Gene-Chemical Interaction Annotations
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References
References - curated
Genomics
Comparative Map Data
Variants
QTLs in Region (GRCr8)
RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | 2313089 | Bss81 | Bone structure and strength QTL 81 | 3.4 | 0.0001 | body length (VT:0001256) | body length, nose to rump (CMO:0000079) | 14 | 38023710 | 83023710 | Rat | 9590294 | Uminl4 | Urine mineral level QTL 4 | 5.66 | 0.001 | urine mineral amount (VT:0015086) | urine electrolyte level (CMO:0000593) | 14 | 59848686 | 104848686 | Rat | 1582236 | Gluco22 | Glucose level QTL 22 | 3.3 | 0.0164 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 14 | 77640071 | 96755654 | Rat | 2300197 | Scl59 | Serum cholesterol level QTL 59 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 14 | 77914838 | 104348525 | Rat | 70214 | Niddm28 | Non-insulin dependent diabetes mellitus QTL 28 | 4.06 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 14 | 39009444 | 84009444 | Rat | 70153 | Bp59 | Blood pressure QTL 59 | 3.2 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 14 | 72970210 | 87582095 | Rat | 70187 | Pancm5 | Pancreatic morphology QTL 5 | 16.7 | pancreas mass (VT:0010144) | pancreas weight to body weight ratio (CMO:0000630) | 14 | 30674469 | 85041098 | Rat | 631523 | Pia13 | Pristane induced arthritis QTL 13 | 3.3 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 14 | 33424686 | 102238540 | Rat | 1582259 | Gluco23 | Glucose level QTL 23 | 3.1 | 0.0008 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 14 | 74255551 | 109089856 | Rat | 1582197 | Gluco27 | Glucose level QTL 27 | 3.4 | 0.0006 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 14 | 77640071 | 96755654 | Rat | 2313100 | Bss82 | Bone structure and strength QTL 82 | 3 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 14 | 38023710 | 83023710 | Rat | 634328 | Hc5 | Hypercalciuria QTL 5 | 2.3 | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 14 | 62398852 | 107398852 | Rat | 1582250 | Gluco26 | Glucose level QTL 26 | 3.3 | 0.0009 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 14 | 77640071 | 100078267 | Rat | 2317879 | Alcrsp27 | Alcohol response QTL 27 | 3.3 | 0.63 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 14 | 60854936 | 105854936 | Rat | 1641900 | Alcrsp11 | Alcohol response QTL 11 | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 14 | 74255551 | 109089856 | Rat | 631839 | Niddm37 | Non-insulin dependent diabetes mellitus QTL 37 | 3.37 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 14 | 11334716 | 100078267 | Rat | 1582255 | Gluco29 | Glucose level QTL 29 | 3.1 | 0.0025 | blood glucose amount (VT:0000188) | absolute change in blood glucose level area under curve (CMO:0002034) | 14 | 77640071 | 96755654 | Rat | 9589034 | Epfw11 | Epididymal fat weight QTL 11 | 6 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 14 | 59848686 | 104848686 | Rat | 1582209 | Gluco20 | Glucose level QTL 20 | 3.8 | 0.0005 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 14 | 77640071 | 96755654 | Rat | 2313048 | Bss84 | Bone structure and strength QTL 84 | 3.1 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 14 | 38023710 | 83023710 | Rat | 1300136 | Rf22 | Renal function QTL 22 | 3.9 | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 14 | 42616258 | 99224555 | Rat | 1549834 | Scl45 | Serum cholesterol level QTL 45 | 5.8 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 14 | 65920283 | 99224555 | Rat | 738037 | Hcas6 | Hepatocarcinoma susceptibility QTL 6 | 2.93 | liver integrity trait (VT:0010547) | liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464) | 14 | 39411170 | 87582095 | Rat | 2313084 | Bss83 | Bone structure and strength QTL 83 | 2.9 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 14 | 38023710 | 83023710 | Rat | | 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Watched Genes
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Watched Ontology Terms
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Expression
RNA-SEQ Expression
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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| 13 | 10 | 49 | 163 | 69 | 68 | 37 | 91 | 37 | 6 | 310 | 171 | 11 | 142 | 81 | 91 | 31 | 17 | 17 |
Sequence
Nucleotide Sequences
