Advanced Search (OLGA)

Gene: Nutm1 (NUT midline carcinoma, family member 1) Rattus norvegicus

Analyze

Symbol:

Nutm1

Name:

NUT midline carcinoma, family member 1

RGD ID:

1564529

Description:

Orthologous to human NUTM1 (NUT midline carcinoma family member 1); INTERACTS WITH bisphenol A; paracetamol; trichloroethene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC366153; nuclear protein in testis; Nut; NUT family member 1; RGD1564529; similar to nuclear protein in testis

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	119,507,908 - 119,518,709 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	119,507,908 - 119,526,185 (-)	Ensembl				GRCr8
mRatBN7.2	3	99,053,510 - 99,064,311 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	99,053,510 - 99,064,311 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	102,681,352 - 102,692,140 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	111,280,344 - 111,291,132 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	108,975,966 - 108,986,767 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	103,733,981 - 103,745,242 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	103,734,435 - 103,745,236 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	110,328,291 - 110,340,104 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	98,091,935 - 98,102,736 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	98,039,387 - 98,050,188 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

afimoxifene (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

bisphenol A (EXP)

D-glucose (ISO)

glucose (ISO)

lipopolysaccharide (ISO)

methotrexate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

tebuconazole (ISO)

trichloroethene (EXP)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Nutm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	119,507,908 - 119,518,709 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	119,507,908 - 119,526,185 (-)	Ensembl				GRCr8
mRatBN7.2	3	99,053,510 - 99,064,311 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	99,053,510 - 99,064,311 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	102,681,352 - 102,692,140 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	111,280,344 - 111,291,132 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	108,975,966 - 108,986,767 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	103,733,981 - 103,745,242 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	103,734,435 - 103,745,236 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	110,328,291 - 110,340,104 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	98,091,935 - 98,102,736 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	98,039,387 - 98,050,188 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

NUTM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	34,343,315 - 34,357,735 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	34,343,315 - 34,357,737 (+)	Ensembl			hg38	GRCh38
GRCh37	15	34,635,516 - 34,649,936 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	32,425,358 - 32,437,225 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	11,440,706 - 11,454,967 (+)	NCBI		Celera
Cytogenetic Map	15	q14	NCBI
HuRef	15	11,501,494 - 11,515,478 (+)	NCBI		HuRef
CHM1_1	15	34,756,122 - 34,767,984 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	32,141,620 - 32,158,194 (+)	NCBI		T2T-CHM13v2.0

Nutm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	112,078,293 - 112,089,636 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	112,078,293 - 112,089,636 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	112,247,948 - 112,259,291 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	112,247,948 - 112,259,291 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	112,088,105 - 112,099,448 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	112,048,787 - 112,060,130 (-)	NCBI		MGSCv36	mm8
Celera	2	113,405,375 - 113,416,686 (-)	NCBI		Celera
Cytogenetic Map	2	E3	NCBI
cM Map	2	56.97	NCBI

Nutm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	258,202 - 270,075 (-)	Ensembl
ChiLan1.0	NW_004955416	258,304 - 271,670 (-)	NCBI	ChiLan1.0	ChiLan1.0

NUTM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	23,125,213 - 23,142,965 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	27,847,105 - 27,864,735 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	12,852,280 - 12,868,873 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	31,686,443 - 31,703,128 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	31,686,443 - 31,703,128 (+)	Ensembl			panPan2	panpan1.1

NUTM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	755,267 - 766,473 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	799,677 - 810,656 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	851,503 - 862,491 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	851,503 - 859,847 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	799,915 - 810,879 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	898,795 - 909,833 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	1,026,482 - 1,037,456 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nutm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	79,308,900 - 79,321,348 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936673	2,832,400 - 2,842,703 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936673	2,832,447 - 2,843,428 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUTM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	80,149,619 - 80,160,620 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	80,149,764 - 80,159,497 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	86,146,938 - 86,156,848 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUTM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	48,547,889 - 48,560,897 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	48,548,133 - 48,560,731 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	92,342,855 - 92,359,924 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nutm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	4,128,279 - 4,139,185 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624825	4,126,311 - 4,140,100 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nutm1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	90,573,416 - 90,584,669 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nutm1
37 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	200
Count of miRNA genes:	148
Interacting mature miRNAs:	157
Transcripts:	ENSRNOT00000006876
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1582252	Sual1	Serum uric acid level QTL 1	3.4	0.0123	blood uric acid amount (VT:0010302)	blood uric acid level (CMO:0000501)	3	116582412	122654872	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	2	16	58	33	36	9	70	9	6	161	100	1	48	34	81	27	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006876 ⟹ ENSRNOP00000006876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	119,507,908 - 119,526,185 (-)	Ensembl
mRatBN7.2 Ensembl	3	99,053,510 - 99,064,311 (-)	Ensembl
Rnor_6.0 Ensembl	3	103,734,435 - 103,745,236 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125403 ⟹ ENSRNOP00000107548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	119,507,908 - 119,520,903 (-)	Ensembl

RefSeq Acc Id:

NM_001108957 ⟹ NP_001102427

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	119,507,908 - 119,518,709 (-)	NCBI
mRatBN7.2	3	99,053,510 - 99,064,311 (-)	NCBI
Rnor_6.0	3	103,734,435 - 103,745,236 (-)	NCBI
Rnor_5.0	3	110,328,291 - 110,340,104 (-)	NCBI
RGSC_v3.4	3	98,091,935 - 98,102,736 (-)	RGD
Celera	3	98,039,387 - 98,050,188 (-)	RGD

Sequence:

show sequence

TTCCTTGGATATCATCTGTTGGAGCTAGGTCATTGCCTGGATCCTGGACCCAACTGTTTCATCC
TGGAGCCATCCAGACCGCCACTGTTGGTGTACCTAAACCCTGGGTTATGGCATCAGATGGATCC
TCTCCATTACCAGGACCAGATATGGCCATGAAACCTGGTACTGGCCTGTCCCCTTTCAGTACAC
TTCCCTTTGCCCCACCTCCTCCCATTCCACCAGACCAATCCCTCTGGGAGCCATCACCACAGCC
CCCTATACCGCCTGTCTTCTCTCCAGGCAATCCTCTGCTCCTTTCTGCTTTCCCCAGCCCATTG
TTGGTGACAGGAGAAGGAGGCCCTGGCCCCAGTGTGGCTGGAACTGGCCAGGTCATTGTCAAAG
TCAAGACAGATGTGGGGCCAGCTGAGTCCTCTCAAACTCAGAACCTTATAGTTACTCAGACGGC
CCTAAACTGGATTCACTCAGGTGCTCCCTGTGGGAGCCAGGAGGGGCCTCCTCCTCGATATGTG
ACAGCCTCTAATGTGAAGACCATCCTGCCTGCCGTGGCTGTTGGAGTGAGCCAGGAGGGCCCTG
CAGGACTTCCCCTGCAGGTACTACCACCAGCTGCCCAGCTGGCTCCCATTGTGCCCCTGGAAAA
GCCCTGGCCAGGAACACAAGCAACAACCATGGAAGGAGGTCCTGTGGCTGTTCGGAAGCCCTCT
CAAGGTGATCTTGCCTATGCTTCCAAGGGCGTTTATGAGAACTATCGTCGCTGGCAGCGCTACA
AAGTCTTGGCCCGGACTCACCTATCCCAGAGTCCTGATGCAGAAGCTCTTTCCTGCTTTCTTAT
CCCAGTGCTTCGTTCCCTGGCCCGGCTGAAGCCTACTATGACCTTGGAGGAGGGACTGCCGAGG
GCTCTGCAGGAATGGGAGCGTACCAGCAACTTTGACCGGATGATCTTTTATGAGATGGCAGAGA
AGTTCATGGAGTTTGAGGCTGAGGAGGAAACACAGATACAGAATGCACAGTTGATGAATGGCTC
CCCGGGTCTGTCCCCTATAGCTCCTTTGAAACTTGATCCTCCAGGGCCCATGGTCCCTGAGTCT
TGCCAGCAGCCAGTGTACATTCCAAAGAAGGCAGCCTCTAAGACACGGGCTCCCCGTCGGCGGC
AACGCAAACCCCAAAGGCCTCCAGTTCCTGAGGCACCCAAAGAGATCCCACCTGAAGCCGTGCA
AGAATATATTGACATCATGGACGGGTTGATGGGGAACAATGTGGACACTGGGAAGACAGAGGAG
GAAGAGGGGCAGCAGGAAGATGCAGGGATGTATCCCGATCCAAGTCTTCTGAGCTACATTGATG
AACTATGTTCTCAGGAGGTCTTTGTCTCCAAGGTGGAGGCGGTCATTCACCCTCAATTTCTGGC
AGATCTGCTGTCCCCAGAAGAGCAGAGAGATCCTTTGGCTTTAATTGAGGAGCTAGAGCAAGAA
GAAGGACTTACTCTTGCCCAGCTGGTCCAAAAACGACTCCTGGCCCTGGAGGAGGAAGACGCAC
AGGCGCCTCCGAGTTGCAGCGGAGCTCAGTCAGACTCGAGTCCTTCTGTTTCTGATGAGGATGA
AGATGGGGGTCAAAGGCGTCGACCCTCGCCTGGGCTTCAGGGGGCTGCGGGTATTGTTCGCATT
GGAAAATCTGCTTCTCCAGGCAAGCAGGCAAGGGAAATGCATGGTGGGCAGGAACAAACACTAG
GTGGTCCAAGGGGGGTTCACAAGGATGGAAATAGTCTGCCATCCCCTAGCAGCTGGGACCTGCA
