGTAAATGTTTATTTTTT
AACTCTTTCCCAGTACGAACTCTGCGGTGAGCGTGCGCGGGAGGCGGCCCGCGCTGAGTCGGCT
CGCCCGGGGTCGCCGCTGCAAAGGCCTTTGGCTCGCAACTCCGATTCTGCACACCGTCCACTGT
GCATACCCCACCCCCAGCGCATACCGGTTCACACTCACGCCGACACTCTCACTGAACACTTTTA
TAATTGTTGAGCTGACCGAGGGGACTTGGGGGCTGCGCGGCTGCCGCTGCAGCCGAGGATTGAT
ATTTATTTTTGCATTGCAATCGCTGAAGGCGTTTTATTAATGGCTTTTTAGGTGGGTGTTGTCT
GTGAGGCGTCCGAATGGACACAAATAAAGCCAATATATTTACACAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001103525	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A8IHN8	(Get FASTA)	NCBI Sequence Viewer
	BAF81982	(Get FASTA)	NCBI Sequence Viewer
	EDL79600	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072215.1

RefSeq Acc Id:

NP_001103525 ⟸ NM_001110055

- Sequence:

show sequence

MAFAVIRACSRVGRGGLYKRLGGLPRGTRRQRQRRQGASLSTTEQRSLAPRPPTGPPARYPSPA
VPARASEARRHPAADLDPPPGEPQAVASRGTPEPRPPPESPGAQPPPGPAAADGAMAAAKPGEL
MGISSSYQAVMPHFVCLADEFPQPVRPAKLPKGKGRLRRPRQSRFKTQPVTFDEIQEVEEEGVS
PMEEEKAKKSFLQSLECLRRSTQSLSLQREPLGSCKLRNSLDSSDSDSAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000072215 ⟸ ENSRNOT00000088555

Ensembl Acc Id:

ENSRNOP00000102268 ⟸ ENSRNOT00000160458

Ensembl Acc Id:

ENSRNOP00000106473 ⟸ ENSRNOT00000125191

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A8IHN8-F1-model_v2	AlphaFold	A8IHN8	1-242	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564664	AgrOrtholog
BioCyc Gene	G2FUF-48660	BioCyc
Ensembl Genes	ENSRNOG00000055564	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000088555.2	UniProtKB/Swiss-Prot
InterPro	DUF4695	UniProtKB/Swiss-Prot
KEGG Report	rno:499839	UniProtKB/Swiss-Prot
NCBI Gene	499839	ENTREZGENE
PANTHER	CHROMOSOME 11 OPEN READING FRAME 96	UniProtKB/Swiss-Prot
	PTHR40250	UniProtKB/Swiss-Prot
Pfam	DUF4695	UniProtKB/Swiss-Prot
PhenoGen	C3h11orf96	PhenoGen
RatGTEx	ENSRNOG00000055564	RatGTEx
UniProt	A0ABK0LXE0_RAT	UniProtKB/TrEMBL
	A8IHN8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-12-14	C3h11orf96	similar to human chromosome 11 open reading frame 96	chromosome 11 open reading frame 96	similar to human	Name and Symbol changed	629549	APPROVED
2023-09-19	chromosome 11 open reading frame 96	similar to human	RGD1564664	similar to LOC387763 protein	Symbol and Name Changed	1299863	APPROVED
2008-04-30	RGD1564664	similar to LOC387763 protein	RGD1564664_predicted	similar to LOC387763 protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564664_predicted	similar to LOC387763 protein (predicted)	LOC499839	similar to LOC387763 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499839	similar to LOC387763 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar