Gene: Fam178b (family with sequence similarity 178, member B) Rattus norvegicus
Analyze
Symbol:
Fam178b
Name:
family with sequence similarity 178, member B
RGD ID:
1564591
Description:
Orthologous to human FAM178B (family with sequence similarity 178 member B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC501125; LOC501125; MGC187539; RGD1564591; similar to chromosome 10 open reading frame 6; uncharacterized protein LOC501125
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 9 46,301,734 - 46,409,571 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 9 46,301,734 - 46,410,686 (-) Ensembl GRCr8 mRatBN7.2 9 38,805,864 - 38,913,681 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 9 38,805,864 - 38,913,672 (-) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 9 47,346,421 - 47,416,791 (-) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 9 52,461,406 - 52,532,467 (-) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 9 50,743,307 - 50,814,364 (-) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 9 43,143,606 - 43,251,440 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 9 43,143,868 - 43,166,640 (-) Ensembl rn6 Rnor6.0 Rnor_6.0 Ensembl 9 43,179,795 - 43,251,400 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 9 42,797,512 - 42,903,922 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 9 35,544,331 - 35,617,171 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 9 36,609,061 - 36,680,051 (-) NCBI Celera Celera 9 36,572,228 - 36,597,258 (-) NCBI Celera Cytogenetic Map 9 q21 NCBI
JBrowse:
Only show annotations with direct experimental evidence (0 objects hidden)
Fam178b Rat 1,2-dichloroethane increases expression ISO Fam178b (Mus musculus) 6480464 ethylene dichloride results in increased expression of FAM178B mRNA CTD PMID:28960355 Fam178b Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Fam178b (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of FAM178B mRNA CTD PMID:24680724 Fam178b Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of FAM178B mRNA CTD PMID:34747641 Fam178b Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of FAM178B mRNA CTD PMID:32109520 Fam178b Rat 2-palmitoylglycerol increases expression ISO FAM178B (Homo sapiens) 6480464 2-palmitoylglycerol results in increased expression of FAM178B mRNA CTD PMID:37199045 Fam178b Rat 4-hydroxyphenyl retinamide decreases expression ISO Fam178b (Mus musculus) 6480464 Fenretinide results in decreased expression of FAM178B mRNA CTD PMID:28973697 Fam178b Rat acrylamide decreases expression EXP 6480464 Acrylamide results in decreased expression of FAM178B mRNA CTD PMID:28959563 Fam178b Rat aflatoxin B1 increases expression ISO Fam178b (Mus musculus) 6480464 Aflatoxin B1 results in increased expression of FAM178B mRNA CTD PMID:19770486 Fam178b Rat Aflatoxin B2 alpha increases methylation ISO FAM178B (Homo sapiens) 6480464 aflatoxin B2 results in increased methylation of FAM178B intron; aflatoxin B2 results in increased methylation more ... CTD PMID:30157460 Fam178b Rat aldehydo-D-glucose multiple interactions ISO Fam178b (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Fam178b Rat arsane affects methylation ISO FAM178B (Homo sapiens) 6480464 Arsenic affects the methylation of FAM178B gene CTD PMID:25304211 Fam178b Rat arsenic atom affects methylation ISO FAM178B (Homo sapiens) 6480464 Arsenic affects the methylation of FAM178B gene CTD PMID:25304211 Fam178b Rat benzo[a]pyrene affects methylation ISO FAM178B (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of FAM178B 5' UTR; Benzo(a)pyrene affects the methylation of FAM178B exon; more ... CTD PMID:27901495|PMID:30157460 Fam178b Rat benzo[e]pyrene increases methylation ISO FAM178B (Homo sapiens) 6480464 benzo(e)pyrene results in increased methylation of FAM178B intron CTD PMID:30157460 Fam178b Rat bisphenol A increases methylation EXP 6480464 bisphenol A results in increased methylation of FAM178B gene CTD PMID:28505145 Fam178b Rat bisphenol A multiple interactions ISO FAM178B (Homo sapiens) 6480464 [bisphenol A co-treated with Fulvestrant] results in increased methylation of FAM178B gene CTD PMID:31601247 Fam178b Rat carbon nanotube decreases expression ISO Fam178b (Mus musculus) 6480464 Nanotubes, Carbon analog results in decreased expression of FAM178B mRNA; Nanotubes, Carbon results in decreased more ... CTD PMID:25554681 Fam178b Rat copper atom increases expression EXP 6480464 Copper deficiency results in increased expression of FAM178B mRNA CTD PMID:26033743 Fam178b Rat copper(0) increases expression EXP 6480464 Copper deficiency results in increased expression of FAM178B mRNA CTD PMID:26033743 Fam178b Rat D-glucose multiple interactions ISO Fam178b (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Fam178b Rat decabromodiphenyl ether increases expression EXP 6480464 decabromobiphenyl ether results in increased expression of FAM178B mRNA CTD PMID:23914054 Fam178b Rat folic acid decreases expression ISO FAM178B (Homo sapiens) 6480464 Folic Acid results in decreased expression of FAM178B mRNA CTD PMID:21867686 Fam178b Rat FR900359 decreases phosphorylation ISO FAM178B (Homo sapiens) 6480464 FR900359 results in decreased phosphorylation of FAM178B protein CTD PMID:37730182 Fam178b Rat fructose multiple interactions ISO Fam178b (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Fam178b Rat fulvestrant multiple interactions ISO FAM178B (Homo sapiens) 6480464 [bisphenol A co-treated with Fulvestrant] results in increased methylation of FAM178B gene CTD PMID:31601247 Fam178b Rat glucose multiple interactions ISO Fam178b (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Fam178b