GCTAGAGCACACAGCTTCCCAGGGAATGCAAGTACCCTTGGGTATGGAGAGAAAAGGCTCTGGG
AAGGCTATAAAACAGCTACCTGCAACTCAGGATGGCCACCCAGGAGGTACAGGGTCATCTGGGC
ACTACCCAGTAGCAGACAGGAATCCAGAGGTTATACCTTTTTGTTGGCAAGAGGATCTCCAACA
CGTGAGAGCCTCCAATTTGGATGTTGGACATATAGAGCCAGTTCCTCTGCAGGGACTTGGGTTA
GAAAAACAGGCTTTGGTGTTGCAGATAGGACAGCAGATTGGGGGAGCTGGGATGCTTACTAAAG
GAAGAGAACAACCTTCAGTGGTTCCCCAGAAGGGCTCTTCAAGAGCCATGTGGGGAGATGACAG
AGGTCCTGATGTGGTTCAGAGTTACGGTCAGAACCATTCCCCTGGAGCAGCTGGCAACCTAGAC
GTGGTTTCTCTCACCCCAGGACTGTGGCTGAGCAGTGACATGGAGGCTGTAGGCTTAGAGTTTC
CCTTACAAATCGAAAATGTTACAGAAAGCATCCGGGATGAAGCATTTAAAAGGGAGGACCAGGC
CCCAGGTTCTAGAAACAGTGCCTCTCCAGGTACTAGGAAAAACAAAGTGCCCAAGGATGTGGGA
AAGAGCATGATTCCCTGTGGAGGCACAGATAAAACAACTGTCCCAGAAATGAGAAAGTCCTGCA
GCTTGCCGGGACCTTTGATGGCCAGTGGTCCAGGTTTGAGGTCCAAAGAAAAGCAAGAGCGGAG
CCCTGAAGCCACACAGAATCCCAGTGACCTGTGGGCTGAGGCTTGCTCCCCACTGCTGCAAACA
CCTGACCCTTCCACACTGGGGTCCTCCAAAGACACCCTGGTACCCACGTGCCAAGGCACTCTTC
TCATTGTTGGGACCCAGGATGCCTCCTCTTTCCCCGAGGCTAGCCAAAAGGCAGACAGCAGGGG
TAATCTACTTTTTCCTCTGTTGGAAAACATAGAACAGGTCAAATTACTAGATGTTAGAAATGAC
AGTGGCCCCCAACCAGGGGTCTGCAAGGACTCCTGCTCATCAAATTTTAATTCTTTTAACCCCC
AAGGAGAGTGCAGGGAAGACACTGTTTCCTCCAAACCCACTGACCTTGTTCCTTTACAAGGCAA
CCGGGAGTCTTATACACATGAGACAACCAAATCGACATCTGGCCAGGGCCAGGGCAGAACTTCC
CCAAGGTGGGGAACCAGGGAGGCTTTGGTTCTGAGAGAAATCCCTGTTAGAGAAACATGCACCT
CAGCCGATACAGCCAAAGGAAGTGAGACAGAGAAGGAGGAAGATGAAGAACTCTCCAACTTCTC
CTACCTTTTGGCTTCAAAACTTAACCTCTCTTCAGGAGGGCTTCCCCTTAGTACTCGTCATGCC
CCTAGAGGTCAGGGAATCGTGAGAACATCCCGCCATTCTGCTGAAGTAGATGACCTCGGCCAGC
CTTCACCCCCTCCCAAGTCTGGGAAGCAAGCTCTAGTTGGGAGTCCAGCTCCTGTTGTAGAGAG
ACCAGGGCAAGGAGCTCAGCTTAATTCTGGGCAGAAACCCCTTGCTCTGGGAGTGGCACAGCTC
CCACAGCCTCGTAATAAAAGGCGGCGTGACGGTTTTGTCACCAGCAAAAGGAAGAAACGACGTC
GTAGCCAGTAGGAAGCAAAGGGCCACCCTGCTCCATCTAGCAGCACCCAAAGGTGGGTGTCCCA
GAGTCTGTTTTACTGCTGCTGCTCCCCCAGTGGAAAAGCAACCTCAGCCCAGTGCTGCTTTTGT
TGTTGTGCTAGAAGTTGGAAAGCCTGGGGCAGGTCAGCCTGGCTATGAAGGCAAAGTTTGGCTT
TGGGAAGCTAAATGGAAAAATAAAGATTGTTTTTTGTTGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102427	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79795	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006876
	ENSRNOP00000006876.7
	ENSRNOP00000107548.1

