Tex44 (testis expressed 44) - Rat Genome Database

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Gene: Tex44 (testis expressed 44) Rattus norvegicus
Analyze
Symbol: Tex44
Name: testis expressed 44
RGD ID: 1564629
Description: Predicted to be located in cytoplasm. Orthologous to human TEX44 (testis expressed 44); INTERACTS WITH bisphenol A; atrazine (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC501180; LOC501180; similar to hypothetical protein MGC35154; testis-expressed protein 44; uncharacterized protein C2orf57 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,523,649 - 94,525,067 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl994,523,640 - 94,526,154 (+)EnsemblGRCr8
mRatBN7.2987,075,684 - 87,077,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,075,684 - 87,077,102 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx995,492,808 - 95,494,226 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,621,936 - 100,623,354 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,004,031 - 99,005,449 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,445,002 - 93,446,420 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,445,002 - 93,446,420 (+)Ensemblrn6Rnor6.0
Rnor_5.0993,172,940 - 93,174,358 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4985,189,062 - 85,190,480 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera984,491,111 - 84,492,529 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:26168773  


Genomics

Comparative Map Data
Tex44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,523,649 - 94,525,067 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl994,523,640 - 94,526,154 (+)EnsemblGRCr8
mRatBN7.2987,075,684 - 87,077,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,075,684 - 87,077,102 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx995,492,808 - 95,494,226 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,621,936 - 100,623,354 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,004,031 - 99,005,449 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,445,002 - 93,446,420 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,445,002 - 93,446,420 (+)Ensemblrn6Rnor6.0
Rnor_5.0993,172,940 - 93,174,358 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4985,189,062 - 85,190,480 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera984,491,111 - 84,492,529 (+)NCBICelera
Cytogenetic Map9q35NCBI
TEX44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,592,864 - 231,594,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,592,864 - 231,594,276 (+)Ensemblhg38GRCh38
GRCh372232,457,575 - 232,458,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362232,165,856 - 232,167,238 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2226,233,973 - 226,235,392 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,299,530 - 224,300,949 (+)NCBIHuRef
CHM1_12232,463,249 - 232,464,668 (+)NCBICHM1_1
T2T-CHM13v2.02232,077,341 - 232,078,753 (+)NCBIT2T-CHM13v2.0
Tex44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,354,051 - 86,355,771 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,354,051 - 86,355,774 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38186,426,329 - 86,428,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,426,329 - 86,428,052 (+)Ensemblmm10GRCm38
MGSCv37188,322,904 - 88,324,624 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36188,257,500 - 88,259,223 (+)NCBIMGSCv36mm8
Celera189,395,430 - 89,397,150 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
Tex44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554534,108,596 - 4,110,610 (-)NCBIChiLan1.0ChiLan1.0
TEX44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213134,210,900 - 134,224,686 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B134,225,866 - 134,230,926 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,843,674 - 118,845,087 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,627,878 - 237,629,298 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B237,627,967 - 237,629,154 (+)EnsemblpanPan2panpan1.1
TEX44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,453,253 - 43,454,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2543,453,310 - 43,454,437 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2544,011,601 - 44,012,918 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02543,710,636 - 43,711,953 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,710,362 - 43,711,817 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,638,003 - 43,639,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,481,143 - 43,482,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,637,050 - 43,638,367 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tex44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,584,212 - 185,585,661 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365255,354,202 - 5,355,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115132,266,149 - 132,267,612 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215146,038,817 - 146,042,242 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,609,567 - 117,611,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10117,610,187 - 117,611,374 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604081,835,439 - 81,836,851 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248434,673,112 - 4,674,285 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tex44
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14158,560,553 - 158,561,965 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tex44
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:41
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000025029
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat

Markers in Region
UniSTS:492179  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2987,075,670 - 87,077,050 (+)MAPPERmRatBN7.2
Rnor_6.0993,444,989 - 93,446,368NCBIRnor6.0
Rnor_5.0993,172,927 - 93,174,306UniSTSRnor5.0
RGSC_v3.4985,189,049 - 85,190,428UniSTSRGSC3.4
Celera984,491,098 - 84,492,477UniSTS
Cytogenetic Map9q35UniSTS


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 4 9 8 13 4 5 4 48 13 7 28 25 9 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000025029   ⟹   ENSRNOP00000025030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl994,523,640 - 94,526,154 (+)Ensembl
mRatBN7.2 Ensembl987,075,684 - 87,077,102 (+)Ensembl
Rnor_6.0 Ensembl993,445,002 - 93,446,420 (+)Ensembl
RefSeq Acc Id: NM_001024364   ⟹   NP_001019535
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8994,523,649 - 94,525,067 (+)NCBI
mRatBN7.2987,075,684 - 87,077,102 (+)NCBI
Rnor_6.0993,445,002 - 93,446,420 (+)NCBI
Rnor_5.0993,172,940 - 93,174,358 (+)NCBI
RGSC_v3.4985,189,062 - 85,190,480 (+)RGD
Celera984,491,111 - 84,492,529 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001019535 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85806 (Get FASTA)   NCBI Sequence Viewer  
  EDL75588 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025030
  ENSRNOP00000025030.4
GenBank Protein Q5U2Y8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019535   ⟸   NM_001024364
- UniProtKB: Q5U2Y8 (UniProtKB/Swiss-Prot),   A6JWI0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025030   ⟸   ENSRNOT00000025029

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2Y8-F1-model_v2 AlphaFold Q5U2Y8 1-436 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696823
Promoter ID:EPDNEW_R7348
Type:multiple initiation site
Name:Tex44_1
Description:testis expressed 44
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0993,444,993 - 93,445,053EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564629 AgrOrtholog
BioCyc Gene G2FUF-26883 BioCyc
Ensembl Genes ENSRNOG00000018559 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025029 ENTREZGENE
  ENSRNOT00000025029.5 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7112277 IMAGE-MGC_LOAD
InterPro DUF4678 UniProtKB/Swiss-Prot
KEGG Report rno:501180 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93876 IMAGE-MGC_LOAD
NCBI Gene 501180 ENTREZGENE
PANTHER PTHR37365 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 44 UniProtKB/Swiss-Prot
Pfam DUF4678 UniProtKB/Swiss-Prot
PhenoGen Tex44 PhenoGen
RatGTEx ENSRNOG00000018559 RatGTEx
UniProt A6JWI0 ENTREZGENE, UniProtKB/TrEMBL
  Q5U2Y8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-26 Tex44  testis expressed 44  LOC501180  similar to hypothetical protein MGC35154  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC501180  similar to hypothetical protein MGC35154      Symbol and Name status set to provisional 70820 PROVISIONAL