Advanced Search (OLGA)

Gene: Sqor (sulfide quinone oxidoreductase) Rattus norvegicus

Analyze

Symbol:

Sqor

Name:

sulfide quinone oxidoreductase

RGD ID:

1564504

Description:

Predicted to enable FAD binding activity; glutathione-dependent sulfide quinone oxidoreductase activity; and sulfide:quinone oxidoreductase activity. Predicted to be involved in sulfide oxidation, using sulfide:quinone oxidoreductase. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human SQOR (sulfide quinone oxidoreductase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cc2-17; LOC691966; similar to Sulfide:quinone oxidoreductase, mitochondrial precursor; Sqrdl; sulfide quinone reductase-like; sulfide quinone reductase-like (yeast); sulfide:quinone oxidoreductase, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SQOR (sulfide quinone oxidoreductase)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther
Mus musculus (house mouse):	Sqor (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sqor (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SQOR (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SQOR (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sqor (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SQOR (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SQOR (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sqor (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sqor (sulfide quinone oxidoreductase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRIM36 (tripartite motif containing 36)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SQOR (sulfide quinone oxidoreductase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sqor (sulfide quinone oxidoreductase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14997	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y9C9A.16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sqor	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sqrd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sqor	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sqor	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	130,294,783 - 130,341,655 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	130,292,814 - 130,340,799 (+)	Ensembl				GRCr8
mRatBN7.2	3	109,841,225 - 109,886,724 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	109,841,250 - 109,960,778 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	113,742,553 - 113,783,815 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	122,338,087 - 122,379,345 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	119,998,460 - 120,039,731 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	114,894,944 - 114,939,375 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	114,900,343 - 114,939,370 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	121,433,075 - 121,477,304 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	109,743,347 - 109,752,321 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	108,724,668 - 108,764,086 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

SULFIDE:QUINONE OXIDOREDUCTASE DEFICIENCY (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,6-dimethoxyphenol (ISO)

2-hydroxypropanoic acid (ISO)

2-tert-butylhydroquinone (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

captan (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

epoxiconazole (ISO)

folpet (ISO)

furfural (ISO)

glafenine (EXP)

Heptachlor epoxide (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

lithium chloride (ISO)

menadione (ISO)

N-nitrosodimethylamine (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

progesterone (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium dichromate (ISO)

sodium fluoride (ISO)

succimer (ISO)

sunitinib (ISO)

tacrolimus hydrate (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

tremolite asbestos (ISO)

triphenyl phosphate (ISO)

Triptolide (EXP)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

sulfide oxidation, using sulfide:quinone oxidoreductase (IBA,IEA,ISO)

sulfur compound metabolic process (IEA)

Cellular Component

mitochondrial inner membrane (TAS)

mitochondrion (IBA,IEA,ISO)

Molecular Function

FAD binding (IBA)

glutathione-dependent sulfide quinone oxidoreductase activity (IEA,ISO)

oxidoreductase activity (IEA)

quinone binding (IEA)

sulfide:quinone oxidoreductase activity (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12865426	PMID:14651853	PMID:15632090	PMID:18614015	PMID:22067608	PMID:22852582	PMID:25130143	PMID:28107627	PMID:34800366

Genomics

Comparative Map Data

Sqor
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	130,294,783 - 130,341,655 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	130,292,814 - 130,340,799 (+)	Ensembl				GRCr8
mRatBN7.2	3	109,841,225 - 109,886,724 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	109,841,250 - 109,960,778 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	113,742,553 - 113,783,815 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	122,338,087 - 122,379,345 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	119,998,460 - 120,039,731 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	114,894,944 - 114,939,375 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	114,900,343 - 114,939,370 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	121,433,075 - 121,477,304 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	109,743,347 - 109,752,321 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	108,724,668 - 108,764,086 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

SQOR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	45,631,148 - 45,691,281 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	45,631,148 - 45,691,299 (+)	Ensembl			hg38	GRCh38
GRCh37	15	45,923,346 - 45,983,479 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	43,714,548 - 43,770,771 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	43,714,547 - 43,770,770	NCBI
Celera	15	22,818,429 - 22,874,655 (+)	NCBI		Celera
Cytogenetic Map	15	q21.1	NCBI
HuRef	15	22,745,909 - 22,806,168 (+)	NCBI		HuRef
CHM1_1	15	46,041,503 - 46,101,610 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	43,439,309 - 43,499,454 (+)	NCBI		T2T-CHM13v2.0

Sqor
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	122,607,249 - 122,651,473 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	122,607,157 - 122,651,489 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	122,765,327 - 122,809,553 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	122,765,237 - 122,809,569 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	122,591,095 - 122,635,289 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	122,473,440 - 122,500,994 (+)	NCBI		MGSCv36	mm8
Celera	2	123,961,497 - 124,004,658 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.67	NCBI

Sqor
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	7,831,636 - 7,877,562 (-)	Ensembl
ChiLan1.0	NW_004955409	7,831,698 - 7,857,249 (-)	NCBI	ChiLan1.0	ChiLan1.0

SQOR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	34,868,713 - 34,929,723 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	39,045,421 - 39,106,342 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	24,575,863 - 24,636,798 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	42,905,604 - 42,965,538 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	42,908,532 - 42,965,538 (+)	Ensembl			panPan2	panpan1.1

SQOR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	11,956,335 - 12,004,770 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	11,956,366 - 12,004,765 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	11,946,492 - 11,994,392 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	12,093,105 - 12,141,211 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	11,948,076 - 12,141,202 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	12,014,483 - 12,062,700 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	12,120,430 - 12,168,835 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	12,240,771 - 12,289,177 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sqor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	90,400,129 - 90,448,325 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	8,248,172 - 8,296,383 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	8,248,195 - 8,296,369 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SQOR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	126,076,161 - 126,137,062 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	126,078,335 - 126,137,407 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	140,423,110 - 140,435,921 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SQOR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	37,533,807 - 37,588,749 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	37,533,749 - 37,567,124 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	103,469,002 - 103,551,221 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sqor
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	13,708,866 - 13,778,415 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	13,709,278 - 13,758,630 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sqor
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	100,852,597 - 100,893,375 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sqor
384 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	21
Count of miRNA genes:	20
Interacting mature miRNAs:	21
Transcripts:	ENSRNOT00000068129
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	122654702	136118980	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

RH127460

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	109,885,457 - 109,885,659 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	114,939,142 - 114,939,343	NCBI	Rnor6.0
Rnor_5.0	3	121,477,071 - 121,477,272	UniSTS	Rnor5.0
RGSC_v3.4	3	109,752,088 - 109,752,289	UniSTS	RGSC3.4
Celera	3	108,763,853 - 108,764,054	UniSTS
RH 3.4 Map	3	964.8	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH129296

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	109,885,473 - 109,885,654 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	114,939,158 - 114,939,338	NCBI	Rnor6.0
Rnor_5.0	3	121,477,087 - 121,477,267	UniSTS	Rnor5.0
RGSC_v3.4	3	109,752,104 - 109,752,284	UniSTS	RGSC3.4
Celera	3	108,763,869 - 108,764,049	UniSTS
RH 3.4 Map	3	964.8	UniSTS
Cytogenetic Map	3	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001047913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY325246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068129 ⟹ ENSRNOP00000061547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	130,292,814 - 130,339,268 (+)	Ensembl
mRatBN7.2 Ensembl	3	109,841,280 - 109,885,691 (+)	Ensembl
Rnor_6.0 Ensembl	3	114,900,343 - 114,939,370 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089204 ⟹ ENSRNOP00000074060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	130,292,814 - 130,321,684 (+)	Ensembl
mRatBN7.2 Ensembl	3	109,841,250 - 109,868,104 (+)	Ensembl
Rnor_6.0 Ensembl	3	114,918,648 - 114,921,784 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094867 ⟹ ENSRNOP00000085049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	130,300,216 - 130,340,799 (+)	Ensembl
mRatBN7.2 Ensembl	3	109,841,250 - 109,887,228 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095311 ⟹ ENSRNOP00000089443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	109,841,250 - 109,960,778 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109473 ⟹ ENSRNOP00000082267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	109,841,250 - 109,884,896 (+)	Ensembl

RefSeq Acc Id:

NM_001047913 ⟹ NP_001041378

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	130,300,231 - 130,339,274 (+)	NCBI
mRatBN7.2	3	109,846,650 - 109,885,691 (+)	NCBI
Rnor_6.0	3	114,900,343 - 114,939,375 (+)	NCBI
Rnor_5.0	3	121,433,075 - 121,477,304 (+)	NCBI
RGSC_v3.4	3	109,743,347 - 109,752,321 (+)	RGD
Celera	3	108,724,668 - 108,764,086 (+)	RGD

Sequence:

show sequence

CAAGCCATGGCACAACAGCCTGATCTACCCTGGTGATGGCCCCACTGGTTGCTGTTGTATCCAG
TCCACGTGCCCGGCTCTTTGCTTGTTTCCTTAGGCTGGGCACTCAGCAGGCTGGACCCCTCCAA
TTGCATACGGGAGCCTGCTGCACAGCCAAGAACCACTATGAGGTGCTGGTACTTGGTGGGGGAA
GTGGTGGGATCACCATGGCCACTCGCATGAAGAGGAGAGTTGGAGCGGAGAATGTGGCCATTGT
TGAACCCAGTGAGAGGCATTTCTACCAGCCAATCTGGACACTAGTGGGTGCTGGTGCCAAAGAG
CTGTCCTCATCGGACCGTTCTACACTGAGTGTGATTCCATCCGGTGTGCAGTGGATTCAAGATA
GAGTGGCGGAACTGAACCCAGATCAGAACTGTATCCGCACAGACAATGGCAAGGAGATCTCCTA
CAGATATCTTATCATCGCTCTTGGAATCCAGCTGGACTATGAGAAGATTAAAGGACTACCTGAA
GGCTTTGCTTATCCAAAAATAGGGTCCAATTACTCAGTTAAGACAGTGGAGAAGACATGGAAGG
CCCTGCAGGACTTCAAGGAAGGCAATGCCCTTTTCACCTTCCCAAACACTCCAGTGAAGTGTGC
TGGTGCCCCCCAGAAGATCATGTACCTATCGGAAGCCTACTTCAGAAAGACTGGAAAGCGATCC
AAGGCTAATATCATCTTCAACACAGCCCTTGGAACAATTTTTGGAGTTAAGAAGTACGCAGATG
CTTTGCAGGAGATCATTCGGGAGAGGAACGTTTCTGTCAACTATAAGCACAATCTTATTGAGGT
CCGAGCTGACAAACAGGAGGCTGTTTTTGAGAACCTGGACAAGCCTGGGGAGACACATGTGATT
CATTATGAAATGCTTCACGTCACGCCACCCATGAGCTCGCCAGATGTCCTCAAGAGGAGTCCTG
TGGCCGATTCTGCTGGCTGGGTGGACGTGGATAAGGAGACTCTGCAGCATAAGAAATACCCGAA
TGTGTTTGGCATCGGGGACTGCACCAACCTCCCAACTTCAAAGACGGCTGCTGCAGTAGCTGCC
CAATCTGGAATCCTTGATAGAACAATTTCTCTGATTATGAAGAATCAAACACCCACAAAAAAGT
ATGATGGCTATACCTCGTGCCCACTGGTGACTGGTTACAACCGTGTGATTCTTGCTGAGTTTGA
CTACACAGCTCAGCCTCTGGAAACCTTCCCCTTTGATCAGAGTAAAGAACGAATTTCCATGTAC
CTCATGAAGGCTGACATGATGCCGTTCCTGTATTGGAATATGATGCTAAGAGGCTACTGGGGAG
GTCCAGCCTTCTTGCGAAAGCTGTTTCATCTGGGCCTGAGTTAAAGATGGCTCAGCACTTGCTC
TTTTTGGATGATGTCTGGACCAAAATCACAGTTACTGATTGACATGACAGATCCAAAGGACTCA
GAATCTTACCCTTTAAGGAGTTTCTTACTGGACATGATGACCTTTCTAGACCTCTGAATAGCTA
TCATGTGAACAACCCAGAATGAGTCTTTGGAAACATCCAAAATAAAATTCTATTTTATAAATAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234887 ⟹ XP_006234949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	130,294,783 - 130,339,274 (+)	NCBI
mRatBN7.2	3	109,841,225 - 109,885,691 (+)	NCBI
Rnor_6.0	3	114,894,944 - 114,939,375 (+)	NCBI
Rnor_5.0	3	121,433,075 - 121,477,304 (+)	NCBI

Sequence:

show sequence

TCCGCCCCGGCGGCCAGGCGGGGCTCTGCGAGGCCAGCGCTCCAGCGCCACTGTAGTTTCTGCT
GCGCCAGCGCTGGGGCCCACGGTGTCGCTCAGCCGGCCTGATCTACCCTGGTGATGGCCCCACT
GGTTGCTGTTGTATCCAGTCCACGTGCCCGGCTCTTTGCTTGTTTCCTTAGGCTGGGCACTCAG
CAGGCTGGACCCCTCCAATTGCATACGGGAGCCTGCTGCACAGCCAAGAACCACTATGAGGTGC
TGGTACTTGGTGGGGGAAGTGGTGGGATCACCATGGCCACTCGCATGAAGAGGAGAGTTGGAGC
GGAGAATGTGGCCATTGTTGAACCCAGTGAGAGGCATTTCTACCAGCCAATCTGGACACTAGTG
GGTGCTGGTGCCAAAGAGCTGTCCTCATCGGACCGTTCTACACTGAGTGTGATTCCATCCGGTG
TGCAGTGGATTCAAGATAGAGTGGCGGAACTGAACCCAGATCAGAACTGTATCCGCACAGACAA
TGGCAAGGAGATCTCCTACAGATATCTTATCATCGCTCTTGGAATCCAGCTGGACTATGAGAAG
ATTAAAGGACTACCTGAAGGCTTTGCTTATCCAAAAATAGGGTCCAATTACTCAGTTAAGACAG
TGGAGAAGACATGGAAGGCCCTGCAGGACTTCAAGGAAGGCAATGCCCTTTTCACCTTCCCAAA
CACTCCAGTGAAGTGTGCTGGTGCCCCCCAGAAGATCATGTACCTATCGGAAGCCTACTTCAGA
AAGACTGGAAAGCGATCCAAGGCTAATATCATCTTCAACACAGCCCTTGGAACAATTTTTGGAG
TTAAGAAGTACGCAGATGCTTTGCAGGAGATCATTCGGGAGAGGAACGTTTCTGTCAACTATAA
GCACAATCTTATTGAGGTCCGAGCTGACAAACAGGAGGCTGTTTTTGAGAACCTGGACAAGCCT
GGGGAGACACATGTGATTCATTATGAAATGCTTCACGTCACGCCACCCATGAGCTCGCCAGATG
TCCTCAAGAGGAGTCCTGTGGCCGATTCTGCTGGCTGGGTGGACGTGGATAAGGAGACTCTGCA
GCATAAGAAATACCCGAATGTGTTTGGCATCGGGGACTGCACCAACCTCCCAACTTCAAAGACG
GCTGCTGCAGTAGCTGCCCAATCTGGAATCCTTGATAGAACAATTTCTCTGATTATGAAGAATC
AAACACCCACAAAAAAGTATGATGGCTATACCTCGTGCCCACTGGTGACTGGTTACAACCGTGT
GATTCTTGCTGAGTTTGACTACACAGCTCAGCCTCTGGAAACCTTCCCCTTTGATCAGAGTAAA
GAACGAATTTCCATGTACCTCATGAAGGCTGACATGATGCCGTTCCTGTATTGGAATATGATGC
TAAGAGGCTACTGGGGAGGTCCAGCCTTCTTGCGAAAGCTGTTTCATCTGGGCCTGAGTTAAAG
ATGGCTCAGCACTTGCTCTTTTTGGATGATGTCTGGACCAAAATCACAGTTACTGATTGACATG
ACAGATCCAAAGGACTCAGAATCTTACCCTTTAAGGAGTTTCTTACTGGACATGATGACCTTTC
TAGACCTCTGAATAGCTATCATGTGAACAACCCAGAATGAGTCTTTGGAAACATCCAAAATAAA
ATTCTATTTTATAAATA

hide sequence

RefSeq Acc Id:

XM_039105891 ⟹ XP_038961819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	130,300,247 - 130,339,274 (+)	NCBI
mRatBN7.2	3	109,846,730 - 109,885,691 (+)	NCBI

RefSeq Acc Id:

XM_039105892 ⟹ XP_038961820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	130,294,856 - 130,341,655 (+)	NCBI
mRatBN7.2	3	109,841,225 - 109,886,724 (+)	NCBI

RefSeq Acc Id:

XM_063284597 ⟹ XP_063140667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	130,300,209 - 130,339,274 (+)	NCBI

RefSeq Acc Id:

XM_063284598 ⟹ XP_063140668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	130,300,197 - 130,340,795 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001041378	(Get FASTA)	NCBI Sequence Viewer
	NP_001424747	(Get FASTA)	NCBI Sequence Viewer
	NP_001424748	(Get FASTA)	NCBI Sequence Viewer
	XP_006234949	(Get FASTA)	NCBI Sequence Viewer
	XP_038961819	(Get FASTA)	NCBI Sequence Viewer
	XP_038961820	(Get FASTA)	NCBI Sequence Viewer
	XP_063140667	(Get FASTA)	NCBI Sequence Viewer
	XP_063140668	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58560	(Get FASTA)	NCBI Sequence Viewer
	AAP92647	(Get FASTA)	NCBI Sequence Viewer
	EDL80049	(Get FASTA)	NCBI Sequence Viewer
	EDL80050	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061547
	ENSRNOP00000061547.2
	ENSRNOP00000074060.2
	ENSRNOP00000085049
	ENSRNOP00000085049.1

RefSeq Acc Id:

NP_001041378 ⟸ NM_001047913

- UniProtKB:

A0A8I6AAA2 (UniProtKB/TrEMBL), A0A9K3Y7D1 (UniProtKB/TrEMBL), B0BMT9 (UniProtKB/TrEMBL), F1M5R5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPLVAVVSSPRARLFACFLRLGTQQAGPLQLHTGACCTAKNHYEVLVLGGGSGGITMATRMKR
RVGAENVAIVEPSERHFYQPIWTLVGAGAKELSSSDRSTLSVIPSGVQWIQDRVAELNPDQNCI
RTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFAYPKIGSNYSVKTVEKTWKALQDFKEGNALF
TFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTALGTIFGVKKYADALQEIIRERNVS
VNYKHNLIEVRADKQEAVFENLDKPGETHVIHYEMLHVTPPMSSPDVLKRSPVADSAGWVDVDK
ETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISLIMKNQTPTKKYDGYTSCPLVTG
YNRVILAEFDYTAQPLETFPFDQSKERISMYLMKADMMPFLYWNMMLRGYWGGPAFLRKLFHLG
LS

hide sequence

RefSeq Acc Id:

XP_006234949 ⟸ XM_006234887

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAPLVAVVSSPRARLFACFLRLGTQQAGPLQLHTGACCTAKNHYEVLVLGGGSGGITMATRMKR
RVGAENVAIVEPSERHFYQPIWTLVGAGAKELSSSDRSTLSVIPSGVQWIQDRVAELNPDQNCI
RTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFAYPKIGSNYSVKTVEKTWKALQDFKEGNALF
TFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTALGTIFGVKKYADALQEIIRERNVS
VNYKHNLIEVRADKQEAVFENLDKPGETHVIHYEMLHVTPPMSSPDVLKRSPVADSAGWVDVDK
ETLQHKKYPNVFGIGDCTNLPTSKTAAAVAAQSGILDRTISLIMKNQTPTKKYDGYTSCPLVTG
YNRVILAEFDYTAQPLETFPFDQSKERISMYLMKADMMPFLYWNMMLRGYWGGPAFLRKLFHLG
LS

hide sequence

Ensembl Acc Id:

ENSRNOP00000074060 ⟸ ENSRNOT00000089204

Ensembl Acc Id:

ENSRNOP00000061547 ⟸ ENSRNOT00000068129

RefSeq Acc Id:	XP_038961820 ⟸ XM_039105892
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038961819 ⟸ XM_039105891
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AAA2 (UniProtKB/TrEMBL), A0A9K3Y7D1 (UniProtKB/TrEMBL), B0BMT9 (UniProtKB/TrEMBL), F1M5R5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000082267 ⟸ ENSRNOT00000109473

Ensembl Acc Id:

ENSRNOP00000089443 ⟸ ENSRNOT00000095311

Ensembl Acc Id:

ENSRNOP00000085049 ⟸ ENSRNOT00000094867

RefSeq Acc Id:	XP_063140668 ⟸ XM_063284598
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A347 (UniProtKB/TrEMBL), A0A8I6AAA2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140667 ⟸ XM_063284597
- Peptide Label:	isoform X1
- UniProtKB:	A0A9K3Y7D1 (UniProtKB/TrEMBL), B0BMT9 (UniProtKB/TrEMBL), F1M5R5 (UniProtKB/TrEMBL), A0A8I6AAA2 (UniProtKB/TrEMBL)

Protein Domains

FAD/NAD(P)-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BMT9-F1-model_v2	AlphaFold	B0BMT9	1-450	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692375

Promoter ID:

EPDNEW_R2899

Type:

initiation region

Name:

Sqor_1

Description:

sulfide quinone oxidoreductase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	114,900,328 - 114,900,388	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564504	AgrOrtholog
BioCyc Gene	G2FUF-48080	BioCyc
BioCyc Pathway	PWY-5285 [sulfide oxidation III (to sulfite)]	BioCyc
BioCyc Pathway Image	PWY-5285	BioCyc
Ensembl Genes	ENSRNOG00000000172	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068129	ENTREZGENE
	ENSRNOT00000068129.5	UniProtKB/TrEMBL
	ENSRNOT00000089204.3	UniProtKB/TrEMBL
	ENSRNOT00000094867	ENTREZGENE
	ENSRNOT00000094867.2	UniProtKB/TrEMBL
Gene3D-CATH	3.50.50.60	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7456444	IMAGE-MGC_LOAD
InterPro	FAD/NAD-bd_sf	UniProtKB/TrEMBL
	Pyr_nucl-diS_OxRdtase_FAD/NAD	UniProtKB/TrEMBL
	Sulphide_quinone_reductase	UniProtKB/TrEMBL
KEGG Report	rno:691966	UniProtKB/TrEMBL
MGC_CLONE	MGC:187237	IMAGE-MGC_LOAD
NCBI Gene	Sqor	ENTREZGENE
PANTHER	PTHR10632	UniProtKB/TrEMBL
	SULFIDE:QUINONE OXIDOREDUCTASE, MITOCHONDRIAL	UniProtKB/TrEMBL
Pfam	Pyr_redox_2	UniProtKB/TrEMBL
PhenoGen	Sqor	PhenoGen
RatGTEx	ENSRNOG00000000172	RatGTEx
Superfamily-SCOP	SSF51905	UniProtKB/TrEMBL
UniProt	A0A0G2K746_RAT	UniProtKB/TrEMBL
	A0A8I6A347	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AAA2	ENTREZGENE
	A0A9K3Y7D1	ENTREZGENE, UniProtKB/TrEMBL
	B0BMT9	ENTREZGENE, UniProtKB/TrEMBL
	F1M5R5	ENTREZGENE
	Q7TP12_RAT	UniProtKB/TrEMBL
UniProt Secondary	F1M5R5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-21	Sqor	sulfide quinone oxidoreductase	Sqrdl	sulfide quinone reductase-like (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-27	Sqrdl	sulfide quinone reductase-like (yeast)	LOC691966	similar to Sulfide:quinone oxidoreductase, mitochondrial precursor	Data merged from RGD:1593326	737654	APPROVED
2006-11-20	LOC691966	similar to Sulfide:quinone oxidoreductase, mitochondrial precursor			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	Sqrdl	sulfide quinone reductase-like (yeast)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

BioCyc Pathways

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

BioCyc Pathways