| Ensembl Acc Id: | ENSRNOT00000078252 ⟹ ENSRNOP00000072499 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000099514 ⟹ ENSRNOP00000089012 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_008770377 ⟹ XP_008768599 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017599502 ⟹ XP_017454991 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017599503 ⟹ XP_017454992 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017599504 ⟹ XP_017454993 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_039092827 ⟹ XP_038948755 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039092828 ⟹ XP_038948756 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039092829 ⟹ XP_038948757 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039092833 ⟹ XP_038948761 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_039092834 ⟹ XP_038948762 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | XM_063273835 ⟹ XP_063129905 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063273836 ⟹ XP_063129906 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063273837 ⟹ XP_063129907 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063273838 ⟹ XP_063129908 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063273839 ⟹ XP_063129909 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_063273840 ⟹ XP_063129910 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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Protein Sequences
| RefSeq Acc Id: | XP_008768599 ⟸ XM_008770377 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I6A7Q4 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_017454993 ⟸ XM_017599504 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
| RefSeq Acc Id: | XP_017454992 ⟸ XM_017599503 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
| RefSeq Acc Id: | XP_017454991 ⟸ XM_017599502 |
| - Peptide Label: | isoform X2 |
| - UniProtKB: | A0A0G2K347 (UniProtKB/TrEMBL) |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000072499 ⟸ ENSRNOT00000078252 |
| RefSeq Acc Id: | XP_038948755 ⟸ XM_039092827 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I6A7Q4 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_038948756 ⟸ XM_039092828 |
| - Peptide Label: | isoform X3 |
| RefSeq Acc Id: | XP_038948757 ⟸ XM_039092829 |
| - Peptide Label: | isoform X5 |
| RefSeq Acc Id: | XP_038948761 ⟸ XM_039092833 |
| - Peptide Label: | isoform X6 |
| RefSeq Acc Id: | XP_038948762 ⟸ XM_039092834 |
| - Peptide Label: | isoform X7 |
| Ensembl Acc Id: | ENSRNOP00000089012 ⟸ ENSRNOT00000099514 |
| RefSeq Acc Id: | XP_063129907 ⟸ XM_063273837 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I6A7Q4 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_063129906 ⟸ XM_063273836 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I6A7Q4 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_063129905 ⟸ XM_063273835 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I6A7Q4 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_063129909 ⟸ XM_063273839 |
| - Peptide Label: | isoform X3 |
| RefSeq Acc Id: | XP_063129908 ⟸ XM_063273838 |
| - Peptide Label: | isoform X2 |
| - UniProtKB: | A0A0G2K347 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: | XP_063129910 ⟸ XM_063273840 |
| - Peptide Label: | isoform X7 |
Protein Structures
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-A0A0G2K347-F1-model_v2 | AlphaFold | A0A0G2K347 | 1-651 | view protein structure |
Transcriptome
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
Promoters
| RGD ID: | 13699403 | ||||||||
| Promoter ID: | EPDNEW_R9927 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Cfap99_1 | ||||||||
| Description: | cilia and flagella associated protein 99 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Additional Information
External Database Links
| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1564567 | AgrOrtholog |
| BioCyc Gene | G2FUF-15288 | BioCyc |
| Ensembl Genes | ENSRNOG00000058434 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000078252 | ENTREZGENE |
| ENSRNOT00000078252.3 | UniProtKB/TrEMBL | |
| InterPro | CFAP99 | UniProtKB/TrEMBL |
| NCBI Gene | 305453 | ENTREZGENE |
| PANTHER | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 99 | UniProtKB/TrEMBL |
| PTHR34649 | UniProtKB/TrEMBL | |
| PhenoGen | Cfap99 | PhenoGen |
| RatGTEx | ENSRNOG00000058434 | RatGTEx |
| UniProt | A0A0G2K347 | ENTREZGENE, UniProtKB/TrEMBL |
| A0A8I6A7Q4 | ENTREZGENE |
Nomenclature History
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2014-09-11 | Cfap99 | cilia and flagella associated protein 99 | RGD1564567 | similar to CG14998-PC, isoform C | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | RGD1564567 | similar to CG14998-PC, isoform C | RGD1564567_predicted | similar to CG14998-PC, isoform C (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2006-03-07 | RGD1564567_predicted | similar to CG14998-PC, isoform C (predicted) | LOC305453 | similar to CG14998-PC, isoform C | Symbol and Name status set to approved | 1299863 | APPROVED |
| 2006-02-09 | LOC305453 | similar to CG14998-PC, isoform C | Symbol and Name status set to provisional | 70820 | PROVISIONAL |