Rat herbicide multiple interactions ISO Fam178b (Mus musculus) 6480464 [lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ... CTD PMID:37567420 Fam178b Rat methapyrilene increases methylation ISO FAM178B (Homo sapiens) 6480464 Methapyrilene results in increased methylation of FAM178B intron CTD PMID:30157460 Fam178b Rat paracetamol affects expression ISO Fam178b (Mus musculus) 6480464 Acetaminophen affects the expression of FAM178B mRNA CTD PMID:17562736 Fam178b Rat resveratrol multiple interactions ISO FAM178B (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in decreased expression of FAM178B mRNA CTD PMID:23557933 Fam178b Rat silver atom increases expression ISO Fam178b (Mus musculus) 6480464 Silver results in increased expression of FAM178B mRNA CTD PMID:27131904 Fam178b Rat silver(0) increases expression ISO Fam178b (Mus musculus) 6480464 Silver results in increased expression of FAM178B mRNA CTD PMID:27131904 Fam178b Rat testosterone decreases expression ISO FAM178B (Homo sapiens) 6480464 Testosterone results in decreased expression of FAM178B mRNA CTD PMID:33359661 Fam178b Rat valproic acid increases methylation ISO FAM178B (Homo sapiens) 6480464 Valproic Acid results in increased methylation of FAM178B gene CTD PMID:29154799 Fam178b Rat vinclozolin increases expression EXP 6480464 vinclozolin results in increased expression of FAM178B mRNA CTD PMID:23869203
References
Additional References at PubMed
Genomics
Comparative Map Data
Fam178b Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 9 46,301,734 - 46,409,571 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 9 46,301,734 - 46,410,686 (-) Ensembl GRCr8 mRatBN7.2 9 38,805,864 - 38,913,681 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 9 38,805,864 - 38,913,672 (-) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 9 47,346,421 - 47,416,791 (-) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 9 52,461,406 - 52,532,467 (-) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 9 50,743,307 - 50,814,364 (-) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 9 43,143,606 - 43,251,440 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 9 43,143,868 - 43,166,640 (-) Ensembl rn6 Rnor6.0 Rnor_6.0 Ensembl 9 43,179,795 - 43,251,400 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 9 42,797,512 - 42,903,922 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 9 35,544,331 - 35,617,171 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 9 36,609,061 - 36,680,051 (-) NCBI Celera Celera 9 36,572,228 - 36,597,258 (-) NCBI Celera Cytogenetic Map 9 q21 NCBI
FAM178B Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 96,875,885 - 96,986,580 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 96,875,882 - 96,986,580 (-) Ensembl hg38 GRCh38 GRCh37 2 97,541,622 - 97,652,317 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 96,905,349 - 96,927,558 (-) NCBI Build 36 Build 36 hg18 NCBI36 Celera 2 91,981,818 - 92,094,500 (-) NCBI Celera Cytogenetic Map 2 q11.2 NCBI HuRef 2 91,501,493 - 91,612,092 (-) NCBI HuRef CHM1_1 2 97,546,555 - 97,657,247 (-) NCBI CHM1_1 T2T-CHM13v2.0 2 97,382,518 - 97,493,200 (-) NCBI T2T-CHM13v2.0
Fam178b Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 1 36,601,779 - 36,722,271 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 1 36,601,773 - 36,722,264 (-) Ensembl GRCm39 Ensembl GRCm39 GRCm38 1 36,562,696 - 36,683,190 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 1 36,562,692 - 36,683,183 (-) Ensembl mm10 GRCm38 MGSCv37 1 36,619,541 - 36,740,028 (-) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 1 36,544,509 - 36,627,632 (-) NCBI MGSCv36 mm8 Celera 1 36,349,503 - 36,469,689 (-) NCBI Celera Cytogenetic Map 1 B NCBI cM Map 1 15.33 NCBI
Fam178b Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955470 4,227,693 - 4,300,875 (-) Ensembl ChiLan1.0 NW_004955470 4,227,356 - 4,303,063 (-) NCBI ChiLan1.0 ChiLan1.0
FAM178B Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 12 31,334,840 - 31,432,828 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2A 31,337,601 - 31,435,589 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2A 102,353,048 - 102,439,089 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 2A 97,796,035 - 97,815,658 (-) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 2A 97,796,035 - 97,908,202 (-) Ensembl panPan2 panpan1.1
FAM178B Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 10 44,991,806 - 45,101,977 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 10 45,020,892 - 45,101,933 (+) Ensembl canFam3 CanFam3.1 Dog10K_Boxer_Tasha 10 44,918,820 - 45,028,547 (+) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 10 45,867,960 - 45,977,877 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 10 45,868,246 - 45,977,833 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 10 45,579,723 - 45,689,390 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 10 45,865,805 - 45,975,828 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 10 46,049,164 - 46,159,214 (+) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
Fam178b
FAM178B
FAM178B Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 14 1,204,642 - 1,303,606 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 14 1,203,885 - 1,317,560 (-) Ensembl ChlSab1.1 Ensembl chlSab2 Vervet-AGM Vero_WHO_p1.0 NW_023666041 168,642,717 - 168,680,804 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Fam178b
Fam178b
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 154 Count of miRNA genes: 119 Interacting mature miRNAs: 126 Transcripts: ENSRNOT00000022314, ENSRNOT00000037570 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction 