RefSeq Acc Id:

NP_001102427 ⟸ NM_001108957

- UniProtKB:

D3ZMR4 (UniProtKB/TrEMBL), A6HP44 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASDGSSPLPGPDMAMKPGTGLSPFSTLPFAPPPPIPPDQSLWEPSPQPPIPPVFSPGNPLLLS
AFPSPLLVTGEGGPGPSVAGTGQVIVKVKTDVGPAESSQTQNLIVTQTALNWIHSGAPCGSQEG
PPPRYVTASNVKTILPAVAVGVSQEGPAGLPLQVLPPAAQLAPIVPLEKPWPGTQATTMEGGPV
AVRKPSQGDLAYASKGVYENYRRWQRYKVLARTHLSQSPDAEALSCFLIPVLRSLARLKPTMTL
EEGLPRALQEWERTSNFDRMIFYEMAEKFMEFEAEEETQIQNAQLMNGSPGLSPIAPLKLDPPG
PMVPESCQQPVYIPKKAASKTRAPRRRQRKPQRPPVPEAPKEIPPEAVQEYIDIMDGLMGNNVD
TGKTEEEEGQQEDAGMYPDPSLLSYIDELCSQEVFVSKVEAVIHPQFLADLLSPEEQRDPLALI
EELEQEEGLTLAQLVQKRLLALEEEDAQAPPSCSGAQSDSSPSVSDEDEDGGQRRRPSPGLQGA
AGIVRIGKSASPGKQAREMHGGQEQTLGGPRGVHKDGNSLPSPSSWDLQLEHTASQGMQVPLGM
ERKGSGKAIKQLPATQDGHPGGTGSSGHYPVADRNPEVIPFCWQEDLQHVRASNLDVGHIEPVP
LQGLGLEKQALVLQIGQQIGGAGMLTKGREQPSVVPQKGSSRAMWGDDRGPDVVQSYGQNHSPG
AAGNLDVVSLTPGLWLSSDMEAVGLEFPLQIENVTESIRDEAFKREDQAPGSRNSASPGTRKNK
VPKDVGKSMIPCGGTDKTTVPEMRKSCSLPGPLMASGPGLRSKEKQERSPEATQNPSDLWAEAC
SPLLQTPDPSTLGSSKDTLVPTCQGTLLIVGTQDASSFPEASQKADSRGNLLFPLLENIEQVKL
LDVRNDSGPQPGVCKDSCSSNFNSFNPQGECREDTVSSKPTDLVPLQGNRESYTHETTKSTSGQ
GQGRTSPRWGTREALVLREIPVRETCTSADTAKGSETEKEEDEELSNFSYLLASKLNLSSGGLP
LSTRHAPRGQGIVRTSRHSAEVDDLGQPSPPPKSGKQALVGSPAPVVERPGQGAQLNSGQKPLA
LGVAQLPQPRNKRRRDGFVTSKRKKRRRSQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000006876 ⟸ ENSRNOT00000006876

Ensembl Acc Id:

ENSRNOP00000107548 ⟸ ENSRNOT00000125403

Protein Domains

Nuclear Testis protein N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMR4-F1-model_v2	AlphaFold	D3ZMR4	1-1118	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692287

Promoter ID:

EPDNEW_R2812

Type:

multiple initiation site

Name:

Nutm1_1

Description:

NUT midline carcinoma, family member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	103,745,239 - 103,745,299	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564529	AgrOrtholog
BioCyc Gene	G2FUF-48394	BioCyc
Ensembl Genes	ENSRNOG00000005111	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006876	ENTREZGENE
	ENSRNOT00000006876.7	UniProtKB/TrEMBL
	ENSRNOT00000125403.1	UniProtKB/TrEMBL
InterPro	NUT/FAM22	UniProtKB/TrEMBL
	NUT_N	UniProtKB/TrEMBL
KEGG Report	rno:366153	UniProtKB/TrEMBL
NCBI Gene	366153	ENTREZGENE
PANTHER	NUT FAMILY MEMBER 1	UniProtKB/TrEMBL
	PTHR22879	UniProtKB/TrEMBL
Pfam	NUT_N	UniProtKB/TrEMBL
PhenoGen	Nutm1	PhenoGen
RatGTEx	ENSRNOG00000005111	RatGTEx
UniProt	A0ABK0LYU2_RAT	UniProtKB/TrEMBL
	A6HP44	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMR4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-03-20	Nutm1	NUT midline carcinoma, family member 1	Nut	nuclear protein in testis	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Nut	nuclear protein in testis	RGD1564529_predicted	similar to nuclear protein in testis (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564529_predicted	similar to nuclear protein in testis (predicted)	LOC366153	similar to nuclear protein in testis	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC366153	similar to nuclear protein in testis